ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G6PD_RHIME (Q9Z3S2) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.... 31 1.2
2META_OCEIH (Q8ET26) Homoserine O-succinyltransferase (EC 2.3.1.4... 30 2.6
3DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vu... 30 2.6
4NOC4_YEAST (Q06512) Nucleolar complex protein 4 (U3 small nucleo... 29 4.4
5OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (... 29 5.8
6NPD_THEMA (Q9WYW0) NAD-dependent deacetylase (EC 3.5.1.-) (Regul... 29 5.8
7ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1... 28 7.6
8ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disint... 28 7.6
9FGFR3_MOUSE (Q61851) Fibroblast growth factor receptor 3 precurs... 28 7.6
10DPO3_LACPL (Q88VK2) DNA polymerase III polC-type (EC 2.7.7.7) (P... 28 9.9
11CD248_HUMAN (Q9HCU0) Endosialin precursor (Tumor endothelial mar... 28 9.9
12Y1615_STRT2 (Q5M323) UPF0348 protein stu1615 28 9.9
13Y1615_STRT1 (Q5LYG0) UPF0348 protein str1615 28 9.9
14SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic inos... 28 9.9

>G6PD_RHIME (Q9Z3S2) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)|
          Length = 491

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = -3

Query: 380 ASEVERVVVRQLGVHRCWGAADAGFHHGRVKEHHPGRLHVPVLFVKVHARLGSWRW---P 210
           AS VE+V VR  G +R  GA+  G   G ++E   G  +    FV + A + +WRW   P
Sbjct: 279 ASNVEQVTVR--GQYRA-GASSGGPVKGYLEELEGGVSNTET-FVAIKAEISNWRWAGVP 334

Query: 209 SCLQCNSRLLPNHSRSLASIQRV 141
             L+   R+    S  + + +++
Sbjct: 335 FYLRTGKRMAGRMSEIVITFKQI 357



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>META_OCEIH (Q8ET26) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine|
           O-transsuccinylase) (HTS)
          Length = 303

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 341 VHRCWGAADAGFHHGRVKEHH 279
           +H CWGA  A +HH  + +HH
Sbjct: 139 LHICWGAQAALYHHYGIDKHH 159



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>DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vulgaris antigen|
           homolog)
          Length = 993

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 306 ETSISSTPTTMHPQLANHDALNLGGFLI 389
           ETS+ ST  ++HP +A  D L LG +L+
Sbjct: 901 ETSVMSTSGSVHPAVAIPDPLQLGNYLL 928



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>NOC4_YEAST (Q06512) Nucleolar complex protein 4 (U3 small nucleolar|
           RNA-associated protein 19) (U3 snoRNA-associated protein
           19)
          Length = 552

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 261 NVEASWMMLLNPPMVETSISSTPTTMHPQLAN--HDALNLGGFLIFSHRMQGRKKEVGVN 434
           N E +W+ LLN  +      S    +H ++    H    L  FL  S+ +Q   K  GV 
Sbjct: 256 NFEKNWLSLLNGQLSLQQYKSILLILHKRIIPHFHTPTKLMDFLTDSYNLQSSNKNAGVV 315

Query: 435 P 437
           P
Sbjct: 316 P 316



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>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia|
            up-regulated 1) (170 kDa glucose-regulated protein)
          Length = 999

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +2

Query: 131  RCRSPSESKPTTLSDSVRAYCYIVGRMATSSYLAARA----PSRIELERGGVLDDAP*PA 298
            + + P+  KP  LS  + A    + R     YL  +A    P     ++ G   + P  A
Sbjct: 875  QAKLPATEKPVLLSKDIEAKMMALDREV--QYLLNKAKFTKPRPRPKDKNGTRTEPPLNA 932

Query: 299  HGGNQHQQHPNNDAPPVGEPRRAQP 373
              G+Q ++      PP G+P  A+P
Sbjct: 933  TAGDQEEKV----IPPAGQPEEAKP 953



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>NPD_THEMA (Q9WYW0) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein|
           SIR2 homolog)
          Length = 246

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 386 QEASEVERVVVRQLG-VHRCWGAADAGFHHGRVKEHHPGRLHVPVLFVKVHARLGSWRWP 210
           +E   +E V+ + +  +H+  G+      HG V+E++  R         V  +L S   P
Sbjct: 87  EEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVP 146

Query: 209 SCLQCNSRLLPN 174
            C  CNS + PN
Sbjct: 147 LCDDCNSLIRPN 158



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>ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein) (NMT)
          Length = 370

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 278 DDAP*PAHGGNQHQQHPNNDAPPVGEPRRAQPRR 379
           D+ P P    NQ +QHPN + P +G   R + RR
Sbjct: 5   DEQPRPRRR-NQDRQHPNQNRPVLGRTERDRNRR 37



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>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 17) (ADAM-TS
            17) (ADAM-TS17)
          Length = 1095

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 75   RRSTLCPSLNKPCPYYAAIQIVC 7
            R  + CP+L+KP PY    Q VC
Sbjct: 1006 RHGSECPALSKPAPYRQCYQEVC 1028



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>FGFR3_MOUSE (Q61851) Fibroblast growth factor receptor 3 precursor (EC 2.7.10.1)|
            (FGFR-3) (Heparin-binding growth factor receptor)
          Length = 801

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
 Frame = +2

Query: 44   LLSDGHKVLRRSLGHHLPFAC-HDISLTLRRCRSPSESKPTTLSDSVRAYCYIVGRMATS 220
            LL +GH++ +       P +C HD+ + +R C     S+  T    V     I+   +T 
Sbjct: 701  LLKEGHRMDK-------PASCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTD 753

Query: 221  SYLAARAPSRIELERGGVLDDAP*PAHGGNQHQQHPNNDAPPVGEPRRAQPR 376
             YL    P   +   GG   D P  +  G+       +D  P G P    PR
Sbjct: 754  EYLDLSVPFE-QYSPGG--QDTPSSSSSGDDSVF--THDLLPPGPPSNGGPR 800



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>DPO3_LACPL (Q88VK2) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1437

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 21  LQHSMDKVY*VTGTRYYADHSDIIYHSHVTTLV*HSADAGHPLNRSQRP 167
           L H M+     TG  +Y +  D IY      ++ HS   G+PLNR++RP
Sbjct: 724 LGHEMNIPVAATGDVHYLNPEDKIYRK----ILIHS-QPGNPLNRTERP 767



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>CD248_HUMAN (Q9HCU0) Endosialin precursor (Tumor endothelial marker 1) (CD248|
           antigen)
          Length = 757

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 210 WPPPAT*PRVHLHE*NWNVEASWMMLLNPPMVETSISSTPTTMHPQL--ANHDALN 371
           WPPP + PRV  H       +S + +  P +V  +  + P+   P +  A H AL+
Sbjct: 429 WPPPLSAPRVPYH-------SSVLSVTRPVVVSATHPTLPSAHQPPVIPATHPALS 477



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>Y1615_STRT2 (Q5M323) UPF0348 protein stu1615|
          Length = 363

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 186 ALTESLKVVGFDSEGDLHLRSVK 118
           +L +S+ V+GF  +G  HL+SVK
Sbjct: 296 SLPKSIHVLGFSQKGQFHLKSVK 318



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>Y1615_STRT1 (Q5LYG0) UPF0348 protein str1615|
          Length = 363

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 186 ALTESLKVVGFDSEGDLHLRSVK 118
           +L +S+ V+GF  +G  HL+SVK
Sbjct: 296 SLPKSIHVLGFSQKGQFHLKSVK 318



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>SYNJ2_MOUSE (Q9D2G5) Synaptojanin-2 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 2)
          Length = 1434

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 194  YIVGRMATSSYLAARAPSRIELER-GGVLDDAP*PAHGGNQHQQHPNNDAPPVGEPRRAQ 370
            Y V ++ T++   A A  R  LE  GGV + AP      NQ    P     P   PRR  
Sbjct: 1116 YNVKQIKTTNAQEAEAAIRCLLEASGGVPESAPGAIPLRNQGSSKPEATLGPPALPRRPA 1175

Query: 371  PR 376
            PR
Sbjct: 1176 PR 1177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,393,659
Number of Sequences: 219361
Number of extensions: 1355551
Number of successful extensions: 3445
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3445
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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