Clone Information

BLAST Search Result

Clone Name	rbart42b05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY739290.1\| Zea mays protein disulfide isomerase (PDIL2-3) mR...	349	6e-93
2	dbj\|AK072941.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	341	1e-90
3	dbj\|AK062254.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	333	3e-88
4	gb\|AY112452.1\| Zea mays CL286_2 mRNA sequence	210	3e-51
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	2e-27
6	dbj\|AP005393.3\| Oryza sativa (japonica cultivar-group) genomic D...	131	2e-27
7	dbj\|AP005559.3\| Oryza sativa (japonica cultivar-group) genomic D...	131	2e-27
8	gb\|AC011382.4\| Homo sapiens chromosome 5 clone CTB-13H5, complet...	44	0.45
9	emb\|BX511005.6\| Zebrafish DNA sequence from clone DKEY-72N1 in l...	42	1.8
10	gb\|AE004686.1\| Pseudomonas aeruginosa PAO1, section 247 of 529 o...	42	1.8
11	gb\|AC156989.3\| Mus musculus chromosome 1, clone RP23-379L2, comp...	42	1.8
12	gb\|AC113182.14\| Mus musculus chromosome 8, clone RP23-39F24, com...	42	1.8
13	ref\|XM_483499.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.0
14	gb\|AC110913.13\| Mus musculus chromosome 19, clone RP24-399E19, c...	40	7.0
15	gb\|AC113587.16\| Mus musculus chromosome 15, clone RP24-424I13, c...	40	7.0
16	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	40	7.0
17	gb\|AC139349.4\| Mus musculus BAC clone RP24-318A14 from chromosom...	40	7.0
18	ref\|XM_953631.1\| Neurospora crassa OR74A hypothetical protein (N...	40	7.0
19	ref\|XM_330307.1\| Neurospora crassa OR74A hypothetical protein (N...	40	7.0
20	gb\|AC119218.7\| Mus musculus chromosome 7, clone RP24-200I20, com...	40	7.0
21	gb\|AC113198.15\| Mus musculus chromosome 14, clone RP23-248E15, c...	40	7.0
22	emb\|AJ224870.1\|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & n...	40	7.0
23	gb\|AC162304.4\| Mus musculus chromosome 7, clone RP23-350J16, com...	40	7.0
24	emb\|AL035608.11\|HS479J7 Human DNA sequence from clone RP3-479J7 ...	40	7.0
25	emb\|AL772193.5\| Zebrafish DNA sequence from clone CH211-194C5 in...	40	7.0
26	gb\|AC093905.3\| Homo sapiens BAC clone RP11-739C17 from 4, comple...	40	7.0
27	gb\|AC092810.2\| Homo sapiens chromosome 1 clone RP11-385M4, compl...	40	7.0
28	gb\|AC080066.6\| Homo sapiens BAC clone CTD-2321M19 from 7, comple...	40	7.0
29	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
30	dbj\|AP005529.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
31	dbj\|AP000388.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	7.0
32	emb\|BX470085.6\| Zebrafish DNA sequence from clone DKEY-238K17 in...	40	7.0
33	dbj\|AK119370.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.0
34	dbj\|AK073978.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.0
35	tpe\|BN000648.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	40	7.0
36	gb\|AC123724.9\| Mus musculus chromosome 15, clone RP23-432N1, com...	40	7.0
37	emb\|AL939130.1\|SCO939130 Streptomyces coelicolor A3(2) complete ...	40	7.0
38	gb\|AC132382.3\| Mus musculus BAC clone RP23-425E9 from 8, complet...	40	7.0
39	emb\|AL592224.17\| Mouse DNA sequence from clone RP23-174G1 on chr...	40	7.0

>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds
          Length = 1531

 Score =  349 bits (176), Expect = 6e-93
 Identities = 356/416 (85%)
 Strand = Plus / Minus

                                                                        
Query: 105  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
            ||||||||||||| ||||| |  |  ||||||||  |||||||||| ||||| ||||| |
Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315

                                                                        
Query: 165  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
            | |||||||| |||||||||||||| ||||||||||| || || |||  ||| || || |
Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255

                                                                        
Query: 225  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 284
            | ||  | | |||||||||||| |||||||| || ||||||||||||||||| |||||| 
Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195

                                                                        
Query: 285  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 344
            |||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135

                                                                        
Query: 345  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagatcagctt 404
            |||| |||||||| |||||||| ||||| || || || ||||| ||||| |||| |||||
Sbjct: 1134 gagctaccatggcgggatagccgtagccgcccacaccaacctggttctcgagattagctt 1075

                                                                        
Query: 405  gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 464
            ||||||| ||  ||| |||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 1074 gcttgccagcagctgtccagacaaaactgtatggactctttttaaacttctcagctacag 1015

                                                                    
Query: 465  atagtagcagctcaaggtacttgtttcttccttctgcctttgagtccaggatgtct 520
            | || || ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1014 agagcaggagctcaaggtacttgtttcttccttctgcctttgaatcaaggatgtct 959

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>dbj|AK072941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full
            insert sequence
          Length = 1738

 Score =  341 bits (172), Expect = 1e-90
 Identities = 349/408 (85%)
 Strand = Plus / Minus

                                                                        
Query: 105  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
            |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 1573 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1514

                                                                        
Query: 165  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
            ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 1513 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1454

                                                                        
Query: 225  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 284
            |||  || |||| |||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 1453 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactcag 1394

                                                                        
Query: 285  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 344
            | |||||  | |||| ||| || |||||||| ||||| ||||||||||| ||||||||| 
Sbjct: 1393 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttgt 1334

                                                                        
Query: 345  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagatcagctt 404
            |||| ||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||||
Sbjct: 1333 gagcaaccatcgctggatagccataaccaccaactccaacttgcttctcaagatcagctt 1274

                                                                        
Query: 405  gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 464
            |||| || ||  ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1273 gcttcccagcagctgtccagacaaaactgtatggactctttttaaatttctcagcaacag 1214

                                                            
Query: 465  atagtagcagctcaaggtacttgtttcttccttctgcctttgagtcca 512
            ||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1213 ataatagcagctcaaggtacttgtttcttccttcggcctttgaatcca 1166

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>dbj|AK062254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G06, full
            insert sequence
          Length = 1642

 Score =  333 bits (168), Expect = 3e-88
 Identities = 348/408 (85%)
 Strand = Plus / Minus

                                                                        
Query: 105  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
            |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 1429 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1370

                                                                        
Query: 165  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
            ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 1369 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1310

                                                                        
Query: 225  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 284
            |||  || |||| |||||| || ||||| || ||||||||||| ||| |||||||||| |
Sbjct: 1309 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccctcacaaactcag 1250

                                                                        
Query: 285  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 344
            | |||||  | |||| ||| || |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 1249 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttga 1190

                                                                        
Query: 345  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagatcagctt 404
            | || ||||| |||||||||||||| ||||| ||||| || |||||||| ||||||||||
Sbjct: 1189 gggcaaccatcgctggatagccataaccaccaactccaacttgcttctcaagatcagctt 1130

                                                                        
Query: 405  gcttgccggcgcctgcccagacaaaactgtatggactcttcttaaatttctcagcaacag 464
            |||| || ||  ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1129 gcttcccagcagctgtccagacaaaactgtatggactctttttaaatttctcagcaacag 1070

                                                            
Query: 465  atagtagcagctcaaggtacttgtttcttccttctgcctttgagtcca 512
            ||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1069 ataatagcagctcaaggtacttgtttcttccttcggcctttgaatcca 1022

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>gb|AY112452.1| Zea mays CL286_2 mRNA sequence
          Length = 1510

 Score =  210 bits (106), Expect = 3e-51
 Identities = 247/294 (84%)
 Strand = Plus / Minus

                                                                        
Query: 105  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
            ||||||||||||| ||||| |  |  ||||||||  |||||||||| ||||| ||||| |
Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315

                                                                        
Query: 165  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
            | |||||||| |||||||||||||| ||||||||||| || || |||  ||| || || |
Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255

                                                                        
Query: 225  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 284
            | ||  | | |||||||||||| |||||||| || ||||||||||||||||| |||||| 
Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195

                                                                        
Query: 285  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 344
            |||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135

                                                                  
Query: 345  gagcgaccatggctggatagccatagccaccgactccgacctgcttctccagat 398
            |||| |||||||| |||||||| ||||| || || || ||||| ||||| ||||
Sbjct: 1134 gagctaccatggcgggatagccgtagccgcccacaccaacctggttctcgagat 1081



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 421  ccagacaaaactgtatggactcttcttaaatttctcagcaacagatagtagcagctcaag 480
            ||||||||||||||||||||||     ||| |||||||| ||||| || || ||||||||
Sbjct: 1058 ccagacaaaactgtatggactcnnnnnaaacttctcagctacagagagcaggagctcaag 999

              
Query: 481  gt 482
            ||
Sbjct: 998  gt 997

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  131 bits (66), Expect = 2e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 308      ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 367
                |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 16880755 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 16880696

                                                                            
Query: 368      tagccaccgactccgacctgcttctccagatcagcttgcttgccggcgcctgcccagaca 427
                || ||||| ||||| || |||||||| |||||||||||||| || ||  ||| |||||||
Sbjct: 16880695 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 16880636

                      
Query: 428      aaactg 433
                ||||||
Sbjct: 16880635 aaactg 16880630



 Score =  131 bits (66), Expect = 2e-27
 Identities = 78/82 (95%)
 Strand = Plus / Minus

                                                                            
Query: 431      ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 490
                |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16880229 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 16880170

                                      
Query: 491      cttccttctgcctttgagtcca 512
                |||||||| |||||||| ||||
Sbjct: 16880169 cttccttcggcctttgaatcca 16880148



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                            
Query: 105      agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
                |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 16881040 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 16880981

                                                                            
Query: 165      cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
                ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 16880980 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 16880921

                                                                          
Query: 225      gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 282
                |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 16880920 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 16880863

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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score =  131 bits (66), Expect = 2e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                         
Query: 308   ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 367
             |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 10568 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 10509

                                                                         
Query: 368   tagccaccgactccgacctgcttctccagatcagcttgcttgccggcgcctgcccagaca 427
             || ||||| ||||| || |||||||| |||||||||||||| || ||  ||| |||||||
Sbjct: 10508 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 10449

                   
Query: 428   aaactg 433
             ||||||
Sbjct: 10448 aaactg 10443



 Score =  131 bits (66), Expect = 2e-27
 Identities = 78/82 (95%)
 Strand = Plus / Minus

                                                                         
Query: 431   ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 490
             |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10042 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 9983

                                   
Query: 491   cttccttctgcctttgagtcca 512
             |||||||| |||||||| ||||
Sbjct: 9982  cttccttcggcctttgaatcca 9961



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 105   agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
             |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 10853 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 10794

                                                                         
Query: 165   cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
             ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 10793 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 10734

                                                                       
Query: 225   gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 282
             |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 10733 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 10676

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>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score =  131 bits (66), Expect = 2e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                         
Query: 308   ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 367
             |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 78446 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 78387

                                                                         
Query: 368   tagccaccgactccgacctgcttctccagatcagcttgcttgccggcgcctgcccagaca 427
             || ||||| ||||| || |||||||| |||||||||||||| || ||  ||| |||||||
Sbjct: 78386 taaccaccaactccaacttgcttctcaagatcagcttgcttcccagcagctgtccagaca 78327

                   
Query: 428   aaactg 433
             ||||||
Sbjct: 78326 aaactg 78321



 Score =  131 bits (66), Expect = 2e-27
 Identities = 78/82 (95%)
 Strand = Plus / Minus

                                                                         
Query: 431   ctgtatggactcttcttaaatttctcagcaacagatagtagcagctcaaggtacttgttt 490
             |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 77920 ctgtatggactctttttaaatttctcagcaacagataatagcagctcaaggtacttgttt 77861

                                   
Query: 491   cttccttctgcctttgagtcca 512
             |||||||| |||||||| ||||
Sbjct: 77860 cttccttcggcctttgaatcca 77839



 Score =  107 bits (54), Expect = 4e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 105   agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 164
             |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 78731 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 78672

                                                                         
Query: 165   cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 224
             ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 78671 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 78612

                                                                       
Query: 225   gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 282
             |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 78611 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 78554

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>gb|AC011382.4| Homo sapiens chromosome 5 clone CTB-13H5, complete sequence
          Length = 86829

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 4     ataaagaaaaggcattccaaaaagtg 29
             |||||||| |||||||||||||||||
Sbjct: 50467 ataaagaataggcattccaaaaagtg 50492

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>emb|BX511005.6| Zebrafish DNA sequence from clone DKEY-72N1 in linkage group 5,
             complete sequence
          Length = 139111

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    caaattgtacagtgtacacat 57
             |||||||||||||||||||||
Sbjct: 59485 caaattgtacagtgtacacat 59505

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>gb|AE004686.1| Pseudomonas aeruginosa PAO1, section 247 of 529 of the complete
            genome
          Length = 10905

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 170  tcctcgatgacctctccatcc 190
            |||||||||||||||||||||
Sbjct: 9036 tcctcgatgacctctccatcc 9016

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>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence
          Length = 188691

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     taaagaaaaggcattccaaaa 25
             |||||||||||||||||||||
Sbjct: 24672 taaagaaaaggcattccaaaa 24692

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>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence
          Length = 217373

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 485    ttgtttcttccttctgccttt 505
              |||||||||||||||||||||
Sbjct: 142631 ttgtttcttccttctgccttt 142611

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>ref|XM_483499.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1345

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  tgacctctccatccttgccg 196
            ||||||||||||||||||||
Sbjct: 1050 tgacctctccatccttgccg 1031

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>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence
          Length = 208309

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 243   ggttgccctttccgccgcgccctgcctccttc 274
             ||||||||||||| || | |||||||||||||
Sbjct: 75976 ggttgccctttccccctctccctgcctccttc 76007

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>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence
          Length = 191054

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   atggctggatagccatagcc 372
             ||||||||||||||||||||
Sbjct: 58625 atggctggatagccatagcc 58644

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 484     cttgtttcttccttctgcctttga 507
               |||||||||| |||||||||||||
Sbjct: 1938790 cttgtttcttacttctgcctttga 1938813

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>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence
          Length = 199464

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    agcaacagatagtagcagct 476
              ||||||||||||||||||||
Sbjct: 191521 agcaacagatagtagcagct 191502

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>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial
            mRNA
          Length = 3048

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tcctcgatgacctctccatc 189
            ||||||||||||||||||||
Sbjct: 1370 tcctcgatgacctctccatc 1351

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>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial
            mRNA
          Length = 3048

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tcctcgatgacctctccatc 189
            ||||||||||||||||||||
Sbjct: 1370 tcctcgatgacctctccatc 1351

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>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence
          Length = 171061

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    gagaactcgtcctcctcgat 177
              ||||||||||||||||||||
Sbjct: 170896 gagaactcgtcctcctcgat 170915

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>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence
          Length = 236220

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      agataaagaaaaggcattcc 21
              ||||||||||||||||||||
Sbjct: 140406 agataaagaaaaggcattcc 140387

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>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes
          Length = 5940

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  ctcgtcctcctcgatgacct 182
            ||||||||||||||||||||
Sbjct: 5665 ctcgtcctcctcgatgacct 5646

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>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence
          Length = 219899

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   gagaactcgtcctcctcgat 177
             ||||||||||||||||||||
Sbjct: 33851 gagaactcgtcctcctcgat 33870

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>emb|AL035608.11|HS479J7 Human DNA sequence from clone RP3-479J7 on chromosome Xq21.33-23
             Contains the gene for tenomodulin protein (TNMD), the
             TM4SF6 gene for transmembrane 4 superfamily member 6, the
             5' end of the gene for sushi-repeat protein (SRPUL) and
             two CpG islands, complete sequence
          Length = 97189

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cttgtttcttccttctgcct 503
             ||||||||||||||||||||
Sbjct: 23481 cttgtttcttccttctgcct 23462

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>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains
              a novel gene similar to PPP1R14B (protein phosphatase 1,
              regulatory (inhibitor) subunit 14B), a novel gene similar
              to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1),
              the pc gene for pyruvate carboxylase and three putative
              novel retrotransposons, complete sequence
          Length = 192531

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    tgcctccttcacaaactcgg 284
              ||||||||||||||||||||
Sbjct: 144220 tgcctccttcacaaactcgg 144201

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>gb|AC093905.3| Homo sapiens BAC clone RP11-739C17 from 4, complete sequence
          Length = 184862

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   tctccagatcagcttgcttg 409
             ||||||||||||||||||||
Sbjct: 52882 tctccagatcagcttgcttg 52901

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>gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, complete sequence
          Length = 173917

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   tttcttccttctgcctttga 507
             ||||||||||||||||||||
Sbjct: 54830 tttcttccttctgcctttga 54849

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>gb|AC080066.6| Homo sapiens BAC clone CTD-2321M19 from 7, complete sequence
          Length = 75793

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aagaaaaggcattccaaaaa 26
             ||||||||||||||||||||
Sbjct: 16415 aagaaaaggcattccaaaaa 16396

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 177      tgacctctccatccttgccg 196
                ||||||||||||||||||||
Sbjct: 26540041 tgacctctccatccttgccg 26540060

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>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0702E04
          Length = 190948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   tgacctctccatccttgccg 196
             ||||||||||||||||||||
Sbjct: 88908 tgacctctccatccttgccg 88927

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>dbj|AP000388.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MRI12
          Length = 18212

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    aagaaaaggcattccaaaaa 26
            ||||||||||||||||||||
Sbjct: 9513 aagaaaaggcattccaaaaa 9494

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>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20,
             complete sequence
          Length = 107263

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   tgcctccttcacaaactcgg 284
             ||||||||||||||||||||
Sbjct: 31198 tgcctccttcacaaactcgg 31217

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>dbj|AK119370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H09, full
            insert sequence
          Length = 2945

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  tgacctctccatccttgccg 196
            ||||||||||||||||||||
Sbjct: 1139 tgacctctccatccttgccg 1158

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>dbj|AK073978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full
            insert sequence
          Length = 1345

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  tgacctctccatccttgccg 196
            ||||||||||||||||||||
Sbjct: 1050 tgacctctccatccttgccg 1031

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>tpe|BN000648.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx119 gene for
            class III peroxidase 119 precursor, exons 1-3
          Length = 2477

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  tgacctctccatccttgccg 196
            ||||||||||||||||||||
Sbjct: 2448 tgacctctccatccttgccg 2429

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>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence
          Length = 200503

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    atggctggatagccatagcc 372
              ||||||||||||||||||||
Sbjct: 182782 atggctggatagccatagcc 182801

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>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    ggaccaccgtcggggcgccc 232
              ||||||||||||||||||||
Sbjct: 157627 ggaccaccgtcggggcgccc 157646

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>gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complete sequence
          Length = 218283

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   agcaacagatagtagcagct 476
             ||||||||||||||||||||
Sbjct: 26327 agcaacagatagtagcagct 26308

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>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    aaaactgtatggactcttct 446
              ||||||||||||||||||||
Sbjct: 147074 aaaactgtatggactcttct 147055


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,344,227
Number of Sequences: 3902068
Number of extensions: 4344227
Number of successful extensions: 82392
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82241
Number of HSP's gapped (non-prelim): 144
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result