ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monode... 777 0.0
2gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full... 359 5e-96
3ref|XM_467388.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
4gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 60 6e-06
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
6dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
7dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
8dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
9dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
10gb|AY106646.1| Zea mays PCO091252 mRNA sequence 58 2e-05
11gb|AC096953.4| Homo sapiens BAC clone RP11-272G21 from 4, comple... 42 1.4
12gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, com... 42 1.4
13gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, comp... 40 5.7
14gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll... 40 5.7
15gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cance... 40 5.7
16gb|DP000030.1| Sus scrofa target 116 genomic scaffold 40 5.7
17gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complet... 40 5.7
18gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromo... 40 5.7
19gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, comp... 40 5.7
20gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chrom... 40 5.7
21dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full ... 40 5.7
22gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, co... 40 5.7
23dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full ... 40 5.7 
>emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monodehydroascorbate reductase
          Length = 1250

 Score =  777 bits (392), Expect = 0.0
 Identities = 410/416 (98%)
 Strand = Plus / Minus

                                                                        
Query: 8    aacaatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgt 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 aacaatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgt 1173

                                                                        
Query: 68   acaggtttgtacagggtttcctccaagtaactgtatgtaaacaataaatcttcctccttc 127
            |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1172 acaggtttatacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttc 1113

                                                                        
Query: 128  cttccagcagtttatcccagccgcccgcaaaccgatcccgggtttcaccacctgcggcgc 187
            |||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 1112 cttccatcagtttatcccagccgcccgcgaaccgttccggggtttcaccacctgcggcgc 1053

                                                                        
Query: 188  ttcctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgtt 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 ttcctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgtt 993

                                                                        
Query: 248  gcataccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttc 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  gcataccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttc 933

                                                                        
Query: 308  ttgctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggcc 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ttgctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggcc 873

                                                                    
Query: 368  ttggttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccacc 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  ttggttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccacc 817
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>gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full insert mRNA
            sequence
          Length = 1821

 Score =  359 bits (181), Expect = 5e-96
 Identities = 229/245 (93%)
 Strand = Plus / Minus

                                                                        
Query: 172  tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgacactgccgc 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1583 tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgagacggccgc 1524

                                                                        
Query: 232  aacgacccctgccgttgcataccatacgaaggtgggcttttcgccgagggtaaccccgct 291
            ||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 1523 aacaacccccgccgtcgcgtaccacacgaaggtgggcttctcgccgagggtgaccccgct 1464

                                                                        
Query: 292  gtcaggcacctctttcttgctttcctggatggcaaacgctaggccttgtctttcaagttc 351
            ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1463 gtcaggcacgtctttcttgctttcctggatggcaaatgccaggccttgtctttcaagttc 1404

                                                                        
Query: 352  agacatgtccgaggccttggttttacgccggacaaccaccgacaatgcctcgtagtcgtc 411
            ||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct: 1403 agacatgtccgagaccttggttttacgccagacaaccaccgataacgcctcgtagtcgtc 1344

                 
Query: 412  ccggt 416
            |||||
Sbjct: 1343 ccggt 1339



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 60/69 (86%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                        
Query: 8    aacaatatattatgagatttctatacttgtttacac-atgaggcaacgattacactttcg 66
            |||||||||| |||   ||||||||||||||||||  ||||| |||  ||||||||||||
Sbjct: 1708 aacaatatatgatggtgtttctatacttgtttacagtatgagacaaa-attacactttcg 1650

                     
Query: 67   tacaggttt 75
            |||||||||
Sbjct: 1649 tacaggttt 1641
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>ref|XM_467388.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1822

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 170  tttcaccacctgcggcgcttcctgccgtaccaataacc 207
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1609 tttcaccacctacggcgtttcctgccgtaccaataacc 1572
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>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 170    tttcaccacctgcggcgcttcctgccgtaccaataacc 207
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 113958 tttcaccacctacggcgtttcctgccgtaccaataacc 113921
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 170      tttcaccacctgcggcgcttcctgccgtaccaataacc 207
                ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 29248673 tttcaccacctacggcgtttcctgccgtaccaataacc 29248710
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>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 170   tttcaccacctgcggcgcttcctgccgtaccaataacc 207
             ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 46018 tttcaccacctacggcgtttcctgccgtaccaataacc 46055
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>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 170    tttcaccacctgcggcgcttcctgccgtaccaataacc 207
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 138641 tttcaccacctacggcgtttcctgccgtaccaataacc 138678
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>dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full
            insert sequence
          Length = 1821

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 170  tttcaccacctgcggcgcttcctgccgtaccaataacc 207
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1608 tttcaccacctacggcgtttcctgccgtaccaataacc 1571
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>dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H12, full
            insert sequence
          Length = 1246

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 170  tttcaccacctgcggcgcttcctgccgtaccaataacc 207
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1051 tttcaccacctacggcgtttcctgccgtaccaataacc 1014
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>gb|AY106646.1| Zea mays PCO091252 mRNA sequence
          Length = 1867

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 172  tcaccacctgcggcgcttcctgccgtaccaata 204
            |||||||||||||||||||||||| ||||||||
Sbjct: 1557 tcaccacctgcggcgcttcctgccataccaata 1525
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>gb|AC096953.4| Homo sapiens BAC clone RP11-272G21 from 4, complete sequence
          Length = 184152

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 105    taaacaataaatcttcctccttcct 129
              |||||| ||||||||||||||||||
Sbjct: 129328 taaacagtaaatcttcctccttcct 129352
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>gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, complete sequence
          Length = 194728

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 8     aacaatatattatgagatttctata 32
             ||||||||||| |||||||||||||
Sbjct: 61079 aacaatatattttgagatttctata 61103
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>gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, complete sequence
          Length = 218747

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tcttcctccttccttccagc 135
             ||||||||||||||||||||
Sbjct: 16071 tcttcctccttccttccagc 16090
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>gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll2-02 (envDll2-02),
            envDll2-03 (envDll2-03), envDll2-04 (envDll2-04),
            envDll2-05 (envDll2-05), envDll2-06 (envDll2-06), and
            envDll2-07 (envDll2-07) genes, complete cds
          Length = 26938

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  ctttcttgctttcctggatg 322
            ||||||||||||||||||||
Sbjct: 5860 ctttcttgctttcctggatg 5841
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>gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 210578

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    ttccttccagcagtttatcc 144
              ||||||||||||||||||||
Sbjct: 169088 ttccttccagcagtttatcc 169107
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>gb|DP000030.1| Sus scrofa target 116 genomic scaffold
          Length = 380805

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    aaatcttcctccttccttcc 132
              ||||||||||||||||||||
Sbjct: 332404 aaatcttcctccttccttcc 332385
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>gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complete sequence
          Length = 72719

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     acaatatattatgagatttc 28
             ||||||||||||||||||||
Sbjct: 12817 acaatatattatgagatttc 12836
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>gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromosome unknown, complete
              sequence
          Length = 185966

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ttctatacttgtttacacat 45
              ||||||||||||||||||||
Sbjct: 105485 ttctatacttgtttacacat 105504
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>gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, complete sequence
          Length = 180222

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ttctatacttgtttacacat 45
             ||||||||||||||||||||
Sbjct: 34689 ttctatacttgtttacacat 34708
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>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete
              sequence
          Length = 198653

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     gagatttctatacttgttta 40
              ||||||||||||||||||||
Sbjct: 184406 gagatttctatacttgttta 184425
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>dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full insert sequence
          Length = 3083

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  gcataccatacgaaggtggg 267
            ||||||||||||||||||||
Sbjct: 1557 gcataccatacgaaggtggg 1538
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>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence
          Length = 201229

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tcttcctccttccttccagc 135
             ||||||||||||||||||||
Sbjct: 14017 tcttcctccttccttccagc 13998
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>dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gcataccatacgaaggtggg 267
            ||||||||||||||||||||
Sbjct: 1118 gcataccatacgaaggtggg 1137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,133,711
Number of Sequences: 3902068
Number of extensions: 4133711
Number of successful extensions: 67091
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67045
Number of HSP's gapped (non-prelim): 45
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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