ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42b12 |
|---|---|
| Clone Library Name | barley_pub |
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = -3 Query: 186 GLQRFLYLGGEHPVCI-FSVRQAA---LHHRCVLNNRMYNVSE 70 GL++ +G HP + F+V +A HHR ++NN++Y + + Sbjct: 247 GLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = -3 Query: 186 GLQRFLYLGGEHPVCI-FSVRQAA---LHHRCVLNNRMYNVSE 70 GL++ +G HP + F+V +A HHR ++NN++Y + + Sbjct: 247 GLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/55 (23%), Positives = 21/55 (38%) Frame = -3 Query: 198 CGLCGLQRFLYLGGEHPVCIFSVRQAALHHRCVLNNRMYNVSERCTIISRYRPGC 34 C LC + L P+C + L H C+ + +RC ++ Y C Sbjct: 264 CFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDAC 318
>Y3320_MYCBO (P65066) Hypothetical protein Mb3320| Length = 415 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +3 Query: 171 GIAAAHISHMDPRMFH-NEQHISILERGCSILITTKG--RSPQPETPNRRAGF 320 G+ + HI+H+ PR+ ++ + + ERG +++ T +G R+ P+ R+ F Sbjct: 217 GVGSTHINHLTPRVLDIDDLYRRMTERGITMIDTIQGPPRTDGPDVLLRQTSF 269
>Y3292_MYCTU (P65065) Hypothetical protein Rv3292/MT3391| Length = 415 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +3 Query: 171 GIAAAHISHMDPRMFH-NEQHISILERGCSILITTKG--RSPQPETPNRRAGF 320 G+ + HI+H+ PR+ ++ + + ERG +++ T +G R+ P+ R+ F Sbjct: 217 GVGSTHINHLTPRVLDIDDLYRRMTERGITMIDTIQGPPRTDGPDVLLRQTSF 269
>ZFP62_HUMAN (Q8NB50) Zinc finger protein 62 homolog (Zfp-62)| Length = 694 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 16 HRVLLVATRPVSTDNCTTFRYIVHS-VIQHTSMMQGRLPYTKNTHRMFS 159 H+ + +P D C YI HS +I H S+ QG+ PY + F+ Sbjct: 569 HKRIHTGEKPYECDECGK-AYISHSSLINHKSVHQGKQPYNCECGKSFN 616
>Y487_TREPA (O83500) Hypothetical protein TP0487| Length = 525 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/64 (29%), Positives = 24/64 (37%) Frame = -3 Query: 231 CVVHCETSLGPCGLCGLQRFLYLGGEHPVCIFSVRQAALHHRCVLNNRMYNVSERCTIIS 52 C C CG G + G H C F R AA+HHR R ++ Sbjct: 15 CPACCHARCKACGERGER-----GAVHRACNFKRRTAAVHHR-----------TRPAVLQ 58 Query: 51 RYRP 40 +YRP Sbjct: 59 QYRP 62
>STE14_YEAST (P32584) Protein-S-isoprenylcysteine O-methyltransferase (EC| 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Prenylcysteine carboxyl methyltransferase) (pcCMT) (Prenylated protein carboxyl methyltransferase) (PPMT) Length = 239 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 8 PTRIGFYWWQPGLYLLIIVQRSDTLYILL 94 P+ +GF+WW G LL++ S ++I + Sbjct: 173 PSYLGFFWWAIGTQLLLLNPLSLVIFIFV 201
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +3 Query: 168 IGIAAAHISHMDPRMFHNEQHISILERGCSILITTKGRSPQPETPN 305 I + A +++ D + HNE +SIL RG ++T+ P P+ Sbjct: 1318 IQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAISLPNIRKPD 1363
>EMBA_MYCAV (P71485) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1108 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = -3 Query: 183 LQRFLYLGGEHPVCIFSVRQAALHHRCVLNNRMYNVSERCTIISRYRPGCHQ*NPMRVGF 4 L++ + + G V V A L R + N +SRYRPG H N RVG Sbjct: 201 LKQIVMVLGTLAVLTAIVALAVLDRRSRGGGTLINWRSPIAWLSRYRPGTHLANWRRVGL 260 Query: 3 A 1 A Sbjct: 261 A 261
>BMPER_HUMAN (Q8N8U9) BMP-binding endothelial regulator protein precursor (Bone| morphogenetic protein-binding endothelial cell precursor-derived regulator) (Crossveinless-2 protein) (hCV2) Length = 685 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -3 Query: 303 WGFPVEETFL-WLLSGLSTHAQVWRCVVHCETSLGPCGLC 187 W P E L G+ T + V RCVVHC+ L G+C Sbjct: 121 WQSPAEPCVLRQCQEGVVTESGV-RCVVHCKNPLEHLGMC 159
>GPR55_HUMAN (Q9Y2T6) Probable G-protein coupled receptor 55| Length = 319 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = -2 Query: 277 PLVVIRIEHPRSSMEMCCSL*NILGSMW-LMWAAAIPILGWRTSCVYF*C 131 PL+V + PR +CC++ W L+W +IPI + + C Sbjct: 126 PLLVSHLRSPRKIFGICCTI-------WVLVWTGSIPIYSFHGKVEKYMC 168
>VHS2_YEAST (P40463) Protein VHS2 (Viable in a HAL3 SIT4 background protein 2)| Length = 436 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Frame = +2 Query: 155 SPPKYRNRCSPHKPHGPKDVSQ*TTHLHT*AWVLNPDNNQR-----KVSSTGNP 301 S + N SP P P D ++ A +L+ DNN SST NP Sbjct: 174 SSQSFDNETSPAHPRSPNDHGSRLLRFYSYADMLSDDNNNNVSNATSTSSTANP 227
>ZFP62_MOUSE (Q8C827) Zinc finger protein 62 homolog (Zfp-62) (ZT3)| Length = 914 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 16 HRVLLVATRPVSTDNCTTFRYIVHS-VIQHTSMMQGRLPYTKNTHRMFS 159 H+ + +P D C YI HS +I H S+ +G+ PY + F+ Sbjct: 765 HKRIHTGEKPYGCDECEK-AYISHSSLINHKSVHRGKQPYNCECGKSFN 812
>OR2A5_HUMAN (Q96R48) Olfactory receptor 2A5 (Olfactory receptor 7-138/7-141)| (OR7-138) (OR7-141) Length = 311 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 189 CGLQRFLYLGGEHPVCIFSVRQAALHHRCVLNNRMYNVSER---CTIIS 52 C +Q FLY+ H C+ V + + + + Y+V R CT+++ Sbjct: 97 CTMQTFLYMAFAHTECLILVMMSYDRYMAICHPLQYSVIMRWGVCTVLA 145
>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 22.7 bits (47), Expect(2) = 9.8 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 Query: 173 SYTWVENILCVFLV*GRRP 117 +YTW EN VFL+ RP Sbjct: 527 TYTWGENETDVFLLNSTRP 545 Score = 22.7 bits (47), Expect(2) = 9.8 Identities = 7/16 (43%), Positives = 12/16 (75%) Frame = -3 Query: 339 SVTHD*ENQPACWGFP 292 +VT+D + +P CW +P Sbjct: 476 NVTNDGDMRPYCWHYP 491 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,280,054 Number of Sequences: 219361 Number of extensions: 1354937 Number of successful extensions: 3434 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3434 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
