ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYT1_XENLA (P70047) Myelin transcription factor 1 (X-MyT1) 32 0.52
2STK36_PONPY (Q5RAJ5) Serine/threonine-protein kinase 36 (EC 2.7.... 30 2.6
3STK36_HUMAN (Q9NRP7) Serine/threonine-protein kinase 36 (EC 2.7.... 30 2.6
4SSB_PSESM (Q889U1) Single-stranded DNA-binding protein (SSB) (He... 30 2.6
5VIRD3_AGRTU (P09816) Protein virD3 30 2.6
6SAHH_ACIAD (Q6FA43) Adenosylhomocysteinase (EC 3.3.1.1) (S-adeno... 30 3.4
7WDR17_HUMAN (Q8IZU2) WD-repeat protein 17 25 6.8
8PLMN_PETMA (P33574) Plasminogen (EC 3.4.21.7) (Fragments) 28 9.9
9DIT1_YEAST (P21623) Spore wall maturation protein DIT1 28 9.9

>MYT1_XENLA (P70047) Myelin transcription factor 1 (X-MyT1)|
          Length = 1122

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 219 PTEIKHQEVTLHACNRKKNRTPRDARNARPMERRKSIYCSIAMD 350
           P+++  QEV+L +C   + R  +++    P+ +RKS    +A+D
Sbjct: 21  PSDLIEQEVSLESCPLSRKRKLQESEQENPLSKRKSHPLKLALD 64



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>STK36_PONPY (Q5RAJ5) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1315

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 212 GMFG*AKIAVD*EPLIWQELELYSLRIPAKPPQTEQGKCCFYLFLILVCI 63
           G  G   +  D +P+ W     ++L  PA+   T  G C FY  L+++ +
Sbjct: 808 GQLGQQGVTFDLQPMEWMAAATHALSAPAEVRLTPPGSCGFYDGLLILLL 857



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>STK36_HUMAN (Q9NRP7) Serine/threonine-protein kinase 36 (EC 2.7.11.1) (Fused|
           homolog)
          Length = 1315

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 212 GMFG*AKIAVD*EPLIWQELELYSLRIPAKPPQTEQGKCCFYLFLILVCI 63
           G  G   +  D +P+ W     ++L  PA+   T  G C FY  L+++ +
Sbjct: 808 GQLGQQGVTFDLQPMEWMAAATHALSAPAEVRLTPPGSCGFYDGLLILLL 857



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>SSB_PSESM (Q889U1) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 189

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 128 QGFAGNIALIPAKSMALNPQQSLPNRTSPQTNGNQASRSNTPRM*QEKESDTERCTQRKA 307
           QG  GN      +     PQQS P +++PQ N NQ      P+    + +  ++  Q  A
Sbjct: 123 QGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQ----QPPQQRDSRPAPQQQAPQPAA 178

Query: 308 D 310
           D
Sbjct: 179 D 179



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>VIRD3_AGRTU (P09816) Protein virD3|
          Length = 201

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +2

Query: 14  VTFTALKYQTQVQHIHGYTPESKTGKNNTCPVRFEEVWQGFAGNIALIPAKSMALNPQQS 193
           +  T L+Y     H     P S   KN+  P  ++   +  AGN+     +++ +  Q  
Sbjct: 64  IASTGLRYVAATLHWSEIAPLSLINKNDLAPAAYDFETRNDAGNVTAKVGRAVPVPKQGR 123

Query: 194 LPNRTSPQTNGNQASRSNTP-RM*QEKESDTERCTQRKADGTEEI 325
           L    +      + SR N+  R+  + E+  E    RK  G+  +
Sbjct: 124 LGKMLASVPLSTRISRVNSDRRLPTDAENHPETRDPRKGRGSHGV 168



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>SAHH_ACIAD (Q6FA43) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 467

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 8   EGVTFTAL---KYQTQVQHIHGYTPESKTGKNNTCPVRFEEVWQ 130
           +G   TAL   KY T + HIHG T E+ TG       R  E+W+
Sbjct: 144 DGGDLTALVHEKYPTLLDHIHGITEETTTGVQ-----RLLEMWK 182



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>WDR17_HUMAN (Q8IZU2) WD-repeat protein 17|
          Length = 1322

 Score = 24.6 bits (52), Expect(2) = 6.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 210  PLKPTEIKHQEVTLHACNRKKNRTPRDARNARPMERRKSIYCSI 341
            PLK   +  +     AC +  NR+  D+    P + ++ IY ++
Sbjct: 1200 PLKIEYLSEELDAWRACTQSTNRSLEDSPYTPPSDSQRMIYATL 1243



 Score = 22.3 bits (46), Expect(2) = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 64   IHTRIKNR*KQHLPCSV*GGLAGIRREYSS 153
            +HT  + R +  + C   G L  IRR+Y S
Sbjct: 1150 LHTCTEARNELLILCGYIGALLAIRRQYQS 1179



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>PLMN_PETMA (P33574) Plasminogen (EC 3.4.21.7) (Fragments)|
          Length = 325

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 2   GTEGVTFTALKYQTQVQHIHGYTPESKTGKNNTCPVRFEEVWQGFAGNIAL 154
           G   VT + L+   Q  H H ++P+S  G    C    +   +G+ G  AL
Sbjct: 48  GAASVTRSGLRGDEQTPHRHTFSPQSFAGLTTAC---VKGTGEGYRGTAAL 95



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>DIT1_YEAST (P21623) Spore wall maturation protein DIT1|
          Length = 536

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +3

Query: 165 NQWLLIH----SNLCLTEHPLKPTEIKHQEV 245
           N W + H    S L L+EHP+   E+K+ E+
Sbjct: 144 NNWFVYHILDQSQLSLSEHPIVTKEVKYHEL 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,928,116
Number of Sequences: 219361
Number of extensions: 1160797
Number of successful extensions: 3320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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