ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrin... 45 3e-05
2SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg prot... 35 0.035
3YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulator... 30 1.5
4TIP11_ORYSA (P50156) Probable aquaporin TIP1.1 (Tonoplast intrin... 29 2.5
5ISPD_BACHK (Q6HPT2) 2-C-methyl-D-erythritol 4-phosphate cytidyly... 29 2.5
6ISPD_BACC1 (Q73FC1) 2-C-methyl-D-erythritol 4-phosphate cytidyly... 29 2.5
7ISPD_BACAN (Q81VV5) 2-C-methyl-D-erythritol 4-phosphate cytidyly... 29 2.5
8ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor... 29 3.3
9YP66_CAEEL (Q09215) Hypothetical protein B0495.6 28 4.3
10ZNF80_MACMU (P51505) Zinc finger protein 80 28 5.6
11ZNF80_PONPY (P51507) Zinc finger protein 80 28 5.6
12ZNF80_PANTR (P51506) Zinc finger protein 80 28 5.6
13ZNF80_GORGO (P51503) Zinc finger protein 80 28 5.6
14TIP21_ARATH (Q41951) Aquaporin TIP2.1 (Tonoplast intrinsic prote... 28 5.6
15TIP1_MEDTR (Q9FY14) Probable aquaporin TIP-type (MtAQP1) 28 5.6
16TIP1_MEDSA (P42067) Probable aquaporin TIP-type (Membrane channe... 28 5.6
17TIP12_ARATH (Q41963) Aquaporin TIP1.2 (Tonoplast intrinsic prote... 27 9.5
18GNT1A_KLULA (Q9Y761) Glucose N-acetyltransferase 1-A (EC 2.4.1.-... 27 9.5
19ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation m... 27 9.5
20ISPD_BACCR (Q81J63) 2-C-methyl-D-erythritol 4-phosphate cytidyly... 27 9.5
21AZUR_PSEFC (P00285) Azurin 27 9.5

>TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein|
           2.2) (OsTIP2.2)
          Length = 248

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = -3

Query: 346 GGLAGIVYRYLYMCDNHTPVASNDY 272
           GGLAG+VYRY+YMC +H PVAS+++
Sbjct: 224 GGLAGLVYRYVYMCGDHAPVASSEF 248



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>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)|
          Length = 877

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
 Frame = +1

Query: 22  IESHKETQLKNSQTPTTSQH-HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSR----- 183
           +ES  +T   N + P + Q+ +  L    +++SK  N   ++SEPN     TSS      
Sbjct: 583 VESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALR 642

Query: 184 --HSDHHARTFLCCRRHHGNQTPNDPSH 261
                HHA T       +GNQ  +  +H
Sbjct: 643 KVRFQHHANTNTNSSATNGNQDTSQTTH 670



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>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in|
           FKH1-STH1 intergenic region
          Length = 964

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 43  QLKNSQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRHS 189
           QLK+S    +  ++++ QI +  +SK    T L S P+N + F  + +S
Sbjct: 640 QLKDSSMAASRTYNLLNQIFEKLNSKTIQLTALHSSPSNESAFLVTNNS 688



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>TIP11_ORYSA (P50156) Probable aquaporin TIP1.1 (Tonoplast intrinsic protein|
           1.1) (OsTIP1.1) (rTIP1)
          Length = 250

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 346 GGLAGIVYRYLYMCDNHTPVASNDY 272
           GGLAG++Y  L++   H  + + DY
Sbjct: 226 GGLAGVIYEVLFISHTHEQLPTTDY 250



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>ISPD_BACHK (Q6HPT2) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 226

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 4   LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126
           +  GV++E+ + +QLK  QTP      ++L+  + A   C+
Sbjct: 140 VEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180



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>ISPD_BACC1 (Q73FC1) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 226

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 4   LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126
           +  GV++E+ + +QLK  QTP      ++L+  + A   C+
Sbjct: 140 VEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180



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>ISPD_BACAN (Q81VV5) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 226

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 4   LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126
           +  GV++E+ + +QLK  QTP      ++L+  + A   C+
Sbjct: 140 VEQGVVVETVERSQLKAVQTPQGFSVSLLLEAHRSAKQSCF 180



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>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)|
           (MALA-2)
          Length = 537

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 55  SQTPTTSQHHIILQIEKHASSKCYNFTGLRSEPNN-MTFFTSSRHSDHHARTFLC 216
           SQ   +    + ++ E H+ SK    +G+   P      FT +  S+ H R+F C
Sbjct: 320 SQLEVSEGSQVTVKCEAHSGSKVVLLSGVEPRPPTPQVQFTLNASSEDHKRSFFC 374



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>YP66_CAEEL (Q09215) Hypothetical protein B0495.6|
          Length = 87

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +1

Query: 82  HIILQIEKHASSKCYNFTGLRSEPNNMTFFTSSRH------SDHHARTFLCC--RRHHGN 237
           H++ Q+E H  SK Y  T +R EP+ M   ++ RH      S  +   +  C  R    N
Sbjct: 9   HVLAQLE-HLQSK-YTGTAMRHEPSRMDCESAPRHSRLSNVSSRNEHVYCRCGEREPSSN 66

Query: 238 QTPNDPSH 261
              +D SH
Sbjct: 67  PLQSDKSH 74



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>ZNF80_MACMU (P51505) Zinc finger protein 80|
          Length = 293

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 246 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 293



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>ZNF80_PONPY (P51507) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>ZNF80_PANTR (P51506) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>ZNF80_GORGO (P51503) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 325 YRYLYMCDNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 182
           + Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 226 FYYSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>TIP21_ARATH (Q41951) Aquaporin TIP2.1 (Tonoplast intrinsic protein 2.1)|
           (Delta-tonoplast intrinsic protein) (Delta-TIP)
          Length = 250

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 346 GGLAGIVYRYLYM-CDNHTPVASNDY 272
           GGLAG++Y  ++M    H P+AS D+
Sbjct: 225 GGLAGLIYGNVFMGSSEHVPLASADF 250



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>TIP1_MEDTR (Q9FY14) Probable aquaporin TIP-type (MtAQP1)|
          Length = 250

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 346 GGLAGIVYRYLYMCDNHTPVASNDY 272
           GG+AG+VY  L++   H  + + DY
Sbjct: 226 GGIAGLVYEVLFINSTHEQLPTTDY 250



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>TIP1_MEDSA (P42067) Probable aquaporin TIP-type (Membrane channel protein 1)|
           (MsMCP1)
          Length = 249

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 346 GGLAGIVYRYLYMCDNHTPVASNDY 272
           GG+AG+VY  L++   H  + + DY
Sbjct: 225 GGIAGLVYEVLFINSTHEQLPTTDY 249



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>TIP12_ARATH (Q41963) Aquaporin TIP1.2 (Tonoplast intrinsic protein 1.2)|
           (Gamma-tonoplast intrinsic protein 2) (Gamma-TIP2) (Salt
           stress-induced tonoplast intrinsic protein)
          Length = 253

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 346 GGLAGIVYRYLYMCDN-HTPVASNDY 272
           GGLAGI+Y ++++ +N H  + + DY
Sbjct: 228 GGLAGIIYDFVFIDENAHEQLPTTDY 253



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>GNT1A_KLULA (Q9Y761) Glucose N-acetyltransferase 1-A (EC 2.4.1.-)|
           (N-acetylglucosaminyltransferase A)
          Length = 460

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 19  LIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCYNF 132
           LIE +K+  L N+QT   ++   ILQ +   S   YNF
Sbjct: 235 LIEDNKQIALANNQTAELTEIEDILQQKIDDSEDIYNF 272



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>ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation mediating|
           surface antigen)
          Length = 612

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 37  ETQLKNSQTPTTSQ----HHIILQIEKHASSKCYNFTGLRSEPNNMTFFTSS 180
           +TQ  +S + TT+     HH   Q  +    +   +  ++ +PNNM FF ++
Sbjct: 95  QTQQPSSSSATTNNVVPPHHYNQQQSQQQQQQQQQYQQMQPQPNNMQFFDNT 146



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>ISPD_BACCR (Q81J63) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 226

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 4   LNSGVLIESHKETQLKNSQTPTTSQHHIILQIEKHASSKCY 126
           +  GV++E+ + +QL   QTP      ++L+  + A   C+
Sbjct: 140 VEQGVVVETVERSQLNAVQTPQGFSVSLLLEAHRSAKQSCF 180



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>AZUR_PSEFC (P00285) Azurin|
          Length = 128

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 154 NNMTFFTSSRHSDHHARTFLCCRRHHGNQTPNDPSHGWL 270
           + M+F T +   D   +TF    +H GN   N   H W+
Sbjct: 11  DQMSFDTKAIEIDKSCKTFTVDLKHSGNLPKNVMGHNWV 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.127    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,648,642
Number of Sequences: 219361
Number of extensions: 866265
Number of successful extensions: 1901
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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