>RGS20_HUMAN (O76081) Regulator of G-protein signaling 20 (RGS20) (Regulator of|
           Gz-selective protein signaling 1) (Gz-selective
           GTPase-activating protein) (G(z)GAP)
          Length = 388

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 320 HVLRRPPPEASRRHLPRAP 376
           H+LRRPPPEA RR L  +P
Sbjct: 88  HLLRRPPPEAPRRRLDFSP 106

>TIRAP_MOUSE (Q99JY1) Toll-interleukin 1 receptor domain-containing adapter|
           protein (TIR domain-containing adapter protein) (MyD88
           adapter-like protein) (Adaptor protein Wyatt)
          Length = 241

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 391 PLAPARRARKMSSGSFRWRSTEDVAACHAESSLVA 287
           P +P       SS S RW    DV  CH+E  L A
Sbjct: 85  PTSPPTHVDSSSSSSGRWSKDYDVCVCHSEEDLEA 119

>TIRAP_HUMAN (P58753) Toll-interleukin 1 receptor domain-containing adapter|
           protein (TIR domain-containing adapter protein) (MyD88
           adapter-like protein) (Adaptor protein Wyatt)
          Length = 221

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 355 SGSFRWRSTEDVAACHAESSLVA 287
           SGS RW    DV  CH+E  LVA
Sbjct: 77  SGSSRWSKDYDVCVCHSEEDLVA 99

>GLMU_THEFY (Q47SW5) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 484

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 322 VAACHAESSLVAVMAQALAHRVGHVWVVDEVSGALVGVVSCADVLAVLR--DHLRPECYA 149
           VAA  AE + V +++  +    G+  +V + +GA+ G+V  AD     R  D +    YA
Sbjct: 126 VAAHEAEGNAVTILSARVPDPTGYGRIVRDAAGAVTGIVEHADATEEQRAVDEINSGMYA 185

Query: 148 DD 143
            D
Sbjct: 186 FD 187

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 26.2 bits (56), Expect(2) = 2.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 313 TPPRPPSTATGSFPTTSSSRAWQAPMANTP 402
           TP   P+T+T S PTTS++ A  A   + P
Sbjct: 91  TPSPVPTTSTTSAPTTSTTSASTASTTSGP 120



 Score = 22.7 bits (47), Expect(2) = 2.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 207 TTPTRAPLTSSTTQTCPTRCASAWAMT-----ATSELSA*HAATSS 329
           TT T +PLT+STT    T   S    T      TS  SA   +T+S
Sbjct: 9   TTSTISPLTTSTTSAPITSMPSGPGTTPSPVPTTSTTSAPTTSTTS 54

>SNF4_YEAST (P12904) Nuclear protein SNF4 (Regulatory protein CAT3)|
          Length = 322

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -2

Query: 328 EDVAACHAESSLVAVMAQALAHRVGHVWVVDEVSGALVGVVSCADVL 188
           E V  C     L  +M      RV   +VVD+V G LVGV++ +D+L
Sbjct: 269 EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDIL 314

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 207 TTPTRAPLTSSTTQTCPTRCASAWAMTATSELSA 308
           TTPT +  T +TT   PT  A+  A+T  +  SA
Sbjct: 111 TTPTASTTTPTTTTAAPTTAATTTAVTTAASTSA 144

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 207 TTPTRAPLTSSTTQTCPTRCASAWAMTATSELSA 308
           TTPT +  T +TT   PT  A+  A+T  +  SA
Sbjct: 111 TTPTASTTTPTTTTAAPTTAATTTAVTTAASTSA 144

>PRLPB_RAT (P24800) Placental prolactin-like protein B precursor (PRL-like|
           protein B) (PLP-B)
          Length = 234

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 343 RWRSTEDVAACHAESSLVAVMAQALAHRVGHVWVVDEVSGAL 218
           RW    D+ ACH     +AV  +    R+G V++V E+ G L
Sbjct: 83  RWFPERDLTACHRSPFTIAVSKEGTQQRLG-VFLVKEMIGML 123

>SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor|
          Length = 2193

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +2

Query: 266 RERLGHDGDQRTLSMTRRHVLRRPPPEASRRHLPRAPGRRQWQTLLVR 409
           R R GH  D     +  R   R P P A RR     PGR  W  LL++
Sbjct: 27  RSRTGHHCDPECPGL--RAAPRTPGPGAGRRAAKLRPGRGWWALLLLQ 72

>AAKG3_MOUSE (Q8BGM7) 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK|
           gamma-3 chain) (AMPK gamma3)
          Length = 489

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 328 EDVAACHAESSLVAVMAQALAHRVGHVWVVDEVSGALVGVVSCADVLAVL 179
           E V +C    SL  V+ +    +V  + +VDE    L+GVVS +D+L  L
Sbjct: 429 EGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQH-LLGVVSLSDILQAL 477

>AAKG3_HUMAN (Q9UGI9) 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK|
           gamma-3 chain) (AMPK gamma3)
          Length = 489

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 328 EDVAACHAESSLVAVMAQALAHRVGHVWVVDEVSGALVGVVSCADVLAVL 179
           E V +C    SL  V+ +    +V  + +VDE    L+GVVS +D+L  L
Sbjct: 429 EGVLSCQPHESLGEVIDRIAREQVHRLVLVDETQH-LLGVVSLSDILQAL 477

>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3|
          Length = 299

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 316 PPRPPSTATGSFPTTSSSRAWQAPMANTP 402
           PP PP+T T   P T+++ A   P   TP
Sbjct: 180 PPPPPATTTAPPPATTTTAAAPPPTTTTP 208

>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3|
          Length = 299

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 316 PPRPPSTATGSFPTTSSSRAWQAPMANTP 402
           PP PP+T T   P T+++ A   P   TP
Sbjct: 180 PPPPPATTTAPPPATTTTAAAPPPTTTTP 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.125    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,372,240
Number of Sequences: 219361
Number of extensions: 1099587
Number of successful extensions: 4115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4100
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)