>TOP1_METJA (Q59046) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 761

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -2

Query: 346 VEVAGPDEARRLKLENKVAASCSAPV----EFDVLAQPECDTVPVYPEMLHGEELHLCIR 179
           V+ + PD+ R +K+ NKV  +C +P+    + ++   PEC    V  +    EE  +C +
Sbjct: 628 VKYSLPDKGR-IKIPNKVCDACKSPILKIGDREICINPECPLKQVEVK----EEDRICPK 682

Query: 178 IGKTKIICS*TYDKHQQCSSGVICVF 101
            G   I+    Y     CS+   C +
Sbjct: 683 CGAKLILKKGVYGAFYGCSNYPKCKY 708

>YMZ2_YEAST (Q03177) Hypothetical 94.3 kDa Trp-Asp repeats-containing protein|
           in SNZ1-YPK2 intergenic region
          Length = 834

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 240 HSGCANTSNSTGAEQLAATLFSSFSRRASSGPATSTEEL 356
           HS  +N+SN+TG+E+ + +   SF   +SSG + S  +L
Sbjct: 15  HSEFSNSSNTTGSEEESRSHQESFDGESSSGESKSKSKL 53

>COMB_STRPN (P36498) Transport protein comB|
          Length = 449

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 116 SRTTLLMLIIGSGTDDLRLADTDTQMELLPVQHLRIHGDSVTFRLRQHVELDRGRAARRH 295
           S  T  +   GSGT     +   +Q+E L  QHL   G  +T   ++ +E + G+  + +
Sbjct: 245 SLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGN 304

Query: 296 LILK 307
           L+ K
Sbjct: 305 LLDK 308

>NUPL2_XENLA (Q5XGN1) Nucleoporin-like 2|
          Length = 491

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 192 WSSSPCSISGYTGTVSHSGCANTSNST---GAEQLAATLFSSFSRRASSGPAT 341
           +S +P +ISG+  T S+SG    SN+    GA  +AA    +F   +S+ PA+
Sbjct: 323 FSFAPSTISGFGSTASNSGFGAASNAAGFQGAANIAAA--PAFGVASSTAPAS 373

>PYRG_MYCLE (P53529) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 590

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 307 LENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEEL 194
           L+NK+A  C   ++  V++ P+  ++   P++LH EEL
Sbjct: 232 LKNKIALMCDVDID-GVISTPDAPSIYDIPKVLHREEL 268

>PYRG_MYCTU (P0A5U2) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 586

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 307 LENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEEL 194
           L+NK+A  C   ++  V++ P+  ++   P++LH EEL
Sbjct: 232 LKNKIALMCDVDID-GVISTPDAPSIYDIPKVLHREEL 268

>PYRG_MYCBO (P0A5U3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 586

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 307 LENKVAASCSAPVEFDVLAQPECDTVPVYPEMLHGEEL 194
           L+NK+A  C   ++  V++ P+  ++   P++LH EEL
Sbjct: 232 LKNKIALMCDVDID-GVISTPDAPSIYDIPKVLHREEL 268

>BRAT_DROME (Q8MQJ9) Brain tumor protein|
          Length = 1037

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 195 SSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGP 335
           SSS CS S  + + S S  ++TS  +G    ++++ S+ +  +S+GP
Sbjct: 84  SSSSCSSSSSSSSSSSSSSSSTSGLSGCGSTSSSVISANNVASSNGP 130

>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)|
          Length = 220

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +3

Query: 195 SSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPATS 344
           SSS  + SG + T + SG ++T+N++G+     T  S  SR  SSG ++S
Sbjct: 10  SSSTNNSSGSSSTNNSSGSSSTNNASGSSSSNNT--SGSSRNNSSGSSSS 57

>PSAA_PROMA (Q9L4N4) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
          Length = 773

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 230 PRVSGDAARGGAPSVYPYRQDEDHLFLNL**ASAM*FWSHMCLL*SR*RIGLPLFTWLW 54
           P   G+ A+G AP+ Y    D DH  ++    +   FWS      S+   G    TW+W
Sbjct: 5   PPERGEKAKGAAPTPYDQPVDRDHAPIDYEKLNKPGFWS------SKLSKGPKTTTWIW 57

>COMB_STRR6 (P59654) Transport protein comB|
          Length = 449

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +2

Query: 116 SRTTLLMLIIGSGTDDLRLADTDTQMELLPVQHLRIHGDSVTFRLRQHVELDRGRAARRH 295
           S  T  +   GSGT     +   +Q+E L  QHL   G  ++   ++ +E + G+  + +
Sbjct: 245 SLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELSLLAQKILEAESGKKVQGN 304

Query: 296 LILK 307
           L+ K
Sbjct: 305 LLDK 308

>PININ_CANFA (P79149) Pinin|
          Length = 773

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 189 RWSSSPCSISGYTGTVSHSGCANTSNSTGAEQLAATLFSSFSRRASSGPATSTEE 353
           R SSS  S S  T + S    ++ S+S+ +   +++  S  SRR SS   TS+ E
Sbjct: 632 RSSSSSSSSSSSTSSSSGGSSSSGSSSSRSSSSSSSSTSGSSRRDSSSSTTSSSE 686

>BEDB_PSEPU (Q07947) Benzene 1,2-dioxygenase system ferredoxin subunit|
          Length = 107

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 259 VLAQPECDTVPVYPEMLHGEELHLCIRIGKTK 164
           V A P C  + VYP  + G+E+H+ +  G+ K
Sbjct: 76  VKALPACKPIKVYPIKIEGDEVHVDLDNGELK 107

>CAAL_SILPO (Q5LRC0) Carboxylate-amine ligase SPO2209 (EC 6.3.-.-)|
          Length = 384

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 122 TTLLMLIIGSGTDDLRLADTDTQMELLPVQHLRIHGDSVTFRLRQHVEL-----DRGRAA 286
           T L+  ++G  ++D     T    E+  ++ +  HG+S T + R H E      D GRA 
Sbjct: 315 TVLMDELMGMLSEDAEALGT--LPEIARLRQIAEHGNSATRQRRVHAEALARGEDAGRAV 372

Query: 287 RRHLI 301
            RHLI
Sbjct: 373 VRHLI 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,892,762
Number of Sequences: 219361
Number of extensions: 1355032
Number of successful extensions: 4448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4447
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)