>emb|AL603863.7| Human DNA sequence from clone RP11-346A3 on chromosome 13 Contains
            the 5' end of the PCDH9 gene for protocadherin 9, a
            laminin receptor 1 (67kDa ribosomal protein SA) (LAMR1)
            pseudogene and a CpG island, complete sequence
          Length = 71774

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 86   attctgttattcaacacacatcta 109
            ||||||||||||||||||||||||
Sbjct: 3843 attctgttattcaacacacatcta 3820

>gb|AC103632.8| Mus musculus chromosome 1, clone RP24-555D5, complete sequence
          Length = 177269

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 86     attctgttattcaacacacatctat 110
              ||||| |||||||||||||||||||
Sbjct: 149407 attcttttattcaacacacatctat 149383

>gb|AC131765.3| Mus musculus BAC clone RP24-240I9 from chromosome 1, complete sequence
          Length = 152666

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 86    attctgttattcaacacacatctat 110
             ||||| |||||||||||||||||||
Sbjct: 23140 attcttttattcaacacacatctat 23116

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 210      atgtttcacaatgaacaacac 230
                |||||||||||||||||||||
Sbjct: 16341529 atgtttcacaatgaacaacac 16341509

>dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419C03
          Length = 146929

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   atgtttcacaatgaacaacac 230
             |||||||||||||||||||||
Sbjct: 27195 atgtttcacaatgaacaacac 27175

>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0487H05
          Length = 176057

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    atgtttcacaatgaacaacac 230
              |||||||||||||||||||||
Sbjct: 176016 atgtttcacaatgaacaacac 175996

>gb|AC126683.4| Mus musculus BAC clone RP23-62G15 from 6, complete sequence
          Length = 167297

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aaatacacacaggatgttct 157
             ||||||||||||||||||||
Sbjct: 39465 aaatacacacaggatgttct 39484

>gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome 6, complete
            sequence
          Length = 279848

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  aaatacacacaggatgttct 157
            ||||||||||||||||||||
Sbjct: 4362 aaatacacacaggatgttct 4381

>gb|AC011552.6| Homo sapiens chromosome 19 clone LLNLR-276F8, complete sequence
          Length = 35865

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ttggtggcaaccaggcctgt 47
             ||||||||||||||||||||
Sbjct: 11104 ttggtggcaaccaggcctgt 11085

>dbj|AK138546.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330054L18
           product:unclassifiable, full insert sequence
          Length = 5426

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 aaatacacacaggatgttct 157
           ||||||||||||||||||||
Sbjct: 219 aaatacacacaggatgttct 200

>gb|U67029.1|VTU67029 Volvox tertius nuclear ribosomal DNA internal transcribed spacer
           region 2
          Length = 267

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gcaatcacttgctcaatgct 369
           ||||||||||||||||||||
Sbjct: 172 gcaatcacttgctcaatgct 191


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,656,113
Number of Sequences: 3902068
Number of extensions: 3656113
Number of successful extensions: 60246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60210
Number of HSP's gapped (non-prelim): 36
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)