ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42b04 |
|---|---|
| Clone Library Name | barley_pub |
>NQR1_ORYSA (Q941Z0) Putative NADPH:quinone oxidoreductase 1 (EC 1.6.5.2)| Length = 197 Score = 154 bits (388), Expect = 2e-37 Identities = 71/99 (71%), Positives = 86/99 (86%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLREIGIYLDLHFINKPELHIRAY 314 KNALDWASRG + CWADK AAIV AGG FGGGR+ HLR++G++LDLHFINKPEL ++A+ Sbjct: 100 KNALDWASRGQN-CWADKPAAIVSAGGGFGGGRSQYHLRQVGVFLDLHFINKPELAVKAF 158 Query: 313 EDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQHKE 197 E PPKFD +GNL+DA+ RER+K+VLLSLQAF LRLQ K+ Sbjct: 159 EQPPKFDSDGNLIDAQIRERIKQVLLSLQAFTLRLQKKD 197
>NQR_ARATH (Q9LK88) NADPH:quinone oxidoreductase (EC 1.6.5.2)| Length = 196 Score = 135 bits (340), Expect = 6e-32 Identities = 66/98 (67%), Positives = 77/98 (78%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLREIGIYLDLHFINKPELHIRAY 314 KNALDWASR + WADK AAI+ GG FGGGR+ HLR+IG++LDLHFINKPE + A+ Sbjct: 100 KNALDWASRPPN-VWADKPAAIISTGGGFGGGRSQYHLRQIGVFLDLHFINKPEFTLNAF 158 Query: 313 EDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQHK 200 + P KFD EGNLVD +ERLK+VLLSLQAF LRLQ K Sbjct: 159 QPPQKFDAEGNLVDEVTKERLKQVLLSLQAFTLRLQGK 196
>NQR2_ORYSA (Q941Y8) Putative NADPH:quinone oxidoreductase 2 (EC 1.6.5.2)| Length = 203 Score = 129 bits (324), Expect = 4e-30 Identities = 60/98 (61%), Positives = 78/98 (79%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLREIGIYLDLHFINKPELHIRAY 314 KNALDW SR + CWAD+AAAIV A G GG R+ H+R++G++LD+HFINKPE+ I+A+ Sbjct: 99 KNALDWGSRPPN-CWADRAAAIVSASGGSGGSRSMYHIRQVGVFLDIHFINKPEVFIKAH 157 Query: 313 EDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQHK 200 + P KFD +GNL+D + +E LK +LLSLQAFALRLQ K Sbjct: 158 QPPKKFDSDGNLIDPEIKEELKDMLLSLQAFALRLQGK 195
>NQR_SOLTU (Q8H9D2) NAD(P)H:quinone oxidoreductase (EC 1.6.5.2) (NAD(P)H:QR)| Length = 194 Score = 128 bits (322), Expect = 7e-30 Identities = 60/98 (61%), Positives = 78/98 (79%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAGGDFGGGRASLHLREIGIYLDLHFINKPELHIRAY 314 KNA+DWASR + WADKAAA+V AGG FGGGR+ HLR+IG++LDLHFINKPE + A+ Sbjct: 96 KNAIDWASRPPN-VWADKAAAMVSAGGGFGGGRSQYHLRQIGVFLDLHFINKPEFFLNAF 154 Query: 313 EDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQHK 200 + PPKFD +G L D + ++RL+ VLL+LQA AL+L+ K Sbjct: 155 QQPPKFDSDGVLTDEETKQRLRAVLLALQALALKLKGK 192
>YIEF_SHIFL (P0AGE8) Hypothetical protein yieF| Length = 188 Score = 44.7 bits (104), Expect = 1e-04 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAG-GDFGGGRASLHLREIGIYLDLHFINKPELH--- 326 KNA+DW SR + A K I + G GG R HLR+I ++LD +NKPE Sbjct: 92 KNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGV 151 Query: 325 IRAYEDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQ 206 I+ DP G ++D + L L + F R++ Sbjct: 152 IQNKVDPQ----TGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>YIEF_ECOLI (P0AGE6) Hypothetical protein yieF| Length = 188 Score = 44.7 bits (104), Expect = 1e-04 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAG-GDFGGGRASLHLREIGIYLDLHFINKPELH--- 326 KNA+DW SR + A K I + G GG R HLR+I ++LD +NKPE Sbjct: 92 KNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGV 151 Query: 325 IRAYEDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQ 206 I+ DP G ++D + L L + F R++ Sbjct: 152 IQNKVDPQ----TGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>YIEF_ECO57 (P0AGE7) Hypothetical protein yieF| Length = 188 Score = 44.7 bits (104), Expect = 1e-04 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = -3 Query: 493 KNALDWASRGTHKCWADKAAAIVCAG-GDFGGGRASLHLREIGIYLDLHFINKPELH--- 326 KNA+DW SR + A K I + G GG R HLR+I ++LD +NKPE Sbjct: 92 KNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGV 151 Query: 325 IRAYEDPPKFDGEGNLVDAKARERLKKVLLSLQAFALRLQ 206 I+ DP G ++D + L L + F R++ Sbjct: 152 IQNKVDPQ----TGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>HISX_CLOAB (Q97KI2) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 32.0 bits (71), Expect = 0.92 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +2 Query: 221 EGLQREEHLLEPLPGFG----VDEVPLAVELGRVLVRPDVEL 334 EGL R+E +LE L FG VD + A+E+G V+ +E+ Sbjct: 292 EGLSRKEIILEALRNFGAIILVDSISRAIEIGNVVAPEHLEI 333
>GAT6B_XENLA (P70005) GATA-binding factor 6-B (Transcription factor xGATA-6B)| Length = 391 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +3 Query: 219 AKACSERSTFLSRSLALASTRF---PSPSNLGGSSYALMWSSGLLMKCRSRYIPISRRWS 389 ++A SE S++ S S S+R+ PSP GS+ +SS L + R +Y P++R + Sbjct: 66 SQATSESSSYSSSS-PHPSSRYHYSPSPPMANGSTRDTGYSSSLAVSGRDQYAPLARPLN 124 Query: 390 DALPPPKSP 416 + P +P Sbjct: 125 GSYGSPYTP 133
>PYRB_METKA (Q8TVB2) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 309 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = +2 Query: 221 EGLQREEHLLEPLPGFGVDEVPLAVELGRVLVRPDVELRLVDEVQVQVYPDLAQVERRPA 400 E L+ H+LE L G EV +L +L PD+++ V +Q +++PD + ER Sbjct: 190 EELRMPSHILEELEQIGA-EVEEHRDLEEIL--PDLDVLYVTRIQREMFPDPEEFERVKG 246 Query: 401 SSEV 412 S +V Sbjct: 247 SYKV 250
>FABH_CLOAB (Q97DA2) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 325 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 484 LDWASRGTHKCWADKAAAIVCAGGDFGG 401 LDW RGT + D A A++ GGD G Sbjct: 146 LDWQDRGTCVLFGDGAGAVIIRGGDENG 173
>RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome receptor)| (RRp) Length = 1534 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + A +QG EGAP AP QG+ +E Sbjct: 574 GAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAE 623 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + A +QG EGAP AP QG+ +E Sbjct: 604 GAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAE 653 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + +QG EGAP AP QG+ +E Sbjct: 594 GAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAE 643 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + +QG EGAP AP QG+ +E Sbjct: 564 GAPNQGKKAEGAPNQGKKAEAAPNQGKKAEGAPNQGKKAEGAPNQGKKAE 613 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 Query: 335 GAPHQGVRGPAQVXXXXXXXXRQSQGAAQEGAPLAAGLRAQAPTQGELSE 186 GAP+QG + +QG EGAP AP QG+ +E Sbjct: 544 GAPNQGKKAEGAPNQGKKAEGAPNQGKKAEGAPNQGKKAEAAPNQGKKAE 593
>SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein| Length = 975 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +3 Query: 273 STRFPSPSNLGGSSYALMWSSGLLMKCRSRYIPISRR--WSDALPPPKSPPAQTIAAALS 446 +T PS + + G+S + SSG + S YIP R P P +PP+ + + Sbjct: 520 TTVVPSHTPVSGASSSTQRSSGPVTATSSLYIPAPSRPVTPGGAPEPPTPPSAAAMTSTA 579 Query: 447 AQHLCVPL 470 + L PL Sbjct: 580 SIFLSTPL 587
>GAT6A_XENLA (Q91678) GATA-binding factor 6-A (Transcription factor xGATA-6A)| Length = 391 Score = 29.6 bits (65), Expect = 4.6 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Frame = +3 Query: 219 AKACSERSTFLSRSLALASTRF---PSPSNLGGSSYALMWSSGLLMKCRSRYIPISR 380 ++A SE S+F + S S+R+ PSP GS+ +SS L + R +Y P++R Sbjct: 66 SQATSESSSF-NNSSPHTSSRYHYPPSPPMHNGSTRDTGYSSSLTVSSRDQYTPLAR 121
>MUTS_SYNY3 (P73769) DNA mismatch repair protein mutS| Length = 878 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 382 LREIGIYLDLHFINKPELHIRAYEDPPKFDGEGNLVDAKARERLKKVLLSLQ 227 L E+G Y+ H + P LHIR EGNL+ + L ++ SL+ Sbjct: 437 LEELGKYVLAHIVENPPLHIR----------EGNLIRSGVNPTLDEMRQSLE 478
>MTA1_HUMAN (Q13330) Metastasis-associated protein MTA1| Length = 715 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +3 Query: 321 LMWSSGLLMKCRSRYIPISRRWSDALPPPKSPPA 422 L+ SS R Y PI+ R S ALPP PPA Sbjct: 671 LLSSSETKRAARRPYKPIALRQSQALPPRPPPPA 704
>HOFB_HAEIN (P44622) Protein transport protein hofB homolog| Length = 464 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -3 Query: 430 IVCAGGDFGGGRASLHLREIGIYLDLHFINKPELHIRAYEDPPKFDGEG 284 ++ G G G++ I +Y L ++N P+ HI EDP + + +G Sbjct: 259 LILVTGPTGSGKS------ISLYTALQWLNTPDKHIMTAEDPIEIELDG 301 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,344,009 Number of Sequences: 219361 Number of extensions: 1140341 Number of successful extensions: 4622 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4606 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
