ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPYR_HORVD (O23979) Soluble inorganic pyrophosphatase (EC 3.6.1.... 32 0.37
2IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.... 32 0.37
3C71AL_ARATH (Q9STL2) Cytochrome P450 71A21 (EC 1.14.-.-) 31 0.62
4C71AP_ARATH (Q9STK8) Cytochrome P450 71A25 (EC 1.14.-.-) 30 1.4
5IPYR_SOLTU (Q43187) Soluble inorganic pyrophosphatase (EC 3.6.1.... 30 1.8
6C71BK_ARATH (Q9LTM3) Cytochrome P450 71B20 (EC 1.14.-.-) 29 3.1
7IPYR_ARATH (P21216) Soluble inorganic pyrophosphatase (EC 3.6.1.... 29 3.1
8C71BJ_ARATH (Q9LTM4) Cytochrome P450 71B19 (EC 1.14.-.-) 28 4.0
9Y1105_METKA (Q8TWD0) UPF0272 protein MK1105 28 4.0
10HEMH1_SHEON (Q8EFF4) Ferrochelatase 1 (EC 4.99.1.1) (Protoheme f... 28 5.3
11SYIM_MACFA (Q4R646) Isoleucyl-tRNA synthetase, mitochondrial pre... 28 5.3
12HMCT_HELFE (Q9RQB4) Cadmium, zinc and cobalt-transporting ATPase... 28 6.9
13SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial pre... 27 9.0

>IPYR_HORVD (O23979) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 215

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 392 EAIQHSMDLYATYICEGLRR 333
           EAIQ+SMDLYA YI + LR+
Sbjct: 196 EAIQYSMDLYAQYILQSLRQ 215



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>IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 214

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 392 EAIQHSMDLYATYICEGLRR 333
           EAIQ+SMDLYA YI + LR+
Sbjct: 195 EAIQYSMDLYAQYILQSLRQ 214



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>C71AL_ARATH (Q9STL2) Cytochrome P450 71A21 (EC 1.14.-.-)|
          Length = 490

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 387 HPALHGSLCHL-HLRGPEKVVHLPAVPVTTCSRNDVDEEIV 268
           HP  H SLC L H  GP  ++HL  VPV   S  DV  +I+
Sbjct: 51  HP--HRSLCSLSHRYGPLMLLHLGRVPVLVVSSADVARDIL 89



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>C71AP_ARATH (Q9STK8) Cytochrome P450 71A25 (EC 1.14.-.-)|
          Length = 490

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 375 HGSLCHLHLR-GPEKVVHLPAVPVTTCSRNDVDEEIV 268
           H SLC L  R GP  ++HL  VPV   S  D+ +EI+
Sbjct: 51  HRSLCDLSRRYGPLMLLHLGRVPVLIVSSADMAQEIL 87



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>IPYR_SOLTU (Q43187) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 211

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 389 AIQHSMDLYATYICEGLRR 333
           AIQ+SMDLYA YI   LR+
Sbjct: 193 AIQYSMDLYAEYILHSLRK 211



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>C71BK_ARATH (Q9LTM3) Cytochrome P450 71B20 (EC 1.14.-.-)|
          Length = 502

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 375 HGSLCHLHLR-GPEKVVHLPAVPVTTCSRNDVDEEIV 268
           H SL HL  R GP  ++H   VPVT  S  +  EE++
Sbjct: 51  HRSLQHLAERYGPVMLLHFGFVPVTVVSSREAAEEVL 87



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>IPYR_ARATH (P21216) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 218

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 392 EAIQHSMDLYATYICEGLRR 333
           +AI+ SMDLYA YI  GL+R
Sbjct: 199 DAIKDSMDLYAAYIKAGLQR 218



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>C71BJ_ARATH (Q9LTM4) Cytochrome P450 71B19 (EC 1.14.-.-)|
          Length = 502

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 375 HGSLCHLHLR-GPEKVVHLPAVPVTTCSRNDVDEEIV 268
           H SL HL  R GP  ++H   VP+T  S  +  EE++
Sbjct: 51  HRSLQHLAERYGPVMLLHFGFVPITVVSSREAAEEVL 87



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>Y1105_METKA (Q8TWD0) UPF0272 protein MK1105|
          Length = 395

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 396 LRGHPALHGSLCHLH-LRGPEKVVHLPAVPVTTCSRNDVDEEIVP 265
           LR    +HG LCHLH L   + VV L          N    E++P
Sbjct: 104 LRAEERVHGDLCHLHELGSSDTVVDLVGTAALLEDLNPKASEVLP 148



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>HEMH1_SHEON (Q8EFF4) Ferrochelatase 1 (EC 4.99.1.1) (Protoheme ferro-lyase 1)|
           (Heme synthetase 1)
          Length = 348

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 390 GHPALHGSLCHLHLRGPEKVVHLPAVPVTTCS 295
           G+P++      L  +G E++V LP  P  +CS
Sbjct: 124 GNPSIESGFAKLKAQGAERIVVLPLYPQYSCS 155



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>SYIM_MACFA (Q4R646) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) (Fragment)
          Length = 993

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 225 YNTKQECKV---CIVYEAQFLHQHRSSSKW*LAPPADVLPSQALANVGG 362
           + TK E  +    I +  + + QH S   W L PP  +LP + L+ VGG
Sbjct: 518 HKTKDEYLINSQTIEHIVKLVEQHGSDVWWTL-PPEQLLPKEVLSEVGG 565



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>HMCT_HELFE (Q9RQB4) Cadmium, zinc and cobalt-transporting ATPase (EC 3.6.3.3)|
           (EC 3.6.3.5)
          Length = 681

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 363 CHLHL--RGPEKVVHLPAVPVTTCSRNDVDEEIVPHKQYILYILV 235
           CH HL   G +K++H   +P  TCS       +    ++I YI+V
Sbjct: 460 CHSHLIIAGNDKMLHKYNIPHDTCSLEGTIVHVAVDGKHIGYIVV 504



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>SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1012

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 270 QFLHQHRSSSKW*LAPPADVLPSQALANVGG 362
           + + QH S   W L PP  +LP + L+ VGG
Sbjct: 555 KLVEQHGSDIWWTL-PPEQLLPKEVLSEVGG 584


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,149,918
Number of Sequences: 219361
Number of extensions: 1101635
Number of successful extensions: 2040
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2040
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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