ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
2gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 72 2e-09
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AK058684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
5emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 46 0.11
6emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; se... 44 0.44
7gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Canc... 44 0.44
8gb|AC153574.4| Mus musculus 6 BAC RP23-265B8 (Roswell Park Cance... 44 0.44
9gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome 44 0.44
10gb|AC108430.11| Mus musculus chromosome 14, clone RP23-166L19, c... 42 1.8
11gb|AC004692.2| Homo sapiens PAC clone RP5-1107K12 from 7, comple... 42 1.8
12emb|AL935185.11| Zebrafish DNA sequence from clone CH211-250A16 ... 42 1.8
13ref|XM_343034.2| PREDICTED: Rattus norvegicus UBX domain contain... 42 1.8
14emb|CT025537.7| Mouse DNA sequence from clone RP23-454O17 on chr... 42 1.8
15gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, comp... 42 1.8
16emb|AL669834.10| Mouse DNA sequence from clone RP23-114O4 on chr... 42 1.8
17ref|NM_130830.2| Homo sapiens leucine rich repeat containing 15 ... 40 6.9
18gb|AC166169.2| Mus musculus BAC clone RP23-193F7 from chromosome... 40 6.9
19gb|AC145405.3| Gorilla gorilla gorilla clone CH255-421A19, compl... 40 6.9
20gb|AC183799.2| Pan troglodytes BAC clone CH251-329J7 from chromo... 40 6.9
21gb|AC107681.15| Mus musculus chromosome 12, clone RP23-380M24, c... 40 6.9
22gb|AC102062.9| Mus musculus chromosome 19, clone RP23-217B9, com... 40 6.9
23gb|AC136453.3| Mus musculus chromosome 19 clone RP24-327L21, com... 40 6.9
24emb|CR627487.6| Zebrafish DNA sequence from clone DKEY-181K11 in... 40 6.9
25gb|AC107759.18| Mus musculus chromosome 5, clone RP23-193N17, co... 40 6.9
26gb|AC073841.9| Homo sapiens BAC clone RP11-483G21 from 7, comple... 40 6.9
27gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosom... 40 6.9
28emb|AL450307.18| Human DNA sequence from clone RP11-245K15 on ch... 40 6.9
29gb|BC101064.1| Homo sapiens leucine rich repeat containing 15, m... 40 6.9
30emb|AL669838.22| Mouse DNA sequence from clone RP23-324A4 on chr... 40 6.9
31gb|AC161165.5| Mus musculus chromosome 15, clone RP23-278C10, co... 40 6.9
32emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chro... 40 6.9
33emb|AL645644.8| Mouse DNA sequence from clone RP23-400O5 on chro... 40 6.9
34gb|AC125362.6| Homo sapiens 3 BAC RP11-279P10 (Roswell Park Canc... 40 6.9
35emb|AL928625.5| Mouse DNA sequence from clone RP24-528P17 on chr... 40 6.9
36gb|AC158355.2| Mus musculus BAC clone RP24-374N16 from chromosom... 40 6.9
37gb|AC090137.4| Homo sapiens chromosome 8, clone RP11-56A10, comp... 40 6.9
38gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, comple... 40 6.9
39gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 6.9
40gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complet... 40 6.9
41tpg|BK001325.1| TPA: TPA_exp: Homo sapiens LRRC15 (LRRC15) mRNA,... 40 6.9
42emb|BX539343.9| Zebrafish DNA sequence from clone DKEY-58K6 in l... 40 6.9
43gb|AC079148.9| Homo sapiens BAC clone RP11-111J6 from 2, complet... 40 6.9
44gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 6.9
45gb|AC134903.4| Mus musculus BAC clone RP23-329A21 from chromosom... 40 6.9
46emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2... 40 6.9
47dbj|AB072091.1| Hepatitis C virus type 1b gene for polyprotein, ... 40 6.9
48dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.9
49dbj|AP000783.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.9
50gb|AC166781.7| Mus musculus chromosome 8, clone RP24-158M8, comp... 40 6.9
51gb|AC125532.3| Mus musculus BAC clone RP23-447C2 from 10, comple... 40 6.9
52emb|BX855587.13| Zebrafish DNA sequence from clone DKEY-103L5 in... 40 6.9
53gb|AC140672.5| Mus musculus BAC clone RP24-208P4 from chromosome... 40 6.9
54gb|AC153971.3| Mus musculus 10 BAC RP24-254O21 (Roswell Park Can... 40 6.9
55gb|AC165954.3| Mus musculus BAC clone RP23-450F5 from chromosome... 40 6.9
56gb|J05206.1|RATPAI1AA Rat plasminogen activator inhibitor-1 40 6.9

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 445     acctcgtaggcatccttctgcctcagctttttcacgccggcgatgaagcacaccttatcg 504
               ||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||| || 
Sbjct: 5740498 acctcataagcatccttctgcctcagcttcttcacgccggctatgaagcagatcttgtca 5740439

                       
Query: 505     gacctgaa 512
               ||||||||
Sbjct: 5740438 gacctgaa 5740431



to top

>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 445   acctcgtaggcatccttctgcctcagctttttcacgccggcgatgaagcacaccttatcg 504
             ||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||| || 
Sbjct: 90673 acctcataagcatccttctgcctcagcttcttcacgccggctatgaagcagatcttgtca 90732

                     
Query: 505   gacctgaa 512
             ||||||||
Sbjct: 90733 gacctgaa 90740



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 445     acctcgtaggcatccttctgcctcagctttttcacgccggcgatgaagcacaccttatcg 504
               ||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||| || 
Sbjct: 5739711 acctcataagcatccttctgcctcagcttcttcacgccggctatgaagcagatcttgtca 5739652

                       
Query: 505     gacctgaa 512
               ||||||||
Sbjct: 5739651 gacctgaa 5739644



to top

>dbj|AK058684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A07, full
           insert sequence
          Length = 463

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 445 acctcgtaggcatccttctgcctcagctttttcacgccggcgatgaagcacaccttatcg 504
           ||||| || |||||||||||||||||||| ||||||||||| |||||||| | ||| || 
Sbjct: 274 acctcataagcatccttctgcctcagcttcttcacgccggctatgaagcagatcttgtca 215

                   
Query: 505 gacctgaa 512
           ||||||||
Sbjct: 214 gacctgaa 207



to top

>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 470     gctttttcacgccggcgatgaag 492
               |||||||||||||||||||||||
Sbjct: 1414446 gctttttcacgccggcgatgaag 1414468



to top

>emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; segment 3/3
          Length = 302938

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 50     ttatgatgtccatggcaattttcttg 75
              |||||||||| |||||||||||||||
Sbjct: 200810 ttatgatgtctatggcaattttcttg 200785



to top

>gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 205189

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 450  gtaggcatccttctgcctcagc 471
            ||||||||||||||||||||||
Sbjct: 7956 gtaggcatccttctgcctcagc 7935



to top

>gb|AC153574.4| Mus musculus 6 BAC RP23-265B8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 176152

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 450   gtaggcatccttctgcctcagc 471
             ||||||||||||||||||||||
Sbjct: 71472 gtaggcatccttctgcctcagc 71493



to top

>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome
          Length = 927303

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 50     ttatgatgtccatggcaattttcttg 75
              |||||||||| |||||||||||||||
Sbjct: 825137 ttatgatgtctatggcaattttcttg 825112



to top

>gb|AC108430.11| Mus musculus chromosome 14, clone RP23-166L19, complete sequence
          Length = 204251

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   aatgcaaagccacaacacatg 174
             |||||||||||||||||||||
Sbjct: 64372 aatgcaaagccacaacacatg 64352



to top

>gb|AC004692.2| Homo sapiens PAC clone RP5-1107K12 from 7, complete sequence
          Length = 126579

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 456   atccttctgcctcagcttttt 476
             |||||||||||||||||||||
Sbjct: 50951 atccttctgcctcagcttttt 50971



to top

>emb|AL935185.11| Zebrafish DNA sequence from clone CH211-250A16 in linkage group 21,
              complete sequence
          Length = 191281

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 288    acaccaatccaatcaccagca 308
              |||||||||||||||||||||
Sbjct: 155866 acaccaatccaatcaccagca 155846



to top

>ref|XM_343034.2| PREDICTED: Rattus norvegicus UBX domain containing 4 (predicted)
            (Ubxd4_predicted), mRNA
          Length = 2413

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  atccttctgcctcagcttttt 476
            |||||||||||||||||||||
Sbjct: 1494 atccttctgcctcagcttttt 1474



to top

>emb|CT025537.7| Mouse DNA sequence from clone RP23-454O17 on chromosome 14, complete
             sequence
          Length = 192695

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   aatgcaaagccacaacacatg 174
             |||||||||||||||||||||
Sbjct: 48194 aatgcaaagccacaacacatg 48174



to top

>gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, complete sequence
          Length = 211079

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 175    ctaaatgttcacattactggg 195
              |||||||||||||||||||||
Sbjct: 171404 ctaaatgttcacattactggg 171384



to top

>emb|AL669834.10| Mouse DNA sequence from clone RP23-114O4 on chromosome 4, complete
             sequence
          Length = 147248

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   atccttctgcctcagcttttt 476
             |||||||||||||||||||||
Sbjct: 83448 atccttctgcctcagcttttt 83428



to top

>ref|NM_130830.2| Homo sapiens leucine rich repeat containing 15 (LRRC15), mRNA
          Length = 5938

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  ccattcctttgcatctagat 32
           ||||||||||||||||||||
Sbjct: 108 ccattcctttgcatctagat 127



to top

>gb|AC166169.2| Mus musculus BAC clone RP23-193F7 from chromosome 14, complete sequence
          Length = 235897

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     caaaattatgatgtccatgg 64
              ||||||||||||||||||||
Sbjct: 138017 caaaattatgatgtccatgg 138036



to top

>gb|AC145405.3| Gorilla gorilla gorilla clone CH255-421A19, complete sequence
          Length = 179099

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 456    atccttctgcctcagctttt 475
              ||||||||||||||||||||
Sbjct: 104275 atccttctgcctcagctttt 104294



to top

>gb|AC183799.2| Pan troglodytes BAC clone CH251-329J7 from chromosome 7, complete
             sequence
          Length = 174044

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 452   aggcatccttctgcctcagc 471
             ||||||||||||||||||||
Sbjct: 98041 aggcatccttctgcctcagc 98060



to top

>gb|AC107681.15| Mus musculus chromosome 12, clone RP23-380M24, complete sequence
          Length = 186496

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    atccttctgcctcagctttt 475
              ||||||||||||||||||||
Sbjct: 144084 atccttctgcctcagctttt 144065



to top

>gb|AC102062.9| Mus musculus chromosome 19, clone RP23-217B9, complete sequence
          Length = 253774

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ctccattcctttgcatctag 30
             ||||||||||||||||||||
Sbjct: 38291 ctccattcctttgcatctag 38310



to top

>gb|AC136453.3| Mus musculus chromosome 19 clone RP24-327L21, complete sequence
          Length = 201474

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ctccattcctttgcatctag 30
              ||||||||||||||||||||
Sbjct: 151827 ctccattcctttgcatctag 151846



to top

>emb|CR627487.6| Zebrafish DNA sequence from clone DKEY-181K11 in linkage group 17,
             complete sequence
          Length = 104588

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   atgagatcatgaaaagatgg 395
             ||||||||||||||||||||
Sbjct: 94203 atgagatcatgaaaagatgg 94184



to top

>gb|AC107759.18| Mus musculus chromosome 5, clone RP23-193N17, complete sequence
          Length = 262970

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   atcagagaacatgcaaggga 234
             ||||||||||||||||||||
Sbjct: 92197 atcagagaacatgcaaggga 92178



to top

>gb|AC073841.9| Homo sapiens BAC clone RP11-483G21 from 7, complete sequence
          Length = 55588

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   aggcatccttctgcctcagc 471
             ||||||||||||||||||||
Sbjct: 12727 aggcatccttctgcctcagc 12708



to top

>gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosome 13, complete
             sequence
          Length = 205783

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gcatccttctgcctcagctt 473
             ||||||||||||||||||||
Sbjct: 84499 gcatccttctgcctcagctt 84480



to top

>emb|AL450307.18| Human DNA sequence from clone RP11-245K15 on chromosome 10, complete
              sequence
          Length = 159020

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    ccacacaccacatgggacta 340
              ||||||||||||||||||||
Sbjct: 147301 ccacacaccacatgggacta 147282



to top

>gb|BC101064.1| Homo sapiens leucine rich repeat containing 15, mRNA (cDNA clone
           MGC:119586 IMAGE:40008605), complete cds
          Length = 3248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  ccattcctttgcatctagat 32
           ||||||||||||||||||||
Sbjct: 96  ccattcctttgcatctagat 115



to top

>emb|AL669838.22| Mouse DNA sequence from clone RP23-324A4 on chromosome 11 Contains
            the Adcy1 gene for adenylate cyclase 1, a novel gene and
            a CpG island, complete sequence
          Length = 189132

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   ttcctttgcatctagatatt 35
            ||||||||||||||||||||
Sbjct: 7595 ttcctttgcatctagatatt 7576



to top

>gb|AC161165.5| Mus musculus chromosome 15, clone RP23-278C10, complete sequence
          Length = 176135

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    catccttctgcctcagcttt 474
              ||||||||||||||||||||
Sbjct: 130025 catccttctgcctcagcttt 130006



to top

>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a
              general transcription factor II A, 1 (Gtf2a1) pseudogene,
              the 3' end of the Pkd1l1 gene for polycystic kidney disease
              1 like 1 and a heterogeneous nuclear ribonucleoprotein A3
              (Hnrpa3) pseudogene, complete sequence
          Length = 235198

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    acattactgggacaccacccatgc 208
              |||||| |||||||||||||||||
Sbjct: 121232 acattagtgggacaccacccatgc 121255



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    acattactgggacaccacccatgc 208
              |||||| |||||||||||||||||
Sbjct: 120812 acattagtgggacaccacccatgc 120835



to top

>emb|AL645644.8| Mouse DNA sequence from clone RP23-400O5 on chromosome 11 Contains the
             3' end of the gene for a novel protein (A530001H01), the
             5' end of the Myh10 gene for non-muscle myosin heavy chain
             10 and a CpG island, complete sequence
          Length = 195322

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   atccttctgcctcagctttt 475
             ||||||||||||||||||||
Sbjct: 48782 atccttctgcctcagctttt 48763



to top

>gb|AC125362.6| Homo sapiens 3 BAC RP11-279P10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 91987

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    ccattcctttgcatctagat 32
             ||||||||||||||||||||
Sbjct: 27610 ccattcctttgcatctagat 27591



to top

>emb|AL928625.5| Mouse DNA sequence from clone RP24-528P17 on chromosome 4, complete
             sequence
          Length = 170639

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   catccttctgcctcagcttt 474
             ||||||||||||||||||||
Sbjct: 88752 catccttctgcctcagcttt 88733



to top

>gb|AC158355.2| Mus musculus BAC clone RP24-374N16 from chromosome 9, complete sequence
          Length = 172612

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   atccttctgcctcagctttt 475
             ||||||||||||||||||||
Sbjct: 84003 atccttctgcctcagctttt 83984



to top

>gb|AC090137.4| Homo sapiens chromosome 8, clone RP11-56A10, complete sequence
          Length = 169989

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    cttctgcctcagctttttca 478
              ||||||||||||||||||||
Sbjct: 130906 cttctgcctcagctttttca 130925



to top

>gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, complete sequence
          Length = 132768

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    atgcaataccatacagcact 129
              ||||||||||||||||||||
Sbjct: 112605 atgcaataccatacagcact 112586



to top

>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gcatccttctgcctcagctt 473
             ||||||||||||||||||||
Sbjct: 81313 gcatccttctgcctcagctt 81294



to top

>gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complete sequence
          Length = 108511

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    atgcaataccatacagcact 129
              ||||||||||||||||||||
Sbjct: 102523 atgcaataccatacagcact 102542



to top

>tpg|BK001325.1| TPA: TPA_exp: Homo sapiens LRRC15 (LRRC15) mRNA, complete cds
          Length = 5938

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  ccattcctttgcatctagat 32
           ||||||||||||||||||||
Sbjct: 108 ccattcctttgcatctagat 127



to top

>emb|BX539343.9| Zebrafish DNA sequence from clone DKEY-58K6 in linkage group 17, complete
              sequence
          Length = 191248

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    atgagatcatgaaaagatgg 395
              ||||||||||||||||||||
Sbjct: 175726 atgagatcatgaaaagatgg 175745



to top

>gb|AC079148.9| Homo sapiens BAC clone RP11-111J6 from 2, complete sequence
          Length = 176690

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   catccttctgcctcagcttt 474
             ||||||||||||||||||||
Sbjct: 19319 catccttctgcctcagcttt 19300



to top

>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 456     atccttctgcctcagctttt 475
               ||||||||||||||||||||
Sbjct: 1220858 atccttctgcctcagctttt 1220877



to top

>gb|AC134903.4| Mus musculus BAC clone RP23-329A21 from chromosome 5, complete sequence
          Length = 198368

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   catccttctgcctcagcttt 474
             ||||||||||||||||||||
Sbjct: 42111 catccttctgcctcagcttt 42092



to top

>emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2525P14 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 209242

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   aggcatccttctgcctcagc 471
             ||||||||||||||||||||
Sbjct: 48846 aggcatccttctgcctcagc 48827



to top

>dbj|AB072091.1| Hepatitis C virus type 1b gene for polyprotein, NS3 region, partial
           cds, isolate:53
          Length = 540

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 439 cggggcacctcgtaggcatc 458
           ||||||||||||||||||||
Sbjct: 440 cggggcacctcgtaggcatc 459



to top

>dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109E10, complete
              sequence
          Length = 169313

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    aggcatccttctgcctcagc 471
              ||||||||||||||||||||
Sbjct: 122018 aggcatccttctgcctcagc 121999



to top

>dbj|AP000783.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-12D18, complete
            sequence
          Length = 114233

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 452  aggcatccttctgcctcagc 471
            ||||||||||||||||||||
Sbjct: 4774 aggcatccttctgcctcagc 4755



to top

>gb|AC166781.7| Mus musculus chromosome 8, clone RP24-158M8, complete sequence
          Length = 163096

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 455   catccttctgcctcagctttttca 478
             ||||||||||||||||||| ||||
Sbjct: 23839 catccttctgcctcagcttcttca 23816



to top

>gb|AC125532.3| Mus musculus BAC clone RP23-447C2 from 10, complete sequence
          Length = 182582

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 455    catccttctgcctcagcttt 474
              ||||||||||||||||||||
Sbjct: 121194 catccttctgcctcagcttt 121213



to top

>emb|BX855587.13| Zebrafish DNA sequence from clone DKEY-103L5 in linkage group 7,
             complete sequence
          Length = 131836

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aattatgatgtccatggcaa 67
             ||||||||||||||||||||
Sbjct: 31197 aattatgatgtccatggcaa 31216



to top

>gb|AC140672.5| Mus musculus BAC clone RP24-208P4 from chromosome 8, complete sequence
          Length = 212819

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 455    catccttctgcctcagctttttca 478
              ||||||||||||||||||| ||||
Sbjct: 127060 catccttctgcctcagcttcttca 127083



to top

>gb|AC153971.3| Mus musculus 10 BAC RP24-254O21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 159743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    catccttctgcctcagcttt 474
              ||||||||||||||||||||
Sbjct: 143631 catccttctgcctcagcttt 143612



to top

>gb|AC165954.3| Mus musculus BAC clone RP23-450F5 from chromosome 12, complete sequence
          Length = 184826

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   atccttctgcctcagctttt 475
             ||||||||||||||||||||
Sbjct: 64116 atccttctgcctcagctttt 64097



to top

>gb|J05206.1|RATPAI1AA Rat plasminogen activator inhibitor-1
          Length = 14302

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gcatccttctgcctcagctt 473
             ||||||||||||||||||||
Sbjct: 10307 gcatccttctgcctcagctt 10288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,788,987
Number of Sequences: 3902068
Number of extensions: 4788987
Number of successful extensions: 108303
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108110
Number of HSP's gapped (non-prelim): 193
length of query: 512
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 489
effective length of database: 17,143,297,704
effective search space: 8383072577256
effective search space used: 8383072577256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top