ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42b05 |
|---|---|
| Clone Library Name | barley_pub |
>PDIA6_PONPY (Q5R6T1) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| Length = 440 Score = 124 bits (311), Expect = 2e-28 Identities = 61/137 (44%), Positives = 89/137 (64%), Gaps = 2/137 (1%) Frame = -2 Query: 516 ILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNV 337 ILD+ A GRN YLE+LL +A+K+KK + ++W AG Q++LE +G+GG+GYPAM A+N Sbjct: 305 ILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINA 364 Query: 336 KKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDE 163 +K +A L+ +F I EF++E G P+ G PT+V+ EPWDG+DGE+ ED+ Sbjct: 365 RKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDD 424 Query: 162 FSLEELMADSSAPNDEL 112 L ++ D DEL Sbjct: 425 IDLSDVELDDLG-KDEL 440
>PDIA6_HUMAN (Q15084) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Thioredoxin domain-containing protein 7) Length = 440 Score = 124 bits (311), Expect = 2e-28 Identities = 61/137 (44%), Positives = 89/137 (64%), Gaps = 2/137 (1%) Frame = -2 Query: 516 ILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNV 337 ILD+ A GRN YLE+LL +A+K+KK + ++W AG Q++LE +G+GG+GYPAM A+N Sbjct: 305 ILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINA 364 Query: 336 KKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDE 163 +K +A L+ +F I EF++E G P+ G PT+V+ EPWDG+DGE+ ED+ Sbjct: 365 RKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDD 424 Query: 162 FSLEELMADSSAPNDEL 112 L ++ D DEL Sbjct: 425 IDLSDVELDDLG-KDEL 440
>PDIA6_MOUSE (Q922R8) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Thioredoxin domain-containing protein 7) Length = 440 Score = 122 bits (305), Expect = 8e-28 Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 2/137 (1%) Frame = -2 Query: 516 ILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNV 337 ILD+ A GRN YLE+LL +A+K+KK + ++W AG Q +LE +G+GG+GYPAM A+N Sbjct: 305 ILDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINA 364 Query: 336 KKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDE 163 +K +A L+ +F I EF++E G P+ G PT+ EPWDGKDGE+ ED+ Sbjct: 365 RKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITPREPWDGKDGELPVEDD 424 Query: 162 FSLEELMADSSAPNDEL 112 L ++ D DEL Sbjct: 425 IDLSDVELD-DLEKDEL 440
>PDIA6_RAT (Q63081) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Calcium-binding protein 1) (CaBP1) (Thioredoxin domain-containing protein 7) Length = 440 Score = 120 bits (300), Expect = 3e-27 Identities = 60/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%) Frame = -2 Query: 516 ILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNV 337 ILD+ A GRN YLE+LL +A+K+KK + ++W AG Q +LE +G+GG+GYPAM A+N Sbjct: 305 ILDTGATGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINA 364 Query: 336 KKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDE 163 +K +A L+ +F I EF++E G P+ G P + EPWDGKDGE+ ED+ Sbjct: 365 RKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDGELPVEDD 424 Query: 162 FSLEELMADSSAPNDEL 112 L ++ D DEL Sbjct: 425 IDLSDVELD-DLEKDEL 440
>PDIA6_MESAU (P38660) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) Length = 439 Score = 112 bits (280), Expect = 6e-25 Identities = 57/137 (41%), Positives = 84/137 (61%), Gaps = 2/137 (1%) Frame = -2 Query: 516 ILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNV 337 ILD+ A RN YLE+LL +A+K+KK + ++W AG Q++LE +G+GG+GYPAM +N Sbjct: 305 ILDTGA-ARNSYLEILLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMARINA 363 Query: 336 KKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQSEPWDGKDGEVIEEDE 163 +K +A L+ +F I EF++E G P+ G P + EPWDG+DGE+ ED+ Sbjct: 364 RKMKFALLKGSFSEQGINEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGELPVEDD 423 Query: 162 FSLEELMADSSAPNDEL 112 L ++ D DEL Sbjct: 424 IDLSDVELD-DLEKDEL 439
>PDIA6_CAEEL (Q11067) Probable protein disulfide-isomerase A6 precursor (EC| 5.3.4.1) Length = 440 Score = 105 bits (262), Expect = 7e-23 Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 2/131 (1%) Frame = -2 Query: 516 ILDSKAEGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNV 337 ILD ++E RN YL +L +EKFKK+ + ++W Q LE+ VGG+GYPAM ALN Sbjct: 308 ILDCQSECRNNYLAMLKEQSEKFKKNLWGWIWVEGAAQPALEESFEVGGFGYPAMTALNF 367 Query: 336 KKGAYAPLRSAFELAEITEFVKEA--GRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDE 163 +K YA L+ +F I EF+++ G+G +L +G P + ++E WDGKDG + ED+ Sbjct: 368 RKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAEDD 427 Query: 162 FSLEELMADSS 130 L ++ D + Sbjct: 428 IDLSDIDLDKT 438
>MUTS_DESVH (P61666) DNA mismatch repair protein mutS| Length = 905 Score = 35.0 bits (79), Expect = 0.12 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = -2 Query: 426 VWAGAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEA-GRGGK 250 +W A K A E + G PAM L + P RS F+L TE V A G Sbjct: 166 LWQWAQKMAPRELLLPEG-VDTPAMATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADL 224 Query: 249 GNLPLEGAPTVVQS 208 G+L LEG P +V++ Sbjct: 225 GSLGLEGKPELVRA 238
>YAI1_ENCCU (Q8SU96) Hypothetical protein ECU10_1810| Length = 621 Score = 32.3 bits (72), Expect = 0.80 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -2 Query: 315 LRSAFELAEITEFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEED---EFSLEEL 145 LR+A EL + E K G+G K +G+ V + KD E +EE E SLEE+ Sbjct: 345 LRNALELLRMEEKEKSKGKGKKKKGGKKGSGEVTAKMEEEKKDSEEVEESAEAEVSLEEM 404
>MBD2_MOUSE (Q9Z2E1) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding| protein MBD2) Length = 414 Score = 31.6 bits (70), Expect = 1.4 Identities = 24/72 (33%), Positives = 30/72 (41%) Frame = -1 Query: 421 GRRRQAS*SGEAGRSRWLWLSSHGRSQREERRIRSAP*RLRARRNHRVCEGGRARRKGQP 242 G RR+ + G GR RW ++ R R R R R GR R +G+P Sbjct: 48 GVRREGARGGGRGRGRW----------KQAARGGGVCGRGRGRGRGRGRGRGRGRGRGRP 97 Query: 241 SSGGRPDGGPVG 206 SGG GG G Sbjct: 98 QSGGSGLGGDGG 109
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 31.2 bits (69), Expect = 1.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 207 PTGPPSGRPPEEGCPFRRALPPSQ 278 P G P GRPP++G P + PP Q Sbjct: 100 PPGKPEGRPPQQGGPGKPERPPPQ 123
>MBD2_HUMAN (Q9UBB5) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding| protein MBD2) (Demethylase) (DMTase) Length = 411 Score = 30.8 bits (68), Expect = 2.3 Identities = 24/72 (33%), Positives = 30/72 (41%) Frame = -1 Query: 421 GRRRQAS*SGEAGRSRWLWLSSHGRSQREERRIRSAP*RLRARRNHRVCEGGRARRKGQP 242 G RR+ + G GR RW ++ R R R R R GR R +G+P Sbjct: 48 GVRREGARGGGRGRGRW----------KQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRP 97 Query: 241 SSGGRPDGGPVG 206 SGG GG G Sbjct: 98 PSGGSGLGGDGG 109
>PURT_ECOLI (P33221) Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)| (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) Length = 391 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -2 Query: 378 VGGYGYPAMV--ALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEG 229 V GYP +V ++ +RSA +LA+ ++ ++ GR G G + +EG Sbjct: 144 VADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEG 195
>PDIA4_CAEEL (P34329) Probable protein disulfide-isomerase A4 precursor (EC| 5.3.4.1) (ERp-72 homolog) Length = 618 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = -2 Query: 498 EGRNKYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVAL---NVKKG 328 EG + +L++A+K++K Y F A + A +++G+G G V + + KK Sbjct: 398 EGSEYWRSKVLNIAQKYQKDKYKFAVADEEEFAKELEELGLGDSGLEHNVVVFGYDGKKY 457 Query: 327 AYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGAP 223 P EL E E + GK ++ AP Sbjct: 458 PMNPDEFDGELDENLEAFMKQISSGKAKAHVKSAP 492
>PUR7_FUSNN (Q8REV1) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 237 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 315 LRSAFELAEIT--EFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDEF 160 L+ F+ IT +F E G+ KG + L T WD K GE +++D F Sbjct: 162 LKEKFDNIGITLVDFKIEFGKNSKGEILLADEITPDTCRLWDKKTGEKLDKDRF 215
>DEDD2_MOUSE (Q8QZV0) DNA-binding death effector domain-containing protein 2| (FADD-like anti-apoptotic molecule 3) (DED-containing protein FLAME-3) Length = 330 Score = 29.6 bits (65), Expect = 5.2 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -1 Query: 418 RRRQAS*SGEAGRSRWLWLSSHGRSQREERRIRSAP*RLRARRNHRVCEGGRARRK-GQP 242 RRRQAS S ++ +S+W S + QR R S+ R R R + + ++ G+P Sbjct: 133 RRRQASSSSDSPQSQWDTGSPPTKRQRRSRGRPSSGARQRRRAGLAASQQHQQHQELGRP 192 Query: 241 SSGGR 227 SS G+ Sbjct: 193 SSEGK 197
>PEB1_DROME (Q9U6L5) Ejaculatory bulb-specific protein 1 precursor (Ejaculatory| bulb-specific protein I) (PEB-me) Length = 377 Score = 26.2 bits (56), Expect(2) = 5.3 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 13/57 (22%) Frame = -2 Query: 441 SPYSFVWAGAGKQADLEKQV-------------GVGGYGYPAMVALNVKKGAYAPLR 310 S YS + AG GK +DL + G+ GY YP L G Y P R Sbjct: 89 SGYSKISAGVGKGSDLITIIKNTRSYDPYLIPPGIPGYNYPLGWPLRYPLGPYWPNR 145 Score = 21.9 bits (45), Expect(2) = 5.3 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -1 Query: 250 GQPSSGGRPDGGP 212 G+PS GG GGP Sbjct: 179 GEPSPGGPSPGGP 191
>AEXT_AERSA (Q93Q17) ADP-ribosyltransferase toxin aexT (EC 2.4.2.-) (Exoenzyme| T) Length = 475 Score = 29.3 bits (64), Expect = 6.8 Identities = 28/104 (26%), Positives = 39/104 (37%) Frame = -2 Query: 486 KYLELLLSVAEKFKKSPYSFVWAGAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLRS 307 K ELL S + K S + G+ ADL++ V G PA A A APL+S Sbjct: 187 KVTELLTSAPPELLKEAMSQLHTAMGEVADLQRAVKAEVAGEPARSATTA--AAVAPLQS 244 Query: 306 AFELAEITEFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVI 175 + K G + LE + + D EV+ Sbjct: 245 GESEVNVEPADKALAEGLQEQFGLEAEQYLGEQPHGTYSDAEVM 288
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 207 PTGPPSGRPPEEGCPFRRALPPSQT 281 P PP+ RPP P R+A PP T Sbjct: 538 PGAPPAARPPASPSPQRQAGPPQAT 562
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 207 PTGPPSGRPPEEGCPFRRALPPSQT 281 P PP+ RPP P R+A PP T Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQAT 564
>GUNC_PSEFL (P27033) Endoglucanase C precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGC) (Cellodextrinase C) Length = 748 Score = 28.9 bits (63), Expect = 8.9 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Frame = +2 Query: 269 SFTNSVISASSKALRSGA-----YAPFFTLR-ATMAGXXXXXXXXCFSRSACLPAPAQTK 430 S ++SV+S+SS ++ SG Y + L +T +G C S S C PA Sbjct: 164 SSSSSVVSSSSSSVVSGGGQCNWYGTLYPLCVSTTSGWGYENNRSCISPSTCSAQPAPYG 223 Query: 431 LYGLFLNFSATDSSSSR 481 + G + S+ SSS R Sbjct: 224 IVGGSSSPSSISSSSVR 240
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 207 PTGPPSGRPPEEGCPFRRALPPSQT 281 P PP+ RPP P R+A PP T Sbjct: 268 PGAPPAARPPASPSPQRQAGPPQAT 292 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,439,213 Number of Sequences: 219361 Number of extensions: 1372897 Number of successful extensions: 5702 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5683 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
