ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone... 50 0.006
2gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete ... 46 0.095
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
4dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
5dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.38
6gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete se... 42 1.5
7gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 42 1.5
8gb|AC025731.12|AC025731 Homo sapiens BAC clone RP11-48H21 from Y... 42 1.5
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.5
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
14emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126... 42 1.5
15dbj|AP006381.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.5
16dbj|AP006123.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.5
17dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.5
18ref|XM_472422.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
19gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.9
20gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
21gb|AE006453.1| Lactococcus lactis subsp. lactis IL1403 section 2... 40 5.9
22gb|AC154508.2| Mus musculus BAC clone RP24-96P6 from chromosome ... 40 5.9
23ref|XM_571018.1| Cryptococcus neoformans var. neoformans JEC21 i... 40 5.9
24emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.9
25gb|AC164570.3| Mus musculus BAC clone CH25-194I22 from chromosom... 40 5.9
26gb|AC147501.9| Medicago truncatula clone mth2-12n2, complete seq... 40 5.9
27emb|AL023803.3|HS616B8 Human DNA sequence from clone RP4-616B8 o... 40 5.9
28gb|AY465427.2| Triticum turgidum subsp. durum putative C3H2C3 RI... 40 5.9
29gb|AC154509.2| Mus musculus BAC clone RP23-207P21 from chromosom... 40 5.9
30emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
31emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i... 40 5.9
32emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chro... 40 5.9
33gb|AC158737.14| Medicago truncatula clone mth2-154f20, complete ... 40 5.9
34gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete s... 40 5.9
35ref|NM_067778.2| Caenorhabditis elegans M70.3a (M70.3) mRNA, com... 40 5.9
36ref|NM_067779.2| Caenorhabditis elegans M70.3b (M70.3) mRNA, com... 40 5.9
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
40gb|AC079811.6| Homo sapiens BAC clone CTD-2502L6 from 2, complet... 40 5.9
41gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.9
42dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
43dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
45dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
46dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
47dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
48emb|AL954320.5| Zebrafish DNA sequence from clone CH211-220G18 i... 40 5.9
49gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete... 40 5.9
50gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.9
51emb|AL840631.9| Zebrafish DNA sequence from clone DKEY-210J14, c... 40 5.9
52dbj|AP006665.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 5.9
53dbj|AP004529.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.9
54gb|AF047661.2| Caenorhabditis elegans cosmid M70, complete sequence 40 5.9 
>dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT45G21, TM0151,
              complete sequence
          Length = 109264

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 1      aggaacggagggagtaacatttaca 25
              |||||||||||||||||||||||||
Sbjct: 104899 aggaacggagggagtaacatttaca 104875
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>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
          Length = 124152

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 1     aggaacggagggagtaacattta 23
             |||||||||||||||||||||||
Sbjct: 69067 aggaacggagggagtaacattta 69089
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 2       ggaacggagggagtaacattta 23
               ||||||||||||||||||||||
Sbjct: 4610429 ggaacggagggagtaacattta 4610450
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1297_C09
          Length = 163378

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2      ggaacggagggagtaacattta 23
              ||||||||||||||||||||||
Sbjct: 145808 ggaacggagggagtaacattta 145829
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>dbj|AP006143.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16L07, TM0254,
             complete sequence
          Length = 118592

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 2     ggaacggagggagtaacattta 23
             ||||||||||||||||||||||
Sbjct: 28251 ggaacggagggagtaacattta 28230
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>gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete sequence
          Length = 120323

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     ggaacggagggagtaacattt 22
             |||||||||||||||||||||
Sbjct: 27776 ggaacggagggagtaacattt 27756
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>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic
             sequence, complete sequence
          Length = 138826

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aacggagggagtaacatttac 24
             |||||||||||||||||||||
Sbjct: 51386 aacggagggagtaacatttac 51366
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>gb|AC025731.12|AC025731 Homo sapiens BAC clone RP11-48H21 from Y, complete sequence
          Length = 91654

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 153   taattcctgccaaatcaatgg 173
             |||||||||||||||||||||
Sbjct: 15102 taattcctgccaaatcaatgg 15122
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 5        acggagggagtaacatttaca 25
                |||||||||||||||||||||
Sbjct: 20078606 acggagggagtaacatttaca 20078586
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 4       aacggagggagtaacatttac 24
               |||||||||||||||||||||
Sbjct: 6592176 aacggagggagtaacatttac 6592156



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 382      cgcggacgacgccggcgccg 401
                ||||||||||||||||||||
Sbjct: 26340392 cgcggacgacgccggcgccg 26340411
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 405     gagttcggcgcgggcgcggtc 425
               |||||||||||||||||||||
Sbjct: 2506758 gagttcggcgcgggcgcggtc 2506778
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 4       aacggagggagtaacatttac 24
               |||||||||||||||||||||
Sbjct: 6658643 aacggagggagtaacatttac 6658623



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 382      cgcggacgacgccggcgccg 401
                ||||||||||||||||||||
Sbjct: 26654650 cgcggacgacgccggcgccg 26654669
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 5        acggagggagtaacatttaca 25
                |||||||||||||||||||||
Sbjct: 20004820 acggagggagtaacatttaca 20004800
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>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 99791

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     acggagggagtaacatttaca 25
             |||||||||||||||||||||
Sbjct: 58768 acggagggagtaacatttaca 58748
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>dbj|AP006381.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09G09, TM0234,
             complete sequence
          Length = 105887

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     aggaacggagggagtaacatt 21
             |||||||||||||||||||||
Sbjct: 26659 aggaacggagggagtaacatt 26679
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>dbj|AP006123.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT41E18, TM0207,
             complete sequence
          Length = 115290

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 108   ttcggtttgaggaggtttggc 128
             |||||||||||||||||||||
Sbjct: 37874 ttcggtttgaggaggtttggc 37854
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>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017,
             complete sequence
          Length = 121127

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     ggaacggagggagtaacattt 22
             |||||||||||||||||||||
Sbjct: 13220 ggaacggagggagtaacattt 13200
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>ref|XM_472422.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 555

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 382 cgcggacgacgccggcgccg 401
           ||||||||||||||||||||
Sbjct: 333 cgcggacgacgccggcgccg 314
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     ggaaatcaagcatcaagaag 243
               ||||||||||||||||||||
Sbjct: 1384118 ggaaatcaagcatcaagaag 1384137
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>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   cgcggacgacgccggcgccg 401
             ||||||||||||||||||||
Sbjct: 42224 cgcggacgacgccggcgccg 42243
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>gb|AE006453.1| Lactococcus lactis subsp. lactis IL1403 section 215 of 218 of the
            complete genome
          Length = 12582

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   gaatcaaaaacaggtaaaaa 93
            ||||||||||||||||||||
Sbjct: 4414 gaatcaaaaacaggtaaaaa 4433
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>gb|AC154508.2| Mus musculus BAC clone RP24-96P6 from chromosome 16, complete sequence
          Length = 214625

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 73     agaatcaaaaacaggtaaaaacaa 96
              ||||||||||||||| ||||||||
Sbjct: 154296 agaatcaaaaacaggaaaaaacaa 154273
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>ref|XM_571018.1| Cryptococcus neoformans var. neoformans JEC21 integral to membrane
            protein (CNE04960) partial mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  ggaaatcaagcatcaagaag 243
            ||||||||||||||||||||
Sbjct: 1153 ggaaatcaagcatcaagaag 1134
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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
             complete sequence
          Length = 144811

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aacggagggagtaacattta 23
             ||||||||||||||||||||
Sbjct: 28518 aacggagggagtaacattta 28537
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>gb|AC164570.3| Mus musculus BAC clone CH25-194I22 from chromosome 5, complete sequence
          Length = 103796

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ggtttgaggaggtttggcag 130
             ||||||||||||||||||||
Sbjct: 25728 ggtttgaggaggtttggcag 25709
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>gb|AC147501.9| Medicago truncatula clone mth2-12n2, complete sequence
          Length = 140523

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aacggagggagtaacattta 23
             ||||||||||||||||||||
Sbjct: 15018 aacggagggagtaacattta 15037
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>emb|AL023803.3|HS616B8 Human DNA sequence from clone RP4-616B8 on chromosome 20q11.22-12
              Contains the DDX35 gene for DEAD/H box polypeptide 35, the
              NPM1P19 gene for nucleophosmin 1 (nucleolar phosphoprotein
              B23, numatrin) pseudogene 19, the C20orf129 gene for
              chromosome 20 open reading frame 129, the 3' end of the
              PPP1R16B gene for protein phosphatase 1 regulatory
              (inhibitory) subunit 16B and four CpG islands, complete
              sequence
          Length = 155379

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    tcttaatccacagcaatctt 194
              ||||||||||||||||||||
Sbjct: 101560 tcttaatccacagcaatctt 101579
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>gb|AY465427.2| Triticum turgidum subsp. durum putative C3H2C3 RING-finger protein
            (6G2) gene, complete cds
          Length = 3646

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 2    ggaacggagggagtaacatttaca 25
            |||||||||||||||| |||||||
Sbjct: 1866 ggaacggagggagtaatatttaca 1843
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>gb|AC154509.2| Mus musculus BAC clone RP23-207P21 from chromosome 16, complete sequence
          Length = 203692

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     agaatcaaaaacaggtaaaaacaa 96
              ||||||||||||||| ||||||||
Sbjct: 124333 agaatcaaaaacaggaaaaaacaa 124356
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>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   cgcggacgacgccggcgccg 401
             ||||||||||||||||||||
Sbjct: 54044 cgcggacgacgccggcgccg 54025
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>emb|CR932958.2| Medicago truncatula chromosome 5 clone mth2-174i23, COMPLETE SEQUENCE
          Length = 122746

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aggaacggagggagtaacat 20
             ||||||||||||||||||||
Sbjct: 55052 aggaacggagggagtaacat 55033
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>emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chromosome 11 Contains the 5'
              end of a novel gene, complete sequence
          Length = 191046

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gcatgtaacaggaaaaagaa 274
              ||||||||||||||||||||
Sbjct: 164155 gcatgtaacaggaaaaagaa 164174
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>gb|AC158737.14| Medicago truncatula clone mth2-154f20, complete sequence
          Length = 114538

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aggaacggagggagtaacat 20
             ||||||||||||||||||||
Sbjct: 85538 aggaacggagggagtaacat 85557
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>gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete sequence
          Length = 110937

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aggaacggagggagtaacat 20
             ||||||||||||||||||||
Sbjct: 77451 aggaacggagggagtaacat 77470
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>ref|NM_067778.2| Caenorhabditis elegans M70.3a (M70.3) mRNA, complete cds
          Length = 2772

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 224  ggaaatcaagcatcaagaag 243
            ||||||||||||||||||||
Sbjct: 2069 ggaaatcaagcatcaagaag 2088
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>ref|NM_067779.2| Caenorhabditis elegans M70.3b (M70.3) mRNA, complete cds
          Length = 2722

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 224  ggaaatcaagcatcaagaag 243
            ||||||||||||||||||||
Sbjct: 1985 ggaaatcaagcatcaagaag 2004
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 4        aacggagggagtaacattta 23
                ||||||||||||||||||||
Sbjct: 21378768 aacggagggagtaacattta 21378787



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 382      cgcggacgacgccggcgccg 401
                ||||||||||||||||||||
Sbjct: 20543416 cgcggacgacgccggcgccg 20543397
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 4        aacggagggagtaacattta 23
                ||||||||||||||||||||
Sbjct: 27420272 aacggagggagtaacattta 27420253



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 4       aacggagggagtaacattta 23
               ||||||||||||||||||||
Sbjct: 5064354 aacggagggagtaacattta 5064373
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 378      cccgcgcggacgacgccggcgccg 401
                |||||||||||||||||| |||||
Sbjct: 32601825 cccgcgcggacgacgccgccgccg 32601848



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 6        cggagggagtaacatttaca 25
                ||||||||||||||||||||
Sbjct: 22439104 cggagggagtaacatttaca 22439123
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>gb|AC079811.6| Homo sapiens BAC clone CTD-2502L6 from 2, complete sequence
          Length = 130618

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ttgaggaggtttggcaggga 133
             ||||||||||||||||||||
Sbjct: 10792 ttgaggaggtttggcaggga 10773
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 339     atcgccatggacgcggccacggcc 362
               |||||||||| |||||||||||||
Sbjct: 3589296 atcgccatgggcgcggccacggcc 3589273
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>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0695H10
          Length = 136883

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   cccgcgcggacgacgccggcgccg 401
             |||||||||||||||||| |||||
Sbjct: 64620 cccgcgcggacgacgccgccgccg 64643
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>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0003M19
          Length = 171790

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aacggagggagtaacattta 23
              ||||||||||||||||||||
Sbjct: 125933 aacggagggagtaacattta 125914
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>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0672C09
          Length = 145655

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     cggagggagtaacatttaca 25
             ||||||||||||||||||||
Sbjct: 63242 cggagggagtaacatttaca 63261
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>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0013G02
          Length = 163419

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      cggagggagtaacatttaca 25
              ||||||||||||||||||||
Sbjct: 136374 cggagggagtaacatttaca 136393
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>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0049I08
          Length = 144379

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aacggagggagtaacattta 23
              ||||||||||||||||||||
Sbjct: 106043 aacggagggagtaacattta 106062
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>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_E12
          Length = 119691

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aacggagggagtaacattta 23
             ||||||||||||||||||||
Sbjct: 20521 aacggagggagtaacattta 20540
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>emb|AL954320.5| Zebrafish DNA sequence from clone CH211-220G18 in linkage group 25,
              complete sequence
          Length = 215130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 19     atttacagcgctgaaataccaaacacaa 46
              |||| |||||||||||| ||||||||||
Sbjct: 162318 attttcagcgctgaaattccaaacacaa 162345
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>gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete sequence
          Length = 233833

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    ttgccctgttcggtttgagg 119
              ||||||||||||||||||||
Sbjct: 161361 ttgccctgttcggtttgagg 161380
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      caacatatccatggatacac 69
               ||||||||||||||||||||
Sbjct: 1742053 caacatatccatggatacac 1742034
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>emb|AL840631.9| Zebrafish DNA sequence from clone DKEY-210J14, complete sequence
          Length = 171481

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaaaacaggtaaaaacaaca 98
              ||||||||||||||||||||
Sbjct: 101589 aaaaacaggtaaaaacaaca 101608
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>dbj|AP006665.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT31L13, TM0360,
             complete sequence
          Length = 91632

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aggaacggagggagtaacat 20
             ||||||||||||||||||||
Sbjct: 43103 aggaacggagggagtaacat 43084
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>dbj|AP004529.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT01K12, TM0058a,
             complete sequence
          Length = 78249

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aggaacggagggagtaacat 20
             ||||||||||||||||||||
Sbjct: 11487 aggaacggagggagtaacat 11468
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>gb|AF047661.2| Caenorhabditis elegans cosmid M70, complete sequence
          Length = 40314

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  ggaaatcaagcatcaagaag 243
            ||||||||||||||||||||
Sbjct: 3478 ggaaatcaagcatcaagaag 3459


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,266,015
Number of Sequences: 3902068
Number of extensions: 3266015
Number of successful extensions: 73786
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72531
Number of HSP's gapped (non-prelim): 1255
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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