ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472762.1| Oryza sativa (japonica cultivar-group), predic... 220 3e-54
2emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4,... 107 3e-20
3emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 107 3e-20
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
6emb|AL109925.11|HSDJ534K7 Human DNA sequence from clone RP4-534K... 44 0.38
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
8gb|AC092380.4| Homo sapiens chromosome 16 clone RP11-727M7, comp... 44 0.38
9dbj|AK070653.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
10gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
11gb|BC070468.1| Mus musculus programmed cell death protein 11, mR... 42 1.5
12ref|XM_953433.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
13ref|XM_330476.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
14gb|AC091381.3| Papio anubis clone RP41-468N20, complete sequence 42 1.5
15gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosom... 42 1.5
16ref|NM_011053.2| Mus musculus programmed cell death protein 11 (... 42 1.5
17gb|AC079327.3| Homo sapiens chromosome 18, clone RP11-240N5, com... 42 1.5
18dbj|AK141450.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 42 1.5
19dbj|AK147950.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 42 1.5
20gb|AF055668.1|AF055668 Mus musculus apoptosis-linked gene 4, del... 42 1.5
21dbj|AK161803.1| Mus musculus 13 days embryo male testis cDNA, RI... 42 1.5
22gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 42 1.5
23gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 m... 42 1.5
24gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 42 1.5
25gb|AC123966.4| Macaca mulatta clone CH250-72H9, complete sequence 42 1.5
26ref|XM_219966.3| PREDICTED: Rattus norvegicus programmed cell de... 42 1.5
27dbj|AK129080.1| Mus musculus mRNA for mKIAA0185 protein 42 1.5
28gb|AC007632.4|AC007632 Homo sapiens clone R529C19B from chromoso... 42 1.5
29gb|BC010844.1| Mus musculus programmed cell death protein 11, mR... 42 1.5
30gb|AC138437.3| Cercopithecus aethiops clone CH252-390I5, complet... 42 1.5
31emb|AL831793.4| Mouse DNA sequence from clone RP23-9F23 on chrom... 42 1.5
32emb|AL672064.17| Mouse DNA sequence from clone RP23-91G19 on chr... 42 1.5
33emb|AL596306.4| Human DNA sequence from clone RP11-304M3 on chro... 40 5.9
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35dbj|AB211305.1| Telmessus cheiragonus genes for ITS1, 5.8S rRNA,... 40 5.9
36dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
37emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 i... 40 5.9
38gb|AC170869.2| Mus musculus BAC clone RP24-370B22 from chromosom... 40 5.9
39emb|AL663056.11| Mouse DNA sequence from clone RP23-24O15 on chr... 40 5.9 
>ref|XM_472762.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score =  220 bits (111), Expect = 3e-54
 Identities = 174/195 (89%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcacgaatagaactggaacgtggaggcgtcctggatgatgctccttaacccgcccatggt 304
            |||||| |||||||||||||| ||||| |||||||||||||| | || |||||| |||||
Sbjct: 1437 tcacgagtagaactggaacgtcgaggcatcctggatgatgcttcgtagcccgccgatggt 1378

                                                                        
Query: 305  ggaaaccagcatcagcagcaccccaacaacgatgcacccccagttggcgaaccacgacgc 364
            |||| | | ||||| |||||| ||||| |||||||| ||||||||||| |||||||||||
Sbjct: 1377 ggaagcgatcatcaacagcactccaacgacgatgcaaccccagttggcaaaccacgacgc 1318

                                                                        
Query: 365  gctcaacctcggaggcttcttgatcttcagccacaggatgcaggggaggaagaaggaggt 424
            ||| |||||||||||||||||||||||||||||||| || |||||||||||| |||| ||
Sbjct: 1317 gctgaacctcggaggcttcttgatcttcagccacagaatacaggggaggaagtaggacgt 1258

                           
Query: 425  gggcgtgaacccgaa 439
             ||||||||||||||
Sbjct: 1257 cggcgtgaacccgaa 1243
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>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete
             sequence
          Length = 131246

 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                         
Query: 343   cccagttggcgaaccacgacgcgctcaacctcggaggcttcttgatcttcagccacagga 402
             |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 69599 cccagttggcaaaccacgacgcgctgaacctcggaggcttcttgatcttcagccacagaa 69658

                       
Query: 403   tgcaggggag 412
             | ||||||||
Sbjct: 69659 tacaggggag 69668



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                         
Query: 245   tcacgaatagaactggaacgtggaggcgtcctggatgatgctccttaacccgcccatggt 304
             |||||| |||||||||||||| ||||| |||||||||||||| | || |||||| |||||
Sbjct: 69362 tcacgagtagaactggaacgtcgaggcatcctggatgatgcttcgtagcccgccgatggt 69421

                                                 
Query: 305   ggaaaccagcatcagcagcaccccaacaacgatgca 340
             |||| | | ||||| |||||| ||||| ||||||||
Sbjct: 69422 ggaagcgatcatcaacagcactccaacgacgatgca 69457
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
              complete sequence
          Length = 176383

 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                          
Query: 343    cccagttggcgaaccacgacgcgctcaacctcggaggcttcttgatcttcagccacagga 402
              |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 167686 cccagttggcaaaccacgacgcgctgaacctcggaggcttcttgatcttcagccacagaa 167745

                        
Query: 403    tgcaggggag 412
              | ||||||||
Sbjct: 167746 tacaggggag 167755



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                          
Query: 245    tcacgaatagaactggaacgtggaggcgtcctggatgatgctccttaacccgcccatggt 304
              |||||| |||||||||||||| ||||| |||||||||||||| | || |||||| |||||
Sbjct: 167449 tcacgagtagaactggaacgtcgaggcatcctggatgatgcttcgtagcccgccgatggt 167508

                                                  
Query: 305    ggaaaccagcatcagcagcaccccaacaacgatgca 340
              |||| | | ||||| |||||| ||||| ||||||||
Sbjct: 167509 ggaagcgatcatcaacagcactccaacgacgatgca 167544
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  107 bits (54), Expect = 3e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                            
Query: 343      cccagttggcgaaccacgacgcgctcaacctcggaggcttcttgatcttcagccacagga 402
                |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 23073269 cccagttggcaaaccacgacgcgctgaacctcggaggcttcttgatcttcagccacagaa 23073328

                          
Query: 403      tgcaggggag 412
                | ||||||||
Sbjct: 23073329 tacaggggag 23073338



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Plus

                                                                            
Query: 245      tcacgaatagaactggaacgtggaggcgtcctggatgatgctccttaacccgcccatggt 304
                |||||| |||||||||||||| ||||| |||||||||||||| | || |||||| |||||
Sbjct: 23073032 tcacgagtagaactggaacgtcgaggcatcctggatgatgcttcgtagcccgccgatggt 23073091

                                                    
Query: 305      ggaaaccagcatcagcagcaccccaacaacgatgca 340
                |||| | | ||||| |||||| ||||| ||||||||
Sbjct: 23073092 ggaagcgatcatcaacagcactccaacgacgatgca 23073127
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>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11,
              complete sequence
          Length = 124104

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 305    ggaaaccagcatcagcagcacc 326
              ||||||||||||||||||||||
Sbjct: 104479 ggaaaccagcatcagcagcacc 104500
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>emb|AL109925.11|HSDJ534K7 Human DNA sequence from clone RP4-534K7 on chromosome 1p31.2-32.3
             Contains the 3' end of gene KIAA1799, the gene for a novel
             protein similar to deleted in lymphocytic leukemia 2
             (DLEU2), the 5' end of a variant of the ITGB3BP gene for
             integrin beta 3 binding protein (beta3-endonexin) and the
             PGM1 gene for phosphoglucomutase 1, complete sequence
          Length = 152583

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 405   caggggaggaagaaggaggtgg 426
             ||||||||||||||||||||||
Sbjct: 15410 caggggaggaagaaggaggtgg 15389
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 305     ggaaaccagcatcagcagcacc 326
               ||||||||||||||||||||||
Sbjct: 1442817 ggaaaccagcatcagcagcacc 1442838
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>gb|AC092380.4| Homo sapiens chromosome 16 clone RP11-727M7, complete sequence
          Length = 167071

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 369   aacctcggaggcttcttgatcttcag 394
             |||||||||||||||||||| |||||
Sbjct: 82731 aacctcggaggcttcttgattttcag 82706
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>dbj|AK070653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055D14, full
            insert sequence
          Length = 3691

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 305  ggaaaccagcatcagcagcacc 326
            ||||||||||||||||||||||
Sbjct: 3455 ggaaaccagcatcagcagcacc 3434
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>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
             complete sequence
          Length = 144455

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 305   ggaaaccagcatcagcagcacc 326
             ||||||||||||||||||||||
Sbjct: 36897 ggaaaccagcatcagcagcacc 36918
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>gb|BC070468.1| Mus musculus programmed cell death protein 11, mRNA (cDNA clone
            MGC:99418 IMAGE:30628812), complete cds
          Length = 6059

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2076 ggcaggatggccacctccagc 2056
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>ref|XM_953433.1| Neurospora crassa OR74A hypothetical protein (NCU09827.1) partial
            mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 406  aggggaggaagaaggaggtgg 426
            |||||||||||||||||||||
Sbjct: 1064 aggggaggaagaaggaggtgg 1084
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>ref|XM_330476.1| Neurospora crassa OR74A hypothetical protein (NCU09827.1) partial
            mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 406  aggggaggaagaaggaggtgg 426
            |||||||||||||||||||||
Sbjct: 1064 aggggaggaagaaggaggtgg 1084
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>gb|AC091381.3| Papio anubis clone RP41-468N20, complete sequence
          Length = 156353

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 406   aggggaggaagaaggaggtgg 426
             |||||||||||||||||||||
Sbjct: 99395 aggggaggaagaaggaggtgg 99415
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>gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosome 19, complete
             sequence
          Length = 179952

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   ggcaggatggccacctccagc 223
             |||||||||||||||||||||
Sbjct: 57068 ggcaggatggccacctccagc 57088
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>ref|NM_011053.2| Mus musculus programmed cell death protein 11 (Pdcd11), mRNA
          Length = 6062

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2089 ggcaggatggccacctccagc 2069
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>gb|AC079327.3| Homo sapiens chromosome 18, clone RP11-240N5, complete sequence
          Length = 165642

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 399   aggatgcaggggaggaagaaggagg 423
             |||| ||||||||||||||||||||
Sbjct: 73146 aggaagcaggggaggaagaaggagg 73122
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>dbj|AK141450.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530023G07 product:programmed
            cell death protein 11, full insert sequence
          Length = 4434

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2090 ggcaggatggccacctccagc 2070
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>dbj|AK147950.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270112P13 product:programmed cell death protein
            11, full insert sequence
          Length = 4345

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2074 ggcaggatggccacctccagc 2054
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>gb|AF055668.1|AF055668 Mus musculus apoptosis-linked gene 4, deltaC form (Alg-4) mRNA,
           partial cds
          Length = 2305

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 203 ggcaggatggccacctccagc 223
           |||||||||||||||||||||
Sbjct: 792 ggcaggatggccacctccagc 772
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>dbj|AK161803.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030443I12 product:programmed
            cell death protein 11, full insert sequence
          Length = 3152

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2079 ggcaggatggccacctccagc 2059
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 406     aggggaggaagaaggaggtgg 426
               |||||||||||||||||||||
Sbjct: 1365159 aggggaggaagaaggaggtgg 1365179
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>gb|AC090657.40| Mus musculus strain C57BL/6J clone rp23-410i12 map 18, complete sequence
          Length = 186929

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    ggcaggatggccacctccagc 223
              |||||||||||||||||||||
Sbjct: 178424 ggcaggatggccacctccagc 178444
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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 406     aggggaggaagaaggaggtgg 426
               |||||||||||||||||||||
Sbjct: 1388088 aggggaggaagaaggaggtgg 1388108
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>gb|AC123966.4| Macaca mulatta clone CH250-72H9, complete sequence
          Length = 114602

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 406   aggggaggaagaaggaggtgg 426
             |||||||||||||||||||||
Sbjct: 39875 aggggaggaagaaggaggtgg 39895
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>ref|XM_219966.3| PREDICTED: Rattus norvegicus programmed cell death protein 11
            (predicted) (Pdcd11_predicted), mRNA
          Length = 5921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2138 ggcaggatggccacctccagc 2118
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>dbj|AK129080.1| Mus musculus mRNA for mKIAA0185 protein
          Length = 6040

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2087 ggcaggatggccacctccagc 2067
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>gb|AC007632.4|AC007632 Homo sapiens clone R529C19B from chromosome 18, complete sequence
          Length = 205959

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 399    aggatgcaggggaggaagaaggagg 423
              |||| ||||||||||||||||||||
Sbjct: 182890 aggaagcaggggaggaagaaggagg 182914
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>gb|BC010844.1| Mus musculus programmed cell death protein 11, mRNA (cDNA clone
            IMAGE:3490875)
          Length = 6042

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 203  ggcaggatggccacctccagc 223
            |||||||||||||||||||||
Sbjct: 2069 ggcaggatggccacctccagc 2049
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>gb|AC138437.3| Cercopithecus aethiops clone CH252-390I5, complete sequence
          Length = 182169

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 406   aggggaggaagaaggaggtgg 426
             |||||||||||||||||||||
Sbjct: 84189 aggggaggaagaaggaggtgg 84209
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>emb|AL831793.4| Mouse DNA sequence from clone RP23-9F23 on chromosome 4, complete
              sequence
          Length = 236470

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 399    aggatgcaggggaggaagaaggagg 423
              ||||||||| |||||||||||||||
Sbjct: 152340 aggatgcagaggaggaagaaggagg 152316
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>emb|AL672064.17| Mouse DNA sequence from clone RP23-91G19 on chromosome X, complete
             sequence
          Length = 152177

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 408   gggaggaagaaggaggtgggc 428
             |||||||||||||||||||||
Sbjct: 50828 gggaggaagaaggaggtgggc 50848
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>emb|AL596306.4| Human DNA sequence from clone RP11-304M3 on chromosome 13 Contains the
             3' end of the COG6 gene for component of oligomeric golgi
             complex 6 (KIAA1134, COD2) and a novel protein similar to
             RIKEN cDNA A430101B06 gene (MGC1307) pseudogene, complete
             sequence
          Length = 69027

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 410   gaggaagaaggaggtgggcgtgaa 433
             |||||||||||||| |||||||||
Sbjct: 42588 gaggaagaaggaggagggcgtgaa 42565
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 369      aacctcggaggcttcttgatcttc 392
                ||||||||||||||||| ||||||
Sbjct: 13075120 aacctcggaggcttcttcatcttc 13075143
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>dbj|AB211305.1| Telmessus cheiragonus genes for ITS1, 5.8S rRNA, ITS2
          Length = 1184

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 ggggaggaagaaggaggtgg 426
           ||||||||||||||||||||
Sbjct: 284 ggggaggaagaaggaggtgg 265
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0531C01
          Length = 158574

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    aacctcggaggcttcttgatcttc 392
              ||||||||||||||||| ||||||
Sbjct: 113921 aacctcggaggcttcttcatcttc 113944
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>emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 in linkage group 1,
             complete sequence
          Length = 165892

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gaatagaactggaacgtgga 268
             ||||||||||||||||||||
Sbjct: 59805 gaatagaactggaacgtgga 59786
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>gb|AC170869.2| Mus musculus BAC clone RP24-370B22 from chromosome 3, complete sequence
          Length = 143247

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tacattgtaggcaggatggc 213
             ||||||||||||||||||||
Sbjct: 99166 tacattgtaggcaggatggc 99147
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>emb|AL663056.11| Mouse DNA sequence from clone RP23-24O15 on chromosome X, complete
              sequence
          Length = 197729

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 399    aggatgcaggggaggaagaaggag 422
              ||||||||| ||||||||||||||
Sbjct: 155957 aggatgcagaggaggaagaaggag 155980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,022,606
Number of Sequences: 3902068
Number of extensions: 3022606
Number of successful extensions: 63750
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63584
Number of HSP's gapped (non-prelim): 166
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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