Clone Information

BLAST Search Result

Clone Name	rbart41h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)	32	0.99
2	PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediat...	30	2.2
3	EPIPL_MOUSE (Q8R0W0) Epiplakin	30	3.8
4	PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal prot...	30	3.8
5	HMP_PSEAE (Q9I0H4) Flavohemoprotein (Hemoglobin-like protein) (F...	29	6.4
6	FZD6_CANFA (Q8WMU5) Frizzled 6 precursor (Frizzled-6) (Fz-6)	29	6.4
7	SNX19_HUMAN (Q92543) Sorting nexin-19	28	8.4
8	PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)	28	8.4
9	OTE_DROME (P20240) Otefin	28	8.4

>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)|
          Length = 5065

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 4442 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 4501

Query: 290  AAES----QLRRRNYHGPADNTY 234
              E+    QL RR    P    Y
Sbjct: 4502 THENLTYVQLLRRCVPDPDTGLY 4524



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 3908 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 3967

Query: 290  AAES----QLRRRNYHGPADNTY 234
              E+    QL RR    P    Y
Sbjct: 3968 THENLTYVQLLRRCVPDPDTGLY 3990



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 3374 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 3433

Query: 290  AAES----QLRRRNYHGPADNTY 234
              E+    QL RR    P    Y
Sbjct: 3434 THENLTYVQLLRRCVPDPDTGLY 3456



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 2840 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 2899

Query: 290  AAES----QLRRRNYHGPADNTY 234
              E+    QL RR    P    Y
Sbjct: 2900 THENLTYVQLLRRCVPDPDTGLY 2922



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 2306 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 2365

Query: 290  AAES----QLRRRNYHGPADNTY 234
              E+    QL RR    P    Y
Sbjct: 2366 THENLTYVQLLRRCVPDPDTGLY 2388



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437 VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
           VR H     EAQ AT   +DP+ + + PVD   R  Y         +DP D TK F    
Sbjct: 687 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDQMLNLILLDPSDDTKGFFDPN 746

Query: 290 AAES----QLRRRNYHGPADNTY 234
             E+    QL  R    P    Y
Sbjct: 747 THENLTYLQLLERCVRDPETGLY 769



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 4976 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 5035

Query: 290  AAES 279
              E+
Sbjct: 5036 THEN 5039



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 1648 VREHGIRLLEAQIATGGIIDPVHSHRVPVDVAYRCGYFDEEMNRILADPSDDTKGFFDPN 1707

Query: 290  AAES----QLRRRNYHGPADNTY 234
              E+    QL  R    P    Y
Sbjct: 1708 THENLTYLQLLERCVEDPETGLY 1730

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>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAYVD---------PHDPTKIFL----QQPAAESQ 276
            +AQ +T   VDP ++ + P+D      Y+D         P +  +++L    Q+PA  SQ
Sbjct: 3061 DAQLSTGGMVDPSKSHRVPLDVAYARGYLDKETNRALTSPRNDARVYLDPSSQEPATYSQ 3120

Query: 275  LRRR 264
            L++R
Sbjct: 3121 LQQR 3124

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>EPIPL_MOUSE (Q8R0W0) Epiplakin|
          Length = 6548

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 5953 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 6012

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 6013 LLRRCVRDPETGFY 6026



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 5438 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 5497

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 5498 LLRRCVRDPETGFY 5511



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 4923 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 4982

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 4983 LLRRCVRDPETGFY 4996



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 4408 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 4467

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 4468 LLRRCVRDPETGFY 4481



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 3893 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 3952

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 3953 LLRRCVRDPETGFY 3966



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 3378 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 3437

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 3438 LLRRCVRDPETGFY 3451



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 2863 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 2922

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 2923 LLRRCVRDPETGFY 2936



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQPAAES----Q 276
            EAQ AT   +DP+ + + PVD   +  Y          DP D TK F      E+    Q
Sbjct: 2348 EAQIATGGVIDPVHSHRVPVDVAYQRGYFDEDMNSILADPGDDTKGFFDPNTHENLTYLQ 2407

Query: 275  LRRRNYHGPADNTY 234
            L RR    P    Y
Sbjct: 2408 LLRRCVRDPETGFY 2421

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>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = -1

Query: 437  VRRHN--QFEAQPATVPRVDPMQAAQTPVDDMMRHAY---------VDPHDPTKIFLQQP 291
            VR H     EAQ AT   +DP+ + + PVD   R  Y          DP D TK F    
Sbjct: 2935 VREHGIRLLEAQIATGGVIDPVHSHRVPVDVAYRRGYFDEEMNRVLADPSDDTKGFFDPN 2994

Query: 290  AAES 279
              E+
Sbjct: 2995 THEN 2998



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 452  NLITSVRRHNQFEAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQPA 288
            NL+ ++      EAQ  T   +DP    + PV D +    VD     +I L Q A
Sbjct: 4438 NLVDNITGQRLLEAQACTGGIIDPSTGERLPVTDAVNKGLVDKIMVDRINLAQKA 4492

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>HMP_PSEAE (Q9I0H4) Flavohemoprotein (Hemoglobin-like protein)|
           (Flavohemoglobin) (Nitric oxide dioxygenase) (EC
           1.14.12.17) (NO oxygenase) (NOD)
          Length = 393

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 2   DQQHTYSQADHFVCTLLPRSGLNPTARHTIVQDNASSILPPRSSLRITRMTPNRYIARV 178
           D    + Q +HF C   PR+G +  A   + ++  +  LP    L    + P  ++A+V
Sbjct: 308 DVSAQHEQVEHFFCYSEPRAGDSADAEGLLSREKLADWLPQERDLDAYFLGPRPFMAQV 366

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>FZD6_CANFA (Q8WMU5) Frizzled 6 precursor (Frizzled-6) (Fz-6)|
          Length = 712

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 437 VRRHNQFEAQPATVPRVDPMQAAQTPVDDMMRH 339
           VR H+ F  +P TVPR   M    T   ++MRH
Sbjct: 16  VRGHSLFTCEPITVPRCMKMAYNMTFFPNLMRH 48

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>SNX19_HUMAN (Q92543) Sorting nexin-19|
          Length = 992

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 416 EAQPATVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQPAAESQL 273
           E QP   P  DP Q  +  VD  +  A V   DP+      P  E++L
Sbjct: 776 EMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSN---SDPGTETEL 820

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>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
 Frame = -1

Query: 416  EAQPATVPRVDPMQAAQTPVDDMMRHAYVD---------PHDPTKIFL----QQPAAESQ 276
            +AQ +T   VDP ++ + P+D      Y+D         P D  +++L    ++P   SQ
Sbjct: 3275 DAQLSTGGIVDPSKSHRVPLDVAYARGYLDKETNRALTSPRDDARVYLDPSTREPVTYSQ 3334

Query: 275  LRRR 264
            L++R
Sbjct: 3335 LQQR 3338

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>OTE_DROME (P20240) Otefin|
          Length = 424

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 410 QPATVPRVDPMQAAQTPVDDMMRHAYVDPHDPTKIFLQQPAAESQL-RRRNY 258
           +P T P   P+Q  +T          V+P    +  ++QPA+  +  R  NY
Sbjct: 136 KPTTAPAAQPVQTRRTSTSSGSERKVVEPLRKPETIVEQPASSKRADREENY 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,365,269
Number of Sequences: 219361
Number of extensions: 1527772
Number of successful extensions: 3909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3909
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result