ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart41h02 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 140 bits (352), Expect = 2e-33 Identities = 73/85 (85%), Positives = 78/85 (91%), Gaps = 1/85 (1%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KE 289 CDLKELV+KFIPEVIGKEIEKATSSIFPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KE Sbjct: 178 CDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKE 237 Query: 288 DVGVKLDRPDGDEVIPGAEEVAAAE 214 D+G KLDRP DE + G +EVAAAE Sbjct: 238 DIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 132 bits (333), Expect = 3e-31 Identities = 66/83 (79%), Positives = 72/83 (86%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKED 286 CDLKELV KFIPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFD+GKLMEVHGDY ED Sbjct: 178 CDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSED 237 Query: 285 VGVKLDRPDGDEVIPGAEEVAAA 217 VGVKLDRP +E P A EV A Sbjct: 238 VGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 127 bits (320), Expect = 1e-29 Identities = 61/82 (74%), Positives = 69/82 (84%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKED 286 CDLK+LV KFIPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED Sbjct: 178 CDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNED 237 Query: 285 VGVKLDRPDGDEVIPGAEEVAA 220 +G KLDRP + V E + A Sbjct: 238 IGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 122 bits (305), Expect = 6e-28 Identities = 60/84 (71%), Positives = 69/84 (82%), Gaps = 1/84 (1%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KE 289 CDLKELV KFIPE IG+EIEKAT I+PLQNV++RKVKILKAPKFDLGKLMEVHGDY E Sbjct: 178 CDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAE 237 Query: 288 DVGVKLDRPDGDEVIPGAEEVAAA 217 DVGVK+DRP + ++ E+ A Sbjct: 238 DVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 119 bits (299), Expect = 3e-27 Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 1/84 (1%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KE 289 CDLKELV KFIPE IGK+IEKAT I+PLQNV++RKVKILKAPKFDL KLMEVHGDY E Sbjct: 179 CDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAE 238 Query: 288 DVGVKLDRPDGDEVIPGAEEVAAA 217 DVGVK+DRP DEV+ E+ A Sbjct: 239 DVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 99.4 bits (246), Expect = 4e-21 Identities = 49/66 (74%), Positives = 57/66 (86%), Gaps = 1/66 (1%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSS-IFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKE 289 CDLKELV KFIPEVIGKEI++ S I+PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E Sbjct: 175 CDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNE 234 Query: 288 DVGVKL 271 +VG K+ Sbjct: 235 EVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 92.8 bits (229), Expect = 4e-19 Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 9/80 (11%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGT 238 Query: 297 ----YKEDVGVKLDRPDGDE 250 +D G K++R DG E Sbjct: 239 AAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 92.4 bits (228), Expect = 5e-19 Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 9/80 (11%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGG 238 Query: 297 ----YKEDVGVKLDRPDGDE 250 +D G K++R DG E Sbjct: 239 AAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 92.0 bits (227), Expect = 7e-19 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAG 238 Query: 297 --YKEDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KPAGDETGAKVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 92.0 bits (227), Expect = 7e-19 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTG 238 Query: 297 --YKEDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KPAGDETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 92.0 bits (227), Expect = 7e-19 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSG 238 Query: 297 --YKEDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KPSGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 92.0 bits (227), Expect = 7e-19 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAG 238 Query: 297 --YKEDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KPSGDEAGAKVERADGYE 256
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 91.7 bits (226), Expect = 9e-19 Identities = 45/65 (69%), Positives = 54/65 (83%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKED 286 C ++ELV K IPEVIG+EIE+AT SIFPLQNV VRKVKILKAPK D KL+E+HG+ +D Sbjct: 178 CSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQD 236 Query: 285 VGVKL 271 VG K+ Sbjct: 237 VGTKV 241
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 91.7 bits (226), Expect = 9e-19 Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 10/81 (12%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTS 238 Query: 297 -----YKEDVGVKLDRPDGDE 250 + D G K++R DG E Sbjct: 239 AAAKPAEGDTGAKVERADGYE 259
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 90.9 bits (224), Expect = 1e-18 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK--- 292 DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 176 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSG 235 Query: 291 ----EDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 236 KATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 90.9 bits (224), Expect = 1e-18 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK--- 292 DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSG 238 Query: 291 ----EDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 90.9 bits (224), Expect = 1e-18 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK--- 292 DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSG 238 Query: 291 ----EDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 90.9 bits (224), Expect = 1e-18 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK--- 292 DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSG 238 Query: 291 ----EDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KATGDETGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 90.5 bits (223), Expect = 2e-18 Identities = 44/65 (67%), Positives = 55/65 (84%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKED 286 C +KELV K IPEVIG+ IEKAT++I+PLQNV+VRKVKILKAPK D KL+E+HG+ +D Sbjct: 178 CSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQD 236 Query: 285 VGVKL 271 VG K+ Sbjct: 237 VGSKV 241
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 90.5 bits (223), Expect = 2e-18 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSG 238 Query: 297 --YKEDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 90.5 bits (223), Expect = 2e-18 Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSG 238 Query: 297 --YKEDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KAAGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 89.7 bits (221), Expect = 3e-18 Identities = 44/78 (56%), Positives = 59/78 (75%), Gaps = 7/78 (8%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK--- 292 DLKE+VNK IP+ IGK++EKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ Sbjct: 179 DLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSG 238 Query: 291 ----EDVGVKLDRPDGDE 250 ++ G K++R DG E Sbjct: 239 KATGDETGAKVERADGYE 256
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 87.0 bits (214), Expect = 2e-17 Identities = 43/74 (58%), Positives = 55/74 (74%), Gaps = 2/74 (2%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YK 292 CDLKE+V+K IP+ IGK+IEK S ++PLQ VY+RKVKI+K PK DLG+L ++HGD Sbjct: 176 CDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITV 235 Query: 291 EDVGVKLDRPDGDE 250 G K+DRPD E Sbjct: 236 GADGEKVDRPDDYE 249
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 83.2 bits (204), Expect = 3e-16 Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 8/79 (10%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 D+KE+VNK IP+ IGK+IEK+ I+PL +V + KVK+LK PKFD+GKLME+HG+ Sbjct: 179 DMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTT 238 Query: 297 ---YKEDVGVKLDRPDGDE 250 + G K+DR DG E Sbjct: 239 SKGVTSEGGEKVDRVDGYE 257
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 82.8 bits (203), Expect = 4e-16 Identities = 41/75 (54%), Positives = 55/75 (73%), Gaps = 1/75 (1%) Frame = -3 Query: 465 CDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKE 289 C L +L +K IPEVIG+EIEK+T +IFPLQNV++RKVK+LK PKFD G L+ +HG+ E Sbjct: 178 CTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTE 237 Query: 288 DVGVKLDRPDGDEVI 244 + G K+ D V+ Sbjct: 238 EKGKKVSSGFKDVVL 252
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 78.6 bits (192), Expect = 7e-15 Identities = 36/54 (66%), Positives = 44/54 (81%) Frame = -3 Query: 459 LKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 298 L +L +K IPEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 180 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 78.6 bits (192), Expect = 7e-15 Identities = 36/54 (66%), Positives = 44/54 (81%) Frame = -3 Query: 459 LKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 298 L +L +K IPEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 180 LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 77.0 bits (188), Expect = 2e-14 Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 8/79 (10%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----- 298 DLK+LVNK + I K+IEK+ I+PL +VY+RKVK+LK P+FD+ KL+E+HGD Sbjct: 182 DLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKS 241 Query: 297 ---YKEDVGVKLDRPDGDE 250 G +DRP+G E Sbjct: 242 VEAVVSSEGAVIDRPEGYE 260
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 73.9 bits (180), Expect = 2e-13 Identities = 32/55 (58%), Positives = 43/55 (78%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 298 DLK +V K +P+ I K+IEKA ++PL +VY+RKVK+LK P+FDL LME+HGD Sbjct: 182 DLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 32.7 bits (73), Expect = 0.47 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 334 + K+ V + + I EI K I+PL+ +RK+K+L+ P+ Sbjct: 153 NFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 32.0 bits (71), Expect = 0.80 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 423 IGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLME 310 + EI +A I+PL+ + K K+LK P+ +LGK +E Sbjct: 165 LANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 32.0 bits (71), Expect = 0.80 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 334 D + V I + +I + I+PL+ V + K K+LKAPK Sbjct: 154 DFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 334 + K+ V + + I EI K I+PL+ +RK+K+L P+ Sbjct: 154 NFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -3 Query: 462 DLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 334 + K+ V + + I EI K I+PL+ +RK+K+L P+ Sbjct: 155 NFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -3 Query: 465 CDLKELVNKFIP----EVIGKEIEKATSSIFPLQNVYVRKVKILKAP 337 CD E + + + E I ++I++A I+P++ +RK ++L+ P Sbjct: 145 CDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -3 Query: 453 ELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 337 E V + + +I + I+PL+ V V K K+LKAP Sbjct: 154 EFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -3 Query: 426 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 250 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 249 VIPGAEEV 226 + PG ++ Sbjct: 847 LPPGVNQL 854
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -3 Query: 426 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 250 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 249 VIPGAEEV 226 + PG ++ Sbjct: 867 LPPGVNQL 874
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 423 IGKEIEKATSSIFPLQNVYVRKVKILKAP 337 I EI K I+P++ VRK+K+L P Sbjct: 170 IASEIAKEARKIYPIKRAEVRKIKVLAEP 198
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -3 Query: 420 GKEIEKATSSIFPLQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 268 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 267 RPDGDEVIPGAEE 229 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +1 Query: 241 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLADVHVLE 381 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230
>SYT_STRPN (Q97PI4) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 647 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = -3 Query: 450 LVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271 ++N P+ +E E ++ Q++ K A KF+ GKL++ ED +++ Sbjct: 1 MINITFPDGAVREFESGVTTFEIAQSISNSLAKKALAGKFN-GKLIDTTRAITEDGSIEI 59 Query: 270 DRPDGDEVIPGAEEVAA 220 PD ++ +P AA Sbjct: 60 VTPDHEDALPILRHSAA 76
>YR297_MIMIV (Q5UPY3) Hypothetical protein R297| Length = 168 Score = 28.5 bits (62), Expect = 8.9 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +3 Query: 99 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 206 ++Y+ NQP++L T+ P ++ + + + N +FY Sbjct: 80 KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,650,063 Number of Sequences: 219361 Number of extensions: 913978 Number of successful extensions: 2365 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 2294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2361 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
