ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart42a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC148465.2| Xenopus tropicalis clone CH216-65A19, complete se... 40 1.8
2emb|AL139819.8| Human DNA sequence from clone RP11-34D15 on chro... 40 1.8
3emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 1.8
4gb|AC163901.2| Mus musculus BAC clone RP23-269N21 from chromosom... 40 1.8
5gb|AC093415.2| Homo sapiens chromosome 3 clone RP11-586N22, comp... 40 1.8
6gb|AC160053.2| Mus musculus BAC clone RP23-339M18 from chromosom... 40 1.8
7gb|AC154261.2| Mus musculus BAC clone RP24-303N7 from chromosome... 40 1.8
8gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Can... 40 1.8
9gb|AF251319.1|AF251319 Macaca mulatta CD8 alpha gene, intron 5 40 1.8
10emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 i... 40 1.8
11gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 1.8
12dbj|AP006194.1| Homo sapiens genomic DNA, chromosome 3, clone:RP... 40 1.8
13gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, comple... 40 1.8
14gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, com... 40 1.8
15gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome... 40 1.8
16gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, comp... 40 1.8
17dbj|AP000495.1| Homo sapiens genomic DNA, chromosome 3p21.3, clo... 40 1.8
18gb|AC131995.14| Mus musculus chromosome 1, clone RP24-338G10, co... 38 7.0
19gb|AC005221.1| Homo sapiens chromosome 5, P1 clone 1108H7 (LBNL ... 38 7.0
20gb|AC145894.3| Pan troglodytes BAC clone RP43-8D18 from 7, compl... 38 7.0
21ref|XM_452719.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C11627g ... 38 7.0
22gb|AY915098.1| Schistosoma japonicum SJCHGC02985 protein mRNA, c... 38 7.0
23gb|AC163690.4| Mus musculus BAC clone RP23-470F9 from chromosome... 38 7.0
24emb|CR352287.12| Zebrafish DNA sequence from clone DKEY-158P1 in... 38 7.0
25gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, comp... 38 7.0
26gb|AC132269.3| Mus musculus BAC clone RP24-409M22 from chromosom... 38 7.0
27gb|AC129220.3| Mus musculus BAC clone RP24-475J22 from chromosom... 38 7.0
28gb|AC110602.8| Homo sapiens chromosome 17, clone RP11-67D12, com... 38 7.0
29gb|AC079005.9| Homo sapiens chromosome 17, clone RP11-153K8, com... 38 7.0
30gb|AC146110.2| Pan troglodytes BAC clone RP43-22L15 from 7, comp... 38 7.0
31gb|U53341.2| Caenorhabditis elegans cosmid F49E10, complete sequ... 38 7.0
32gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete s... 38 7.0
33gb|AC074327.6| Homo sapiens chromosome 10 clone RP11-556E13, com... 38 7.0
34emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 38 7.0
35emb|AL109853.4|HSJ765F13 Human DNA sequence from clone RP4-765F1... 38 7.0
36emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 7.0
37emb|AJ132009.2|LLA132009 Lactococcus lactis subsp. cremoris plas... 38 7.0
38gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, compl... 38 7.0
39gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome 38 7.0
40ref|NM_076585.2| Caenorhabditis elegans F49E10.2b (F49E10.2) mRN... 38 7.0
41ref|NM_076586.2| Caenorhabditis elegans F49E10.2a (F49E10.2) mRN... 38 7.0
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
43gb|AF097472.2|AF097472 Lactococcus lactis subsp. cremoris plasmi... 38 7.0
44gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome... 38 7.0
45gb|AC007736.3| Homo sapiens BAC clone RP11-15J24 from 2, complet... 38 7.0
46gb|AC078974.4| Homo sapiens BAC clone RP11-60H5 from 2, complete... 38 7.0
47gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map ... 38 7.0
48dbj|AB194895.1| Rattus norvegicus pTB4G gene for thymosin beta4,... 38 7.0
49dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
50gb|AC000370.1|HSAC000370 Human cosmid g1980a084, complete sequence 38 7.0
51gb|AC122205.6| Mus musculus BAC clone RP23-76C13 from chromosome... 38 7.0
52emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-8... 38 7.0
53emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 ... 38 7.0
54gb|AF013595.1|AF013595 Lactococcus lactis plasmid pIL103 replica... 38 7.0
55emb|AL929586.19| Zebrafish DNA sequence from clone CH211-188I17,... 38 7.0
56gb|AC002995.1|AC002995 Human Cosmid g5129z159 from 7q31.3, compl... 38 7.0
57dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone... 38 7.0
58gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, co... 38 7.0
59emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-2... 38 7.0
60emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chr... 38 7.0 
>gb|AC148465.2| Xenopus tropicalis clone CH216-65A19, complete sequence
          Length = 167567

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    ttattaaaccaaaacatggcacca 147
              |||||||||||||||||| |||||
Sbjct: 139644 ttattaaaccaaaacatgccacca 139667
to top
>emb|AL139819.8| Human DNA sequence from clone RP11-34D15 on chromosome 10 Contains the
             5' end of gene FLJ30135, the PKD2L1 gene for polycystic
             kidney disease 2-like 1, the SCD gene for stearoyl-CoA
             desaturase (delta-9-desturase), two novel genes and two
             CpG islands, complete sequence
          Length = 115278

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    attacaaaaatcctgacttc 72
             ||||||||||||||||||||
Sbjct: 59689 attacaaaaatcctgacttc 59670
to top
>emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 4/20
          Length = 294050

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gcttattaaaccaaaacatg 141
              ||||||||||||||||||||
Sbjct: 259851 gcttattaaaccaaaacatg 259832
to top
>gb|AC163901.2| Mus musculus BAC clone RP23-269N21 from chromosome 17, complete
            sequence
          Length = 202092

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   aacttttctttttaacttac 42
            ||||||||||||||||||||
Sbjct: 1097 aacttttctttttaacttac 1078
to top
>gb|AC093415.2| Homo sapiens chromosome 3 clone RP11-586N22, complete sequence
          Length = 196641

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tgctaaaacttttcttttta 36
              ||||||||||||||||||||
Sbjct: 153017 tgctaaaacttttcttttta 153036
to top
>gb|AC160053.2| Mus musculus BAC clone RP23-339M18 from chromosome 9, complete sequence
          Length = 188000

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    aaattacaaccacccccctg 122
              ||||||||||||||||||||
Sbjct: 178496 aaattacaaccacccccctg 178515
to top
>gb|AC154261.2| Mus musculus BAC clone RP24-303N7 from chromosome 9, complete sequence
          Length = 172079

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aaattacaaccacccccctg 122
             ||||||||||||||||||||
Sbjct: 62462 aaattacaaccacccccctg 62481
to top
>gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 203530

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aaacttttctttttaactta 41
              ||||||||||||||||||||
Sbjct: 116763 aaacttttctttttaactta 116744
to top
>gb|AF251319.1|AF251319 Macaca mulatta CD8 alpha gene, intron 5
          Length = 365

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  atgctaaaacttttcttttt 35
           ||||||||||||||||||||
Sbjct: 236 atgctaaaacttttcttttt 217
to top
>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
             complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    aaaacttttctttttaactt 40
             ||||||||||||||||||||
Sbjct: 88966 aaaacttttctttttaactt 88985
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     gcttattaaaccaaaacatg 141
               ||||||||||||||||||||
Sbjct: 1962226 gcttattaaaccaaaacatg 1962245
to top
>dbj|AP006194.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-81G2, complete
             sequence
          Length = 147925

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tgctaaaacttttcttttta 36
             ||||||||||||||||||||
Sbjct: 43938 tgctaaaacttttcttttta 43919
to top
>gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, complete sequence
          Length = 163269

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     aaaacttttctttttaacttacat 44
              |||| |||||||||||||||||||
Sbjct: 114082 aaaatttttctttttaacttacat 114059
to top
>gb|AC114581.8| Mus musculus chromosome 8, clone RP23-170M20, complete sequence
          Length = 197312

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     catcattgctaccacatgct 20
             ||||||||||||||||||||
Sbjct: 21878 catcattgctaccacatgct 21859
to top
>gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome 17, complete sequence
          Length = 151012

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     aacttttctttttaacttac 42
              ||||||||||||||||||||
Sbjct: 131898 aacttttctttttaacttac 131879
to top
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence
          Length = 159765

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      catcattgctaccacatgct 20
              ||||||||||||||||||||
Sbjct: 127516 catcattgctaccacatgct 127497
to top
>dbj|AP000495.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308,
             anti-oncogene region, section 3/5
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tgctaaaacttttcttttta 36
             ||||||||||||||||||||
Sbjct: 25297 tgctaaaacttttcttttta 25278
to top
>gb|AC131995.14| Mus musculus chromosome 1, clone RP24-338G10, complete sequence
          Length = 153731

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    ttacaaaaatcctgacttc 72
             |||||||||||||||||||
Sbjct: 53402 ttacaaaaatcctgacttc 53384
to top
>gb|AC005221.1| Homo sapiens chromosome 5, P1 clone 1108H7 (LBNL H81), complete
             sequence
          Length = 84838

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    ctaaaacttttctttttaa 37
             |||||||||||||||||||
Sbjct: 68932 ctaaaacttttctttttaa 68914
to top
>gb|AC145894.3| Pan troglodytes BAC clone RP43-8D18 from 7, complete sequence
          Length = 199372

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 15     catgctaaaacttttctttttaa 37
              |||||||||| ||||||||||||
Sbjct: 137871 catgctaaaatttttctttttaa 137893
to top
>ref|XM_452719.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C11627g predicted mRNA
          Length = 2277

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  ttctttttaacttacatgg 46
           |||||||||||||||||||
Sbjct: 937 ttctttttaacttacatgg 955
to top
>gb|AY915098.1| Schistosoma japonicum SJCHGC02985 protein mRNA, complete cds
          Length = 657

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 129 aaaccaaaacatggcacca 147
           |||||||||||||||||||
Sbjct: 34  aaaccaaaacatggcacca 52
to top
>gb|AC163690.4| Mus musculus BAC clone RP23-470F9 from chromosome 1, complete sequence
          Length = 210131

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     ttacaaaaatcctgacttc 72
              |||||||||||||||||||
Sbjct: 151278 ttacaaaaatcctgacttc 151260
to top
>emb|CR352287.12| Zebrafish DNA sequence from clone DKEY-158P1 in linkage group 24,
              complete sequence
          Length = 153729

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     ttttctttttaacttacat 44
              |||||||||||||||||||
Sbjct: 123933 ttttctttttaacttacat 123915
to top
>gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, complete sequence
          Length = 283052

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     ttttctttttaacttacat 44
              |||||||||||||||||||
Sbjct: 184987 ttttctttttaacttacat 184969
to top
>gb|AC132269.3| Mus musculus BAC clone RP24-409M22 from chromosome 12, complete sequence
          Length = 172018

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     aaaacttttctttttaact 39
              |||||||||||||||||||
Sbjct: 128857 aaaacttttctttttaact 128875
to top
>gb|AC129220.3| Mus musculus BAC clone RP24-475J22 from chromosome 5, complete sequence
          Length = 140359

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ttttctttttaacttacat 44
             |||||||||||||||||||
Sbjct: 83654 ttttctttttaacttacat 83636
to top
>gb|AC110602.8| Homo sapiens chromosome 17, clone RP11-67D12, complete sequence
          Length = 160854

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    tgctaaaacttttcttttt 35
             |||||||||||||||||||
Sbjct: 10093 tgctaaaacttttcttttt 10111
to top
>gb|AC079005.9| Homo sapiens chromosome 17, clone RP11-153K8, complete sequence
          Length = 168811

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     tgctaaaacttttcttttt 35
              |||||||||||||||||||
Sbjct: 154527 tgctaaaacttttcttttt 154545
to top
>gb|AC146110.2| Pan troglodytes BAC clone RP43-22L15 from 7, complete sequence
          Length = 185754

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 15     catgctaaaacttttctttttaa 37
              |||||||||| ||||||||||||
Sbjct: 149292 catgctaaaatttttctttttaa 149314
to top
>gb|U53341.2| Caenorhabditis elegans cosmid F49E10, complete sequence
          Length = 42909

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     catcattgctaccacatgc 19
             |||||||||||||||||||
Sbjct: 32744 catcattgctaccacatgc 32726
to top
>gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete sequence
          Length = 114945

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     tcccaaattacaaccaccc 117
              |||||||||||||||||||
Sbjct: 112469 tcccaaattacaaccaccc 112451
to top
>gb|AC074327.6| Homo sapiens chromosome 10 clone RP11-556E13, complete sequence
          Length = 189250

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    cacatgctaaaacttttct 31
             |||||||||||||||||||
Sbjct: 67805 cacatgctaaaacttttct 67787
to top
>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 23    aacttttctttttaacttacatg 45
             ||||||| |||||||||||||||
Sbjct: 22704 aacttttttttttaacttacatg 22726
to top
>emb|AL109853.4|HSJ765F13 Human DNA sequence from clone RP4-765F13 on chromosome Xq25-26.2
             Contains two seven transmembrane helix receptor
             pseudogenes and the gene for a novel protein similar to
             part of hepatoma-derived growth factor (high-mobility
             group protein 1-like) (HDGF), complete sequence
          Length = 106465

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    taaaacttttctttttaac 38
             |||||||||||||||||||
Sbjct: 23332 taaaacttttctttttaac 23314
to top
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 28      ttctttttaacttacatgg 46
               |||||||||||||||||||
Sbjct: 1004318 ttctttttaacttacatgg 1004300
to top
>emb|AJ132009.2|LLA132009 Lactococcus lactis subsp. cremoris plasmid pAW601 repB gene
          Length = 4752

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   gctaaaacttttcttttta 36
            |||||||||||||||||||
Sbjct: 3855 gctaaaacttttcttttta 3873



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   gctaaaacttttcttttta 36
            |||||||||||||||||||
Sbjct: 2764 gctaaaacttttcttttta 2782



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   gctaaaacttttcttttta 36
            |||||||||||||||||||
Sbjct: 1749 gctaaaacttttcttttta 1767
to top
>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence
          Length = 182564

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     ctaaaacttttctttttaa 37
              |||||||||||||||||||
Sbjct: 169864 ctaaaacttttctttttaa 169882
to top
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome
          Length = 1471282

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     cacatgctaaaacttttct 31
              |||||||||||||||||||
Sbjct: 704252 cacatgctaaaacttttct 704234
to top
>ref|NM_076585.2| Caenorhabditis elegans F49E10.2b (F49E10.2) mRNA, complete cds
          Length = 2852

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catcattgctaccacatgc 19
           |||||||||||||||||||
Sbjct: 799 catcattgctaccacatgc 781
to top
>ref|NM_076586.2| Caenorhabditis elegans F49E10.2a (F49E10.2) mRNA, complete cds
          Length = 2424

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catcattgctaccacatgc 19
           |||||||||||||||||||
Sbjct: 850 catcattgctaccacatgc 832
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 21      aaaacttttctttttaact 39
               |||||||||||||||||||
Sbjct: 5643629 aaaacttttctttttaact 5643611
to top
>gb|AF097472.2|AF097472 Lactococcus lactis subsp. cremoris plasmid pAW122 replication protein
            RepB (repB) and type IC HsdS subunit (hsdS) genes,
            complete cds
          Length = 5835

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 18   gctaaaacttttctttttaactt 40
            |||||||||||||||||| ||||
Sbjct: 5171 gctaaaacttttcttttttactt 5193



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   gctaaaacttttcttttta 36
            |||||||||||||||||||
Sbjct: 4461 gctaaaacttttcttttta 4479



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   gctaaaacttttcttttta 36
            |||||||||||||||||||
Sbjct: 3888 gctaaaacttttcttttta 3906



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  gctaaaacttttcttttta 36
           |||||||||||||||||||
Sbjct: 366 gctaaaacttttcttttta 384



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  gctaaaacttttcttttta 36
           |||||||||||||||||||
Sbjct: 117 gctaaaacttttcttttta 135
to top
>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence
          Length = 203909

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 14     acatgctaaaacttttcttttta 36
              |||||||||||||| ||||||||
Sbjct: 155417 acatgctaaaacttatcttttta 155395
to top
>gb|AC007736.3| Homo sapiens BAC clone RP11-15J24 from 2, complete sequence
          Length = 172476

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    aaacttttctttttaactt 40
             |||||||||||||||||||
Sbjct: 47566 aaacttttctttttaactt 47548
to top
>gb|AC078974.4| Homo sapiens BAC clone RP11-60H5 from 2, complete sequence
          Length = 28184

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   cttttctttttaacttaca 43
            |||||||||||||||||||
Sbjct: 5496 cttttctttttaacttaca 5514
to top
>gb|AC092754.4| Homo sapiens chromosome 15 clone RP11-112N19 map 15q22, complete
             sequence
          Length = 173411

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    aaacttttctttttaactt 40
             |||||||||||||||||||
Sbjct: 69335 aaacttttctttttaactt 69317
to top
>dbj|AB194895.1| Rattus norvegicus pTB4G gene for thymosin beta4, promoter region
          Length = 1626

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  atgctaaaacttttctttt 34
           |||||||||||||||||||
Sbjct: 962 atgctaaaacttttctttt 980
to top
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    aaaacttttctttttaact 39
             |||||||||||||||||||
Sbjct: 71365 aaaacttttctttttaact 71347
to top
>gb|AC000370.1|HSAC000370 Human cosmid g1980a084, complete sequence
          Length = 44498

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    catgctaaaacttttctttttaa 37
             |||||||||| ||||||||||||
Sbjct: 28520 catgctaaaatttttctttttaa 28498
to top
>gb|AC122205.6| Mus musculus BAC clone RP23-76C13 from chromosome 8, complete sequence
          Length = 249808

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     aacttttctttttaactta 41
              |||||||||||||||||||
Sbjct: 179050 aacttttctttttaactta 179032
to top
>emb|AL161670.4|CNS01RHD Human chromosome 14 DNA sequence BAC R-804M7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163923

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     ttttctttttaacttacat 44
              |||||||||||||||||||
Sbjct: 129956 ttttctttttaacttacat 129938
to top
>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1,
              complete sequence
          Length = 211668

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      tgctaccacatgctaaaac 25
              |||||||||||||||||||
Sbjct: 187038 tgctaccacatgctaaaac 187020
to top
>gb|AF013595.1|AF013595 Lactococcus lactis plasmid pIL103 replication protein (repB) and HsdS
            subunit (hsdS) genes, complete cds
          Length = 3743

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   gctaaaacttttcttttta 36
            |||||||||||||||||||
Sbjct: 3018 gctaaaacttttcttttta 3036
to top
>emb|AL929586.19| Zebrafish DNA sequence from clone CH211-188I17, complete sequence
          Length = 154808

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    aacttttctttttaactta 41
             |||||||||||||||||||
Sbjct: 31370 aacttttctttttaactta 31388
to top
>gb|AC002995.1|AC002995 Human Cosmid g5129z159 from 7q31.3, complete sequence
          Length = 44668

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    catgctaaaacttttctttttaa 37
             |||||||||| ||||||||||||
Sbjct: 28996 catgctaaaatttttctttttaa 28974
to top
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    cttttctttttaacttaca 43
             |||||||||||||||||||
Sbjct: 70617 cttttctttttaacttaca 70635
to top
>gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, complete sequence
          Length = 232469

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     ctaaaacttttctttttaa 37
              |||||||||||||||||||
Sbjct: 142521 ctaaaacttttctttttaa 142539
to top
>emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-244E17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157827

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     ctaaaacttttctttttaa 37
              |||||||||||||||||||
Sbjct: 109660 ctaaaacttttctttttaa 109678
to top
>emb|AL591204.14| Mouse DNA sequence from clone RP23-28C17 on chromosome 11, complete
              sequence
          Length = 148846

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 129    aaaccaaaacatggcacca 147
              |||||||||||||||||||
Sbjct: 109800 aaaccaaaacatggcacca 109782


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,184,040
Number of Sequences: 3902068
Number of extensions: 2184040
Number of successful extensions: 148826
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148594
Number of HSP's gapped (non-prelim): 232
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top