>APCE_CYACA (Q9TLS6) Phycobilisome linker polypeptide (Anchor polypeptide)|
           (PBS-anchor protein)
          Length = 870

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 67  DFVTKHHLGRAPKLQPPPCLLNQNMA 144
           +F TKH LGRAPK Q      NQ +A
Sbjct: 777 EFCTKHFLGRAPKNQSEIRYYNQVLA 802

>RNZ_PSEPK (Q88FQ4) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 319

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 142 PCFGLISRGVVVIWEPGPDGVL*RSQDFCNGLPCKLKRKVLACGSND 2
           P +G +++G+ V +    DG L    D+    P +  R+V+ CG ND
Sbjct: 171 PLWGELAKGLTVTY----DGQLLNGNDYLR--PSRPPRRVIVCGDND 211

>POLG_SVDVU (P13900) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A) (P2-3B); Core protein P2B (P2-5B); Core protein P2C
           (P2-X); C
          Length = 2184

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  LRHKTPSGPGSQITTTPLLIKPKH 140
           +RH    GPG  ++T  +  KPKH
Sbjct: 787 MRHVNDGGPGPIVSTVRIYFKPKH 810

>POLG_SVDVH (P16604) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A) (P2-3B); Core protein P2B (P2-5B); Core protein P2C
           (P2-X); C
          Length = 2184

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  LRHKTPSGPGSQITTTPLLIKPKH 140
           +RH    GPG  ++T  +  KPKH
Sbjct: 787 MRHVNDGGPGPIVSTVRIYFKPKH 810


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,652,967
Number of Sequences: 219361
Number of extensions: 390469
Number of successful extensions: 1107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)