ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42b03 |
|---|---|
| Clone Library Name | barley_pub |
>A115_TOBAC (P40691) Auxin-induced protein PCNT115| Length = 307 Score = 75.1 bits (183), Expect = 9e-14 Identities = 33/42 (78%), Positives = 37/42 (88%) Frame = -1 Query: 477 EMAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVR 352 EMA RKGCT SQLALAWVHH+G DV PIPGTTK+ NLNQN++ Sbjct: 261 EMAVRKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNMK 302
>IN22_MAIZE (P49249) IN2-2 protein| Length = 306 Score = 59.7 bits (143), Expect = 4e-09 Identities = 24/49 (48%), Positives = 32/49 (65%) Frame = -3 Query: 478 RDGGEEGLHVVAARASLGSPPGNRCAPHTWHDQSWEFEPERESDVCAAH 332 RDG E +H + AR LGSPP R PHTWH+++ + +PER VC A+ Sbjct: 256 RDGSTERMHAITARVGLGSPPRKRRLPHTWHNKNRQLQPERGGTVCEAY 304
>YAKC_SCHPO (Q09923) Aldo-keto reductase yakc [NADP+] (EC 1.1.1.-)| Length = 340 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -1 Query: 477 EMAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELESYA 298 ++A T QL+LAW+ +G D+ PIPGT +V L +N A+ V+L + E+ Sbjct: 254 KIATANNITPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIREAC 313 Query: 297 AMDAVQGDRY 268 V G RY Sbjct: 314 DNAEVIGARY 323
>YDBC_ECOLI (P25906) Putative oxidoreductase ydbC (EC 1.-.-.-)| Length = 286 Score = 45.4 bits (106), Expect = 8e-05 Identities = 22/58 (37%), Positives = 36/58 (62%) Frame = -1 Query: 480 SEMAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELE 307 S++AA G T Q+ALAW+ R ++ IPGT+ V +L +N+ A + L E ++ L+ Sbjct: 224 SDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLD 281
>STCV_EMENI (Q00727) Putative sterigmatocystin biosynthesis dehydrogenase stcV| (EC 1.1.1.-) Length = 387 Score = 42.4 bits (98), Expect = 6e-04 Identities = 21/64 (32%), Positives = 36/64 (56%) Frame = -1 Query: 480 SEMAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELESY 301 +E+ RKG ++ +ALA++ H+ V P+ G V L N+ ++ V+L EE+ E+E Sbjct: 269 TEVGERKGVAAAAIALAYLLHKSPYVFPVIGCRTVEQLEANITSLGVELSDEEIYEIEDT 328 Query: 300 AAMD 289 D Sbjct: 329 IPFD 332
>AAD14_YEAST (P42884) Putative aryl-alcohol dehydrogenase AAD14 (EC 1.1.1.-)| Length = 376 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = -1 Query: 480 SEMAARKGCTS-SQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELES 304 +++A G S + +A+A+V + +V P+ G K+ +L QN+ A+S++L E++ LES Sbjct: 280 TKIAEEHGTESVTAIAIAYVRSKAKNVFPLIGGRKIEHLKQNIEALSIKLTPEQIEYLES 339 Query: 303 YAAMD 289 D Sbjct: 340 IVPFD 344
>AAD16_YEAST (P43546) Putative aryl-alcohol dehydrogenase AAD16 (EC 1.1.1.-)| Length = 152 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = -1 Query: 480 SEMAARKGCTS-SQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELES 304 +++A G S + +A+A+V + +V P+ G K+ +L QN+ A+S++L E++ LES Sbjct: 57 AKVAEEHGTESVTAIAIAYVRSKAKNVFPLVGGRKIEHLKQNIEALSIKLTPEQIKYLES 116 Query: 303 YAAMD 289 D Sbjct: 117 IIPFD 121
>AAD4_YEAST (Q07747) Probable aryl-alcohol dehydrogenase AAD4 (EC 1.1.1.-)| Length = 329 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = -1 Query: 480 SEMAARKGCTS-SQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELES 304 +++A G S + +A+A+V + +V P+ G K+ +L QN+ A+S++L E++ LES Sbjct: 234 AKVAEEHGTESVTAIAIAYVRSKAKNVFPLVGGRKIEHLKQNIEALSIKLTPEQIEYLES 293 Query: 303 YAAMD 289 D Sbjct: 294 IIPFD 298
>AAD10_YEAST (P47182) Putative aryl-alcohol dehydrogenase AAD10 (EC 1.1.1.-)| Length = 288 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = -1 Query: 441 LALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELESYAAMD 289 +A+A+V + V P+ G K+ +L QN+ A+S++L E++ LES D Sbjct: 206 IAIAYVRSKAKHVFPLVGGRKIEHLKQNIEALSIKLTPEQIKYLESIVPFD 256
>YAJO_ECOLI (P77735) Hypothetical oxidoreductase yajO (EC 1.-.-.-)| Length = 324 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/52 (36%), Positives = 33/52 (63%) Frame = -1 Query: 459 GCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELES 304 G T +Q+ALAW+ + PI GT++ L++ + A+ + L E++AELE+ Sbjct: 262 GATRAQVALAWLLSKPGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELET 313
>PLR1_SCHPO (O14295) Pyridoxal reductase (EC 1.1.1.65) (PL reductase) (PL-red)| Length = 333 Score = 37.0 bits (84), Expect = 0.027 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = -1 Query: 477 EMAARKGCTSSQLALAWVHHRGTD-VRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELESY 301 ++A + G T + +L ++ G V PIPG+T V N+ A++ L E+ E + Sbjct: 253 QLAKKFGMTMPEFSLLFIMASGNGLVIPIPGSTSVSRTKSNLNALNKSLSPEQFKEAKEV 312 Query: 300 AAMDAVQGDRYHSTFLNT 247 + + G RY+ T Sbjct: 313 LSKYPIYGLRYNEQLAGT 330
>YGHZ_ECO57 (Q8X529) Hypothetical protein yghZ| Length = 346 Score = 35.0 bits (79), Expect = 0.10 Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = -1 Query: 480 SEMAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAM-SVQLMVEEMAELES 304 +EMA ++G + +Q+AL+W+ + G ++ L +NV+A+ ++ EE+A+++ Sbjct: 271 NEMAQQRGQSMAQMALSWLLKDERVTSVLVGASRAEQLEENVQALNNLTFSTEELAQIDQ 330 Query: 303 YAA 295 + A Sbjct: 331 HIA 333
>YDJG_ECOLI (P77256) Hypothetical oxidoreductase ydjG (EC 1.-.-.-)| Length = 326 Score = 33.9 bits (76), Expect = 0.23 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQL------MVEEMAE 313 + AR CT LALAW+ + + + G T + +NV A+++ L ++ EMAE Sbjct: 263 LCARYQCTIPTLALAWILKQSDLISILSGATAPEQVRENVAALNINLSDADATLMREMAE 322
>YGHZ_ECOLI (Q46851) Hypothetical protein yghZ| Length = 346 Score = 33.5 bits (75), Expect = 0.30 Identities = 16/63 (25%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = -1 Query: 480 SEMAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAM-SVQLMVEEMAELES 304 +EMA ++G + +Q+AL+W+ + G ++ L +NV+A+ ++ +E+A+++ Sbjct: 271 NEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQ 330 Query: 303 YAA 295 + A Sbjct: 331 HIA 333
>RELA_SHIFL (P0AG23) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 33.1 bits (74), Expect = 0.39 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Frame = -1 Query: 426 VHHRGTDVRPIPGTTKVGNLNQNVRAMSV-QLMVEEMAELESYA---AMDAVQGDRYHST 259 +HH +PIPG VG + Q R +SV + E++AEL S+A +DAV G+ Y + Sbjct: 606 MHHIARCCQPIPGDEIVGFITQG-RGISVHRADCEQLAELRSHAPERIVDAVWGESYSAG 664 Query: 258 F 256 + Sbjct: 665 Y 665
>RELA_ECOLI (P0AG20) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 33.1 bits (74), Expect = 0.39 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Frame = -1 Query: 426 VHHRGTDVRPIPGTTKVGNLNQNVRAMSV-QLMVEEMAELESYA---AMDAVQGDRYHST 259 +HH +PIPG VG + Q R +SV + E++AEL S+A +DAV G+ Y + Sbjct: 606 MHHIARCCQPIPGDEIVGFITQG-RGISVHRADCEQLAELRSHAPERIVDAVWGESYSAG 664 Query: 258 F 256 + Sbjct: 665 Y 665
>RELA_ECOL6 (P0AG21) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 33.1 bits (74), Expect = 0.39 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Frame = -1 Query: 426 VHHRGTDVRPIPGTTKVGNLNQNVRAMSV-QLMVEEMAELESYA---AMDAVQGDRYHST 259 +HH +PIPG VG + Q R +SV + E++AEL S+A +DAV G+ Y + Sbjct: 606 MHHIARCCQPIPGDEIVGFITQG-RGISVHRADCEQLAELRSHAPERIVDAVWGESYSAG 664 Query: 258 F 256 + Sbjct: 665 Y 665
>RELA_ECO57 (P0AG22) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 33.1 bits (74), Expect = 0.39 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%) Frame = -1 Query: 426 VHHRGTDVRPIPGTTKVGNLNQNVRAMSV-QLMVEEMAELESYA---AMDAVQGDRYHST 259 +HH +PIPG VG + Q R +SV + E++AEL S+A +DAV G+ Y + Sbjct: 606 MHHIARCCQPIPGDEIVGFITQG-RGISVHRADCEQLAELRSHAPERIVDAVWGESYSAG 664 Query: 258 F 256 + Sbjct: 665 Y 665
>EX7L_AGRT5 (Q8UIM4) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 532 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 156 DTKHQHSDRFP*YPVKWLSRMRGEGS 233 D H+ SDRFP + V W +++GEGS Sbjct: 162 DILHRISDRFPVHVVVWPVKVQGEGS 187
>YCCK_BACSU (P46905) Hypothetical oxidoreductase yccK (EC 1.-.-.-)| Length = 310 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEM 319 +A K ++ +ALAW+ R IPG + L N++ ++++L +E+ Sbjct: 251 VAEEKQADTAHVALAWLLTRPAIDAIIPGAKRPEQLQDNLKTLNIELTEDEV 302
>DPOL_RCMVM (Q85428) DNA polymerase (EC 2.7.7.7)| Length = 1173 Score = 29.3 bits (64), Expect = 5.6 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -3 Query: 196 GYHGNRSLC*CFVSLV*SICKSNNF-MSTLCMDGIMEPPI 80 GYH N L F SL SI SNN STL +DG PP+ Sbjct: 640 GYHHNPILVFDFASLYPSIIMSNNLCYSTLLVDG--SPPV 677
>PLA2R_BOVIN (P49259) 180 kDa secretory phospholipase A2 receptor precursor| (PLA2-R) Length = 1463 Score = 28.9 bits (63), Expect = 7.3 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 31/132 (23%) Frame = -1 Query: 411 TDVRPIPGTTKVGN-----LNQNVR---AMSVQLMVEEMAELESYAAMDAVQGDRYHSTF 256 +D+ PIP T + GN +N N+ A+ LM AEL S D+YH +F Sbjct: 1110 SDMYPIPNTLEYGNRTYKIINANMTWYTALKTCLM--HGAELASIT-------DQYHQSF 1160 Query: 255 LNT-----------------------WKDSETPPLSSWKAT*LDITGIDHYADASYHWFK 145 L W D + WK G +AD S W Sbjct: 1161 LTVILNRVGYAHWIGLFTEDNGLSFDWSDGTKSSFTFWKDDESSFLGDCVFADTSGRWSS 1220 Query: 144 VFASQIIS*ALC 109 + A+C Sbjct: 1221 TACESYLQGAIC 1232
>KCAB2_HUMAN (Q13303) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) (HKvbeta2) Length = 367 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSV 340 +A R GCT QLA+AW + G + L +N+ A+ V Sbjct: 295 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQV 339
>KCAB2_BOVIN (Q27955) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) Length = 367 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSV 340 +A R GCT QLA+AW + G + L +N+ A+ V Sbjct: 295 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASSADQLMENIGAIQV 339
>GLXK_HAEIN (P44507) Glycerate kinase (EC 2.7.1.31)| Length = 378 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 202 SGFPG*EGRGLGVLPGVEERAVVPIALDRIH 294 +G G G GL +LP V+ +A + I LDR+H Sbjct: 247 AGAAGGMGGGLLLLPSVQLKAGIQIVLDRLH 277
>TRPD_COREF (Q8FLJ8) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 342 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -1 Query: 426 VHHRGTDVRPIPGTTKVGNLNQNVRAMSVQLMVEEMAELESYAAMDAVQGD 274 VH GTD + GTT+V L + +S ++ EE+ +E D V GD Sbjct: 222 VHGAGTDEIAVHGTTQVWELKADGEIISYEITPEELG-VERCDLTDLVGGD 271
>KCAB_ORYSA (Q40648) Probable voltage-gated potassium channel beta subunit| (K(+) channel beta subunit) Length = 328 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSV 340 +A+ G + +QLA+AW I G TK + +N++A+ V Sbjct: 257 IASELGVSLAQLAIAWCASNPNVSSVITGATKENQIVENMKALDV 301
>GIDA_XYLFT (Q87DB3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Frame = -2 Query: 302 TPPWMRSKAIGTTARSSTPGRTPRPL-------PSHPGKPLNWISR 186 TPP + + + TA PG PRP SHP + WI++ Sbjct: 202 TPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247
>GIDA_XYLFA (Q9PBN4) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Frame = -2 Query: 302 TPPWMRSKAIGTTARSSTPGRTPRPL-------PSHPGKPLNWISR 186 TPP + + + TA PG PRP SHP + WI++ Sbjct: 202 TPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQVSCWITQ 247
>KCAB2_XENLA (Q9PTM5) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) Length = 367 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSV 340 +A R GCT QLA+AW + G + L +N+ A+ V Sbjct: 295 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLLENIGAIQV 339
>KCAB2_RAT (P62483) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) Length = 367 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSV 340 +A R GCT QLA+AW + G + L +N+ A+ V Sbjct: 295 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 339
>KCAB2_MOUSE (P62482) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) (Neuroimmune protein F5) Length = 367 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 474 MAARKGCTSSQLALAWVHHRGTDVRPIPGTTKVGNLNQNVRAMSV 340 +A R GCT QLA+AW + G + L +N+ A+ V Sbjct: 295 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 339
>Y2045_PSEAE (Q9I270) UPF0161 protein PA2045| Length = 86 Score = 28.5 bits (62), Expect = 9.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -3 Query: 409 RCAPHTWHDQSWEFEPERESDVCAAH 332 RC H WH ++ PER+ CA H Sbjct: 56 RC--HPWHPGGYDPVPERQEQACACH 79
>HBA_CARAU (P02018) Hemoglobin alpha subunit (Hemoglobin alpha chain)| (Alpha-globin) Length = 142 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 3 PNTKVYFSHVSVIN*SWGEIVLHEQTIGGSMIPSMHRV 116 P TK YFSH S ++ G + H +TI G++ ++ ++ Sbjct: 37 PQTKTYFSHWSDLSPGSGPVKKHGKTIMGAVGDAVSKI 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,694,689 Number of Sequences: 219361 Number of extensions: 1448547 Number of successful extensions: 4258 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4256 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
