ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (... 28 7.7
2CO8A_MOUSE (Q8K182) Complement component C8 alpha chain precurso... 28 7.7

>HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 525

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = +2

Query: 119 ASRAMNQGHAKLNSNCNHGRKVKEFQGKEKKGDGGVHGKSFITGSTSGITPIRSPCMRQF 298
           A R  NQ H    ++ NH   V + Q ++K     +   S    S S +TP  S     F
Sbjct: 209 AGRGPNQSHGIGTASWNHSTTVPQPQARDKPPPIALIASSCKEESASSVTPSSSSTSSSF 268

Query: 299 EATPSREKAKS 331
           +   +   A S
Sbjct: 269 QVLANGATAAS 279



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>CO8A_MOUSE (Q8K182) Complement component C8 alpha chain precursor (Complement|
           component 8 alpha subunit)
          Length = 587

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 227 HGKSFITGSTSGITPIRSPCMRQFEATPSREKAKSITGSI 346
           +GKS   G T G+ P++SP     E T S  KA S    +
Sbjct: 242 NGKSHSAGVTVGVAPVKSPV--SIEVTGSGSKASSFLNKL 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,946,051
Number of Sequences: 219361
Number of extensions: 885315
Number of successful extensions: 2949
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2944
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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