Clone Name | rbart41h09 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_193688.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 921 Score = 121 bits (61), Expect = 3e-24 Identities = 102/116 (87%), Gaps = 6/116 (5%) Strand = Plus / Minus Query: 301 gccgggtagccgacgggcatggcgtagggcgggtggcccggcccgggcgggaacatgacc 360 ||||||||||||||||||| | |||| |||| |||||||||| ||||||| ||| Sbjct: 896 gccgggtagccgacgggcacgacgtacggcgcgtggcccggc------gggaacaccacc 843 Query: 361 ggcgtgccgacggcggcggggaccatgtggccggcgaccgggtggcccatgggcgc 416 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 842 ggcgtgccgacggcggcgggcaccatgtggccggcgacggggtggcccatgggcgc 787
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 121 bits (61), Expect = 3e-24 Identities = 102/116 (87%), Gaps = 6/116 (5%) Strand = Plus / Minus Query: 301 gccgggtagccgacgggcatggcgtagggcgggtggcccggcccgggcgggaacatgacc 360 ||||||||||||||||||| | |||| |||| |||||||||| ||||||| ||| Sbjct: 139974 gccgggtagccgacgggcacgacgtacggcgcgtggcccggc------gggaacaccacc 139921 Query: 361 ggcgtgccgacggcggcggggaccatgtggccggcgaccgggtggcccatgggcgc 416 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 139920 ggcgtgccgacggcggcgggcaccatgtggccggcgacggggtggcccatgggcgc 139865
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 121 bits (61), Expect = 3e-24 Identities = 102/116 (87%), Gaps = 6/116 (5%) Strand = Plus / Minus Query: 301 gccgggtagccgacgggcatggcgtagggcgggtggcccggcccgggcgggaacatgacc 360 ||||||||||||||||||| | |||| |||| |||||||||| ||||||| ||| Sbjct: 18752528 gccgggtagccgacgggcacgacgtacggcgcgtggcccggc------gggaacaccacc 18752475 Query: 361 ggcgtgccgacggcggcggggaccatgtggccggcgaccgggtggcccatgggcgc 416 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 18752474 ggcgtgccgacggcggcgggcaccatgtggccggcgacggggtggcccatgggcgc 18752419
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1249E06 Length = 126534 Score = 121 bits (61), Expect = 3e-24 Identities = 102/116 (87%), Gaps = 6/116 (5%) Strand = Plus / Minus Query: 301 gccgggtagccgacgggcatggcgtagggcgggtggcccggcccgggcgggaacatgacc 360 ||||||||||||||||||| | |||| |||| |||||||||| ||||||| ||| Sbjct: 74045 gccgggtagccgacgggcacgacgtacggcgcgtggcccggc------gggaacaccacc 73992 Query: 361 ggcgtgccgacggcggcggggaccatgtggccggcgaccgggtggcccatgggcgc 416 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 73991 ggcgtgccgacggcggcgggcaccatgtggccggcgacggggtggcccatgggcgc 73936
>dbj|AK068565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154G12, full insert sequence Length = 1329 Score = 121 bits (61), Expect = 3e-24 Identities = 102/116 (87%), Gaps = 6/116 (5%) Strand = Plus / Minus Query: 301 gccgggtagccgacgggcatggcgtagggcgggtggcccggcccgggcgggaacatgacc 360 ||||||||||||||||||| | |||| |||| |||||||||| ||||||| ||| Sbjct: 930 gccgggtagccgacgggcacgacgtacggcgcgtggcccggc------gggaacaccacc 877 Query: 361 ggcgtgccgacggcggcggggaccatgtggccggcgaccgggtggcccatgggcgc 416 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 876 ggcgtgccgacggcggcgggcaccatgtggccggcgacggggtggcccatgggcgc 821
>gb|AY151042.1| Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds Length = 1330 Score = 121 bits (61), Expect = 3e-24 Identities = 102/116 (87%), Gaps = 6/116 (5%) Strand = Plus / Minus Query: 301 gccgggtagccgacgggcatggcgtagggcgggtggcccggcccgggcgggaacatgacc 360 ||||||||||||||||||| | |||| |||| |||||||||| ||||||| ||| Sbjct: 915 gccgggtagccgacgggcacgacgtacggcgcgtggcccggc------gggaacaccacc 862 Query: 361 ggcgtgccgacggcggcggggaccatgtggccggcgaccgggtggcccatgggcgc 416 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 861 ggcgtgccgacggcggcgggcaccatgtggccggcgacggggtggcccatgggcgc 806
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 346 ggcgggaacatgaccggcgtgccgacggcggcggggaccatgtggccggcgaccgggtgg 405 ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||| Sbjct: 16212647 ggcgggaacatcaccggcgtgccgacggcggcgagcaccatgtggccggcgacggggtgg 16212706 Query: 406 cccatgggcgctcccccgtacatg 429 ||||||||| | || ||||||||| Sbjct: 16212707 cccatgggcacgccaccgtacatg 16212730 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 480 ggcctggccggtgatggggccgtgctgc 507 ||||||||||||||| ||||| |||||| Sbjct: 16212795 ggcctggccggtgatcgggccctgctgc 16212822
>emb|AL606729.3|OSJN00107 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06, complete sequence Length = 187154 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Plus Query: 346 ggcgggaacatgaccggcgtgccgacggcggcggggaccatgtggccggcgaccgggtgg 405 ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||| Sbjct: 57562 ggcgggaacatcaccggcgtgccgacggcggcgagcaccatgtggccggcgacggggtgg 57621 Query: 406 cccatgggcgctcccccgtacatg 429 ||||||||| | || ||||||||| Sbjct: 57622 cccatgggcacgccaccgtacatg 57645 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 480 ggcctggccggtgatggggccgtgctgc 507 ||||||||||||||| ||||| |||||| Sbjct: 57710 ggcctggccggtgatcgggccctgctgc 57737
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 507 ctgcggcgcggcctgcgcggcg 528 |||||||||||||||||||||| Sbjct: 836377 ctgcggcgcggcctgcgcggcg 836356
>ref|XM_424268.1| PREDICTED: Gallus gallus similar to dopamine- and cAMP-regulated neuronal phosphoprotein DARPP-32 - bovine (LOC426639), mRNA Length = 1014 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 tcgggcccagcacggcggcgg 478 ||||||||||||||||||||| Sbjct: 146 tcgggcccagcacggcggcgg 126
>ref|XM_426290.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 4933431N12 (LOC428732), partial mRNA Length = 792 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 ggcggcgggggcctggccggt 491 ||||||||||||||||||||| Sbjct: 109 ggcggcgggggcctggccggt 129
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 cggcgttgttgatgctggtga 544 ||||||||||||||||||||| Sbjct: 2818179 cggcgttgttgatgctggtga 2818159 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 ggcctgcgcggcgttgttgat 536 ||||||||||||||||||||| Sbjct: 89351 ggcctgcgcggcgttgttgat 89371
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 cggcgcggcctgcgcggcgtt 530 ||||||||||||||||||||| Sbjct: 2843237 cggcgcggcctgcgcggcgtt 2843257
>gb|AY648960.2| Rubrivivax gelatinosus strain 1 superoxide dismutase (sodA) gene, partial cds; hypothetical protein (orf158), CtpA (ctpA), CcoS (ccoS), Cbb3-type cytochrome oxidase subunit 1 (ccoN), Cbb3-type cytochrome oxidase subunit 2 (ccoO), CcoQ (ccoQ), Cbb3-type cytochrome oxidase subunit 3 (ccoP), ferredoxin (ccoG), hypothetical protein (orf86), global transcriptional regulator (fnrL), and anaerobic coproporphyrinogen III oxidase (hemN2) genes, complete cds; and hypothetical protein gene, partial cds Length = 11731 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 ccggcgtgccgacggcggcgg 379 ||||||||||||||||||||| Sbjct: 6342 ccggcgtgccgacggcggcgg 6322
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 cgacggcggcggggaccatgt 388 ||||||||||||||||||||| Sbjct: 2885350 cgacggcggcggggaccatgt 2885370
>emb|CR385433.1| Gallus gallus finished cDNA, clone ChEST463g11 Length = 762 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 ggcggcgggggcctggccggt 491 ||||||||||||||||||||| Sbjct: 46 ggcggcgggggcctggccggt 66
>emb|BX932546.2| Gallus gallus finished cDNA, clone ChEST633m15 Length = 679 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 ggcggcgggggcctggccggt 491 ||||||||||||||||||||| Sbjct: 183 ggcggcgggggcctggccggt 203
>emb|BX935352.1| Gallus gallus finished cDNA, clone ChEST955c15 Length = 1293 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 ggcggcgggggcctggccggt 491 ||||||||||||||||||||| Sbjct: 180 ggcggcgggggcctggccggt 200
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 506 gctgcggcgcggcctgcgcgg 526 ||||||||||||||||||||| Sbjct: 7457689 gctgcggcgcggcctgcgcgg 7457669
>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence Length = 238126 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 agagaccgagcaagcaagcaagca 275 |||||| ||||||||||||||||| Sbjct: 154389 agagacagagcaagcaagcaagca 154412
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctgaacctttcccgggtctg 144 |||||||||||||||||||| Sbjct: 118406 ctgaacctttcccgggtctg 118387
>ref|XM_519160.1| PREDICTED: Pan troglodytes similar to mitochondrial malate dehydrogenase precursor (LOC463484), mRNA Length = 1917 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cacggcggcgggggcctggc 487 |||||||||||||||||||| Sbjct: 1569 cacggcggcgggggcctggc 1550
>gb|BT016776.1| Zea mays clone Contig609 mRNA sequence Length = 1943 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 71 accgagcaagcaagcaagca 90
>gb|AC103621.6| Mus musculus chromosome 5, clone RP24-230J14, complete sequence Length = 169247 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 137563 agcaagcaagcaagcatggc 137544
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgtgctgctgcggcgcggcc 519 |||||||||||||||||||| Sbjct: 4237144 cgtgctgctgcggcgcggcc 4237163
>ref|XM_427965.1| PREDICTED: Gallus gallus similar to aortic preferentially expressed gene 1 (LOC430406), partial mRNA Length = 1622 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 gaaccagagcaggcagagaccgag 261 |||||||||||||| ||||||||| Sbjct: 535 gaaccagagcaggcggagaccgag 558
>ref|XM_426718.1| PREDICTED: Gallus gallus similar to DKFZP434D146 protein (LOC429163), mRNA Length = 3495 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 tgctgcggcgcggcctgcgc 524 |||||||||||||||||||| Sbjct: 908 tgctgcggcgcggcctgcgc 927
>gb|AC116500.13| Mus musculus chromosome 5, clone RP24-297N9, complete sequence Length = 177689 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 aggcagagaccgagcaagcaagcaagca 275 ||||||||| | |||||||||||||||| Sbjct: 35033 aggcagagagctagcaagcaagcaagca 35006
>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence Length = 175566 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 cgggcccagcacggcggcgggggc 482 |||| ||||||||||||||||||| Sbjct: 84489 cggggccagcacggcggcgggggc 84512
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 atgaccggcgtgccgacggcggcg 378 |||||||||||| ||||||||||| Sbjct: 2426970 atgaccggcgtggcgacggcggcg 2426993
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 gcccagcacggcggcgggggcctg 485 |||||||||||||||| ||||||| Sbjct: 920094 gcccagcacggcggcgagggcctg 920117
>ref|XM_991368.1| PREDICTED: Mus musculus gene model 967, (NCBI) (Gm967), mRNA Length = 3026 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 cgggcccagcacggcggcgggggc 482 |||| ||||||||||||||||||| Sbjct: 762 cggggccagcacggcggcgggggc 739
>ref|XM_912427.2| PREDICTED: Mus musculus gene model 967, (NCBI) (Gm967), mRNA Length = 2907 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 cgggcccagcacggcggcgggggc 482 |||| ||||||||||||||||||| Sbjct: 636 cggggccagcacggcggcgggggc 613
>ref|XM_355152.5| PREDICTED: Mus musculus gene model 967, (NCBI) (Gm967), mRNA Length = 2670 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 cgggcccagcacggcggcgggggc 482 |||| ||||||||||||||||||| Sbjct: 405 cggggccagcacggcggcgggggc 382
>gb|AC005077.5| Homo sapiens BAC clone CTA-228D17 from 7, complete sequence Length = 240379 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 cacggcggcgggggcctggc 487 |||||||||||||||||||| Sbjct: 142369 cacggcggcgggggcctggc 142388
>gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome 19, complete sequence Length = 194681 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 cgggcccagcacggcggcgggggc 482 |||| ||||||||||||||||||| Sbjct: 151372 cggggccagcacggcggcgggggc 151395
>gb|AC133172.4| Mus musculus BAC clone RP24-273H5 from chromosome 18, complete sequence Length = 206797 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggcgcgc 283 |||||||||||||||| ||||||| Sbjct: 95463 agcaagcaagcaagcaaggcgcgc 95440
>gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-439E2, Complete Sequence, complete sequence Length = 211996 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 122214 accgagcaagcaagcaagca 122195
>gb|AC121881.3| Mus musculus BAC clone RP24-134L8 from chromosome 8, complete sequence Length = 184359 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 2243 agcaagcaagcaagcatggc 2224
>gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, complete sequence Length = 185947 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 184496 agcaagcaagcaagcatggc 184477
>gb|AC121988.2| Mus musculus BAC clone RP24-295B16 from 10, complete sequence Length = 154373 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gagcaagcaagcaagcatgg 278 |||||||||||||||||||| Sbjct: 146063 gagcaagcaagcaagcatgg 146082
>gb|AC102692.6| Mus musculus chromosome 18, clone RP24-491K18, complete sequence Length = 225042 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggcgcgc 283 |||||||||||||||| ||||||| Sbjct: 29721 agcaagcaagcaagcaaggcgcgc 29698
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aaagaagaagatacaagtaa 55 |||||||||||||||||||| Sbjct: 4593439 aaagaagaagatacaagtaa 4593458
>gb|AE008916.1| Salmonella typhimurium LT2, section 220 of 220 of the complete genome Length = 13852 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 tgaccggcgtgccgacggcggcgg 379 ||||||||||||||| |||||||| Sbjct: 13530 tgaccggcgtgccgatggcggcgg 13553
>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13 Length = 244800 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgtgctgctgcggcgcggcc 519 |||||||||||||||||||| Sbjct: 78099 cgtgctgctgcggcgcggcc 78118
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 atgaccggcgtgccgacggcggcg 378 |||||||||||| ||||||||||| Sbjct: 606935 atgaccggcgtggcgacggcggcg 606958
>emb|BX294135.1| Pirellula sp. strain 1 complete genome; segment 3/24 Length = 340750 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gaacatgaccggcgtgccga 370 |||||||||||||||||||| Sbjct: 185855 gaacatgaccggcgtgccga 185836
>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 14/14 Length = 278492 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgtgctgctgcggcgcggcc 519 |||||||||||||||||||| Sbjct: 114126 cgtgctgctgcggcgcggcc 114145
>emb|AL645594.9| Mouse DNA sequence from clone RP23-316C11 on chromosome 11 Contains the Cct6b gene for chaperonin subunit 6b (zeta), a barrier to autointegration factor 1 (Banf1) pseudogene, a GTP binding protein 3 (Gtpbp3) pseudogene, a ribosomal protein S20 (Rps20) pseudogene, three novel genes, the Lig3 gene for ATP-dependent DNA ligase III,, complete sequence Length = 178364 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 178023 accgagcaagcaagcaagca 178042
>emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 20/20 Length = 88037 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 tgaccggcgtgccgacggcggcgg 379 ||||||||||||||| |||||||| Sbjct: 87715 tgaccggcgtgccgatggcggcgg 87738
>emb|AL646089.6| Mouse DNA sequence from clone RP23-169P3 on chromosome 11, complete sequence Length = 30135 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 1659 accgagcaagcaagcaagca 1678
>gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, complete sequence Length = 145880 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gagaccgagcaagcaagcaagcat 276 |||| ||||||||||||||||||| Sbjct: 23595 gagagcgagcaagcaagcaagcat 23618
>gb|AC182768.3| Pan troglodytes BAC clone CH251-178I17 from chromosome 7, complete sequence Length = 186886 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cacggcggcgggggcctggc 487 |||||||||||||||||||| Sbjct: 12390 cacggcggcgggggcctggc 12371
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence Length = 197615 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 cgggaacatgaccggcgtgccgac 371 ||||| |||||||||||||||||| Sbjct: 2604 cgggatcatgaccggcgtgccgac 2581
>gb|AF022214.1| Mycobacteriophage D29, complete genome Length = 49136 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 ccagcacggcggcgggggcc 483 |||||||||||||||||||| Sbjct: 5011 ccagcacggcggcgggggcc 5030
>ref|XM_939632.1| PREDICTED: Homo sapiens similar to GTF2I repeat domain containing 1 isoform 2 (LOC650543), mRNA Length = 1155 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cacggcggcgggggcctggc 487 |||||||||||||||||||| Sbjct: 88 cacggcggcgggggcctggc 69
>gb|AC092015.2| Homo sapiens chromosome 1 clone RP11-358L14, complete sequence Length = 161815 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 136079 agcaagcaagcaagcatggc 136098
>gb|AC008326.9| Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone BACR39J17, complete sequence Length = 148780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 38882 agcaagcaagcaagcatggc 38863
>gb|AC156505.6| Mus musculus 10 BAC RP24-270N22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 190789 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 tctgaacctttcccgggtctgtga 147 |||||| ||||||||||||||||| Sbjct: 46730 tctgaatctttcccgggtctgtga 46707
>gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone BACR13J07, complete sequence Length = 174287 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 95584 agcaagcaagcaagcatggc 95565
>gb|AC093758.3| Homo sapiens BAC clone RP11-66L22 from 4, complete sequence Length = 128628 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 catttacctctctgaacctt 133 |||||||||||||||||||| Sbjct: 62976 catttacctctctgaacctt 62957
>gb|AC155644.7| Mus musculus 10 BAC RP24-435P22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 4068 accgagcaagcaagcaagca 4049
>gb|AC145375.5| Pan troglodytes BAC clone RP43-57M5 from chromosome 7, complete sequence Length = 217260 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 cacggcggcgggggcctggc 487 |||||||||||||||||||| Sbjct: 110444 cacggcggcgggggcctggc 110463
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 ctgcggcgcggcctgcgcgg 526 |||||||||||||||||||| Sbjct: 3452844 ctgcggcgcggcctgcgcgg 3452825
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 tgaccggcgtgccgacggcggcgg 379 ||||||||||||||| |||||||| Sbjct: 4584907 tgaccggcgtgccgatggcggcgg 4584930
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 cggcctgcgcggcgttgttg 534 |||||||||||||||||||| Sbjct: 4579536 cggcctgcgcggcgttgttg 4579517
>gb|AC153368.5| Mus musculus 10 BAC RP23-269H21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 163268 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gagcaagcaagcaagcatgg 278 |||||||||||||||||||| Sbjct: 4547 gagcaagcaagcaagcatgg 4566
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 tgaccggcgtgccgacggcggcgg 379 ||||||||||||||| |||||||| Sbjct: 4791639 tgaccggcgtgccgatggcggcgg 4791662
>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete sequence Length = 270751 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 agcaagcaagcaagcatggc 279 |||||||||||||||||||| Sbjct: 232078 agcaagcaagcaagcatggc 232059
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cggggaccatgtggccggcg 396 |||||||||||||||||||| Sbjct: 112105 cggggaccatgtggccggcg 112124
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 356 tgaccggcgtgccgacggcggcgg 379 ||||||||||||||| |||||||| Sbjct: 4755378 tgaccggcgtgccgatggcggcgg 4755401
>gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, complete sequence Length = 183837 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gagcaagcaagcaagcatgg 278 |||||||||||||||||||| Sbjct: 160103 gagcaagcaagcaagcatgg 160084
>gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, complete sequence Length = 213862 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 158583 accgagcaagcaagcaagca 158564
>gb|U68480.1|MTU68480 Mycobacterium tuberculosis putative arabinosyl transferase (embC, embA and embB) genes, complete cds Length = 10249 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgtgctgctgcggcgcggcc 519 |||||||||||||||||||| Sbjct: 5270 cgtgctgctgcggcgcggcc 5289
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tggccggcgaccgggtggcc 407 |||||||||||||||||||| Sbjct: 2941934 tggccggcgaccgggtggcc 2941915
>gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from clone y126 Length = 37164 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgtgctgctgcggcgcggcc 519 |||||||||||||||||||| Sbjct: 31472 cgtgctgctgcggcgcggcc 31491
>emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 4B7 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 132348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 101778 accgagcaagcaagcaagca 101759
>emb|AL713886.1|CNS07YOY Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 247A17 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 126128 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 accgagcaagcaagcaagca 275 |||||||||||||||||||| Sbjct: 107244 accgagcaagcaagcaagca 107263 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,455,677 Number of Sequences: 3902068 Number of extensions: 4455677 Number of successful extensions: 131027 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128929 Number of HSP's gapped (non-prelim): 2096 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)