ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart42b01 |
|---|---|
| Clone Library Name | barley_pub |
>EPM2A_RAT (Q91XQ2) Laforin (EC 3.1.3.48) (EC 3.1.3.16) (Lafora PTPase)| (LAFPTPase) (Fragment) Length = 327 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 3 TLNLASLLRGVHCLLDEHYITSL-LTNEGLHMYNNMSNVSGRHAMH 137 T N +L+ GV+CL H+I + TNE H + N++G AMH Sbjct: 107 TYNENNLVDGVYCLPVGHWIEATGHTNEMKHTTDFYFNIAGHQAMH 152
>NMDE1_RAT (Q00959) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 201 FCKHGDVKEKSHKLQHGS------YTHHRSCVYS-PQPRGHNIPQAQWRCNLCYSMCYLY 359 + KH +K+K GS TH RSC+ + P GH ++ ++C+ C M LY Sbjct: 1187 YAKHFTLKDKGSPHSEGSDRYRQNSTHCRSCLSNLPTYSGHFTMRSPFKCDACLRMGNLY 1246
>NMDE1_MOUSE (P35436) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 201 FCKHGDVKEKSHKLQHGS------YTHHRSCVYS-PQPRGHNIPQAQWRCNLCYSMCYLY 359 + KH +K+K GS TH RSC+ + P GH ++ ++C+ C M LY Sbjct: 1187 YAKHFTLKDKGSPHSEGSDRYRQNSTHCRSCLSNLPTYSGHFTMRSPFKCDACLRMGNLY 1246
>EPM2A_HUMAN (O95278) Laforin (EC 3.1.3.48) (EC 3.1.3.16) (Lafora PTPase)| (LAFPTPase) Length = 331 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +3 Query: 3 TLNLASLLRGVHCLLDEHYITSL-LTNEGLHMYNNMSNVSGRHAMH 137 T N +L+ GV+CL H+I + TNE H + N++G AMH Sbjct: 111 TYNENNLVDGVYCLPIGHWIEATGHTNEMKHTTDFYFNIAGHQAMH 156
>IL4RA_MOUSE (P16382) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (IL-4-binding protein) (IL4-BP)] Length = 810 Score = 30.4 bits (67), Expect = 1.9 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Frame = -2 Query: 333 GCSAIVPVECCGLWAVVSTRRICDVCMIRVVTCEIFLSHHHACKIK---HYRVAFGSFSR 163 GC ++ V G V+ C IR TCE FL C + HYR+ F FS Sbjct: 13 GCLILLLVTGSGSIKVLG-EPTCFSDYIRTSTCEWFLDSAVDCSSQLCLHYRLMFFEFSE 71 Query: 162 GLN*GQIQGALRVCLRHL 109 L A VC+ H+ Sbjct: 72 NLTCIPRNSASTVCVCHM 89
>VATC_MANSE (Q9U5N1) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 385 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 3 TLNLASLLRGVHCLLDEHYITSLLTNEGLHMYNN 104 T NLA L++ H +LD Y+T+LL M+N+ Sbjct: 162 TRNLADLVKKEHFILDSEYLTTLLVIVPKSMFND 195
>LECC_PHYAM (Q9AYP9) Lectin-C precursor (PL-C)| Length = 194 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -2 Query: 423 KQVEGARHHQPPCNSKDGWWCDTSNTYCNRGCSAIVPVECCG 298 K+ G H C S+ GW C S+ +C GC + CG Sbjct: 91 KEFGGKECHDELCCSQYGW-CGNSDGHCGEGCQSQCSYWRCG 131
>HPLN2_HUMAN (Q9GZV7) Hyaluronan and proteoglycan link protein 2 precursor| (Brain link protein 1) Length = 340 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +1 Query: 292 PEATTFHRHNGAATSVTVCVTCITPPAIFTVAWWLVVPGSL 414 P H H GA T+ CV TPP+ + V W V PG L Sbjct: 40 PIHEVIHSHRGA-TATLPCVLGTTPPS-YKVRWSKVEPGEL 78
>LECB_PHYAM (Q9AVB0) Lectin-B precursor (PL-B)| Length = 361 Score = 28.9 bits (63), Expect = 5.4 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 Query: 387 CNSKDGWWCDTSNTYCNRGCSA 322 C SKDGW C ++ +C GC + Sbjct: 102 CCSKDGW-CGNTDAHCGEGCQS 122
>PHF10_XENLA (Q63ZP1) PHD finger protein 10| Length = 417 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -2 Query: 390 PCNSKDGWWCDTSNTYCNRGCSAIVPVECCGLWAVVSTRRICDVC 256 P + ++ +CDT C+RG C GL A+ S R ICD C Sbjct: 361 PHHEEEMMFCDT----CDRGYHTF----CVGLGALPSGRWICDCC 397
>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)| (Fragment) Length = 1078 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = +3 Query: 267 RSCVYSPQPRGHNIPQAQWRCNLCYSMC-----YLYHTTSHLY 380 RSC P + Q +W+CNLCY + +LY+ + +Y Sbjct: 417 RSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFLYNPLTRVY 459
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = +3 Query: 267 RSCVYSPQPRGHNIPQAQWRCNLCYSMC-----YLYHTTSHLY 380 RSC P + + Q +W+CNLCY + ++Y+ + +Y Sbjct: 429 RSCRTYINPFVNFLDQRRWKCNLCYRVNDVPEEFMYNPLTRVY 471
>EPN4_MOUSE (Q99KN9) Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin)| Length = 631 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/30 (33%), Positives = 14/30 (46%) Frame = +1 Query: 88 CTCTITCQMSQADTQCTLNLASVKSSTERA 177 C CT TC S T +N + ++S A Sbjct: 10 CVCTCTCAFSLCSTNVVMNYSEIESKVREA 39
>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)| Length = 1268 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 267 RSCVYSPQPRGHNIPQAQWRCNLCY 341 RSC P I Q +W+CNLCY Sbjct: 606 RSCRTYINPFVSFIDQRRWKCNLCY 630
>NTAN1_MOUSE (Q64311) Protein N-terminal asparagine amidohydrolase (EC 3.5.1.-)| (Protein NH2-terminal asparagine deamidase) (N-terminal Asn amidase) (NTN-amidase) (PNAD) (Protein NH2-terminal asparagine amidohydrolase) (PNAA) Length = 309 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 91 TCTITCQMSQADTQCTLNLASVKSSTERAEC 183 TC C S + L ++S+KS +E AEC Sbjct: 87 TCLTHCDGSDTKAEVPLIMSSIKSFSEHAEC 117
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 3 TLNLASLLRGVHCLLDEHYITSLL 74 T NLA L++ H +LD Y+T+LL Sbjct: 490 TRNLADLVKKEHFILDSEYLTTLL 513
>NMDE1_PANTR (Q5IS45) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +3 Query: 201 FCKHGDVKEK-------SHKLQHGSYTHHRSCVYS-PQPRGHNIPQAQWRCNLCYSMCYL 356 + KH +K+K S + + S TH RSC+ + P GH ++ ++C+ C M L Sbjct: 1187 YSKHFTLKDKGSPHSETSERYRQNS-THCRSCLSNLPTYSGHFTMRSPFKCDACLRMGNL 1245 Query: 357 Y 359 Y Sbjct: 1246 Y 1246
>NMDE1_HUMAN (Q12879) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) (hNR2A) Length = 1464 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +3 Query: 201 FCKHGDVKEK-------SHKLQHGSYTHHRSCVYS-PQPRGHNIPQAQWRCNLCYSMCYL 356 + KH +K+K S + + S TH RSC+ + P GH ++ ++C+ C M L Sbjct: 1187 YSKHFTLKDKGSPHSETSERYRQNS-THCRSCLSNMPTYSGHFTMRSPFKCDACLRMGNL 1245 Query: 357 Y 359 Y Sbjct: 1246 Y 1246
>ICLR_SALTY (P17430) Acetate operon repressor| Length = 274 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 45 LDEHYITSLLTNEGLHMYNNMSNVSGRH 128 L E +TSLL +GLH Y + + VS H Sbjct: 169 LSEEQVTSLLHRKGLHAYTHATLVSPLH 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,486,528 Number of Sequences: 219361 Number of extensions: 1401671 Number of successful extensions: 3747 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3743 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
