>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent|
           helicase brm) (Protein brahma)
          Length = 1638

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 515 APQQHGPITGQAPAAVLGPIMKHHPGMVG--MYGGAPMGHPVAGHMVP 378
           AP  H P   Q P  + GP    HPG  G  M  G P   P   HM P
Sbjct: 28  APSPHSPYPHQQPGPLQGPPPPGHPGAYGHPMQHGPPGQGPPGHHMPP 75

>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 497 PITGQAPAAVLGPIMKHHPGMVGMYGGAPMGHPVAGHMVP 378
           P  G +P A+LGP     PG      G   G P AGH +P
Sbjct: 18  PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57

>TBR1_MOUSE (Q64336) T-brain-1 protein (T-box brain protein 1) (TBR-1) (TES-56)|
          Length = 681

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
 Frame = -3

Query: 512 PQQHGPITGQAPAAVLGPIMKHHPGMV-GMYGG-----APMGHPVAGHMVPAAVG 366
           P QHGP             M HHP +  G Y       +P G+P AG+  P   G
Sbjct: 127 PSQHGPAHPAFSIGSPSRYMAHHPVITNGAYNSLLSNSSPQGYPTAGYPYPQQYG 181

>TBR1_HUMAN (Q16650) T-brain-1 protein (T-box brain protein 1) (TBR-1) (TES-56)|
          Length = 682

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
 Frame = -3

Query: 512 PQQHGPITGQAPAAVLGPIMKHHPGMV-GMYGG-----APMGHPVAGHMVPAAVG 366
           P QHGP             M HHP +  G Y       +P G+P AG+  P   G
Sbjct: 127 PGQHGPAHPAFSIGSPSRYMAHHPVITNGAYNSLLSNSSPQGYPTAGYPYPQQYG 181

>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase-like 1)
          Length = 752

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +3

Query: 297 RSRVADGHGVGRVARPGREHDRRADGGG------DHVAGDRVAHGRSPVHAHHP 440
           RSR+A G  +      G+  DRRA GGG         A   +AH  +P+ A  P
Sbjct: 556 RSRLARGSTIRSTFHGGQVRDRRAGGGGGGGVQNGPPASPTLAHEAAPLPAGRP 609

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = -3

Query: 521  QAAPQQHGPITGQAPAAVLGPIMKH----HPGMVGMYG-GAPMGH 402
            Q AP   GP   + PA   GP  K     HPG VG  G   P GH
Sbjct: 1041 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGH 1085

>HNF3G_MOUSE (P35584) Hepatocyte nuclear factor 3-gamma (HNF-3G) (Forkhead box|
           protein A3)
          Length = 353

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -3

Query: 521 QAAPQQHGPITGQAPAAVLGPIMKHHPGMVGMYGGAPMGHPVAG 390
           QA+P   GP+   AP A LGP      G  G  GG+  G+   G
Sbjct: 56  QASPLPTGPLAPPAPTAPLGPTFP-SLGTGGSTGGSASGYVAPG 98

>VPAP_PRVKA (P36702) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (UL42 homolog)
          Length = 384

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 414 RSPVHAHHPGMMLHD 458
           R P HAHHP  ++HD
Sbjct: 13  RHPTHAHHPAQVIHD 27

>STF1_MACEU (Q95L87) Steroidogenic factor 1 (STF-1) (SF-1)|
          Length = 463

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -3

Query: 515 APQQHGPITGQAPAAVLGPIMKHHPGMVGMYG---GAPMGHPVAGHMVPAAVG 366
           AP  H    G APA   GP   +  G  G  G     P   P+AG++ PA  G
Sbjct: 137 APALHPGAKGLAPAPPAGPPGDYERGPYGPPGVPMAVPTHGPLAGYLYPAFPG 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,247,738
Number of Sequences: 219361
Number of extensions: 1037751
Number of successful extensions: 2952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2934
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)