Clone Name | rbart41g12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_184413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 157 bits (79), Expect = 4e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271 ||||||||||||||| ||||||||||||||| ||||| || | || ||||| ||||| Sbjct: 995 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 936 Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331 | |||||||||||| || | ||||||||| |||||||||||| | |||||||||| Sbjct: 935 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 876 Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391 || |||||||| ||| |||||| | ||||||||||||||||| |||||||| |||||| Sbjct: 875 agcgccggcggcagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 816 Query: 392 accgggtggtccctggtcgcccc 414 ||||||||||||||||||||||| Sbjct: 815 accgggtggtccctggtcgcccc 793
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 157 bits (79), Expect = 4e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271 ||||||||||||||| ||||||||||||||| ||||| || | || ||||| ||||| Sbjct: 2896853 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 2896794 Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331 | |||||||||||| || | ||||||||| |||||||||||| | |||||||||| Sbjct: 2896793 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 2896734 Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391 || |||||||| ||| |||||| | ||||||||||||||||| |||||||| |||||| Sbjct: 2896733 agcgccggcggcagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 2896674 Query: 392 accgggtggtccctggtcgcccc 414 ||||||||||||||||||||||| Sbjct: 2896673 accgggtggtccctggtcgcccc 2896651 Score = 139 bits (70), Expect = 9e-30 Identities = 181/218 (83%) Strand = Plus / Plus Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271 ||||||||| |||||| ||||||||||||| | ||||| || | || ||||| ||||| Sbjct: 2953551 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 2953610 Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331 | |||||||||||| | | ||||||||| |||||||||||| | |||||||||| Sbjct: 2953611 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 2953670 Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391 || |||| ||||||| |||||| | ||||||||||||||||| |||||||| |||||| Sbjct: 2953671 agcgccgccgggagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 2953730 Query: 392 accgggtggtccctggtcgccccgaccggaagcgacat 429 |||||||||||||||||||| || ||||| | |||||| Sbjct: 2953731 accgggtggtccctggtcgcgcccaccggcaacgacat 2953768 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Plus Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383 |||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||||||| Sbjct: 2956599 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 2956658 Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428 | |||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 2956659 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 2956703
>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0030H07 Length = 168253 Score = 157 bits (79), Expect = 4e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271 ||||||||||||||| ||||||||||||||| ||||| || | || ||||| ||||| Sbjct: 103851 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 103792 Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331 | |||||||||||| || | ||||||||| |||||||||||| | |||||||||| Sbjct: 103791 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 103732 Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391 || |||||||| ||| |||||| | ||||||||||||||||| |||||||| |||||| Sbjct: 103731 agcgccggcggcagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 103672 Query: 392 accgggtggtccctggtcgcccc 414 ||||||||||||||||||||||| Sbjct: 103671 accgggtggtccctggtcgcccc 103649 Score = 139 bits (70), Expect = 9e-30 Identities = 181/218 (83%) Strand = Plus / Plus Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271 ||||||||| |||||| ||||||||||||| | ||||| || | || ||||| ||||| Sbjct: 160549 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 160608 Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331 | |||||||||||| | | ||||||||| |||||||||||| | |||||||||| Sbjct: 160609 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 160668 Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391 || |||| ||||||| |||||| | ||||||||||||||||| |||||||| |||||| Sbjct: 160669 agcgccgccgggagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 160728 Query: 392 accgggtggtccctggtcgccccgaccggaagcgacat 429 |||||||||||||||||||| || ||||| | |||||| Sbjct: 160729 accgggtggtccctggtcgcgcccaccggcaacgacat 160766 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Plus Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383 |||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||||||| Sbjct: 163597 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 163656 Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428 | |||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 163657 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 163701
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0011G08 Length = 139490 Score = 139 bits (70), Expect = 9e-30 Identities = 181/218 (83%) Strand = Plus / Plus Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271 ||||||||| |||||| ||||||||||||| | ||||| || | || ||||| ||||| Sbjct: 35068 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 35127 Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331 | |||||||||||| | | ||||||||| |||||||||||| | |||||||||| Sbjct: 35128 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 35187 Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391 || |||| ||||||| |||||| | ||||||||||||||||| |||||||| |||||| Sbjct: 35188 agcgccgccgggagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 35247 Query: 392 accgggtggtccctggtcgccccgaccggaagcgacat 429 |||||||||||||||||||| || ||||| | |||||| Sbjct: 35248 accgggtggtccctggtcgcgcccaccggcaacgacat 35285 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Plus Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383 |||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||||||| Sbjct: 38116 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 38175 Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428 | |||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 38176 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 38220
>ref|NM_184424.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1232 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383 |||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||||||| Sbjct: 843 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 784 Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428 | |||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 783 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 739
>dbj|AK073659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033053C20, full insert sequence Length = 1231 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383 |||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||||||| Sbjct: 842 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 783 Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428 | |||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 782 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 738
>dbj|AK060305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A09, full insert sequence Length = 1274 Score = 97.6 bits (49), Expect = 3e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383 |||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||||||| Sbjct: 841 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 782 Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428 | |||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 781 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 737
>ref|NM_186422.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1189 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 884 acgcggtcgcggagcacgtc 865
>ref|XM_506174.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.153 mRNA Length = 1772 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 884 acgcggtcgcggagcacgtc 865
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 3377892 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 3377941 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 3377760 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 3377819 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 3377820 acgcggtcgcggagcacgtc 3377839 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||| ||||| |||||||| ||||||| |||||||||||| Sbjct: 3383946 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 3383987 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 213 agaagccatgctgctgtccctcgaactc 240 |||||||||||||||| ||||||||||| Sbjct: 3392613 agaagccatgctgctgcccctcgaactc 3392640
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 17712 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 17761 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 17580 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 17639 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 17640 acgcggtcgcggagcacgtc 17659 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||| ||||| |||||||| ||||||| |||||||||||| Sbjct: 23766 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 23807 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 213 agaagccatgctgctgtccctcgaactc 240 |||||||||||||||| ||||||||||| Sbjct: 32433 agaagccatgctgctgcccctcgaactc 32460
>dbj|AK106274.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G12, full insert sequence Length = 1772 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 884 acgcggtcgcggagcacgtc 865
>dbj|AK105789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H03, full insert sequence Length = 1189 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 884 acgcggtcgcggagcacgtc 865
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414 |||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 187585 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 187634 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292 ||||||| ||| |||||||||| ||||||||| ||| |||||||||||||| || Sbjct: 187453 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 187512 Query: 293 acgcggtcacggagcacgtc 312 |||||||| ||||||||||| Sbjct: 187513 acgcggtcgcggagcacgtc 187532
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405 ||||||||||||||||||||| ||||| | |||||||||||| Sbjct: 17690 ggggctctccggcccgaacgggttcgcgaacgggtggtccct 17731
>ref|XM_469930.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1029 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||||||||||||||||| || |||| |||||||||||| Sbjct: 764 gggctctccggcccgaacgggttggccagcgggtggtccct 724
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||||||||||||||||| || |||| |||||||||||| Sbjct: 32548365 gggctctccggcccgaacgggttggccagcgggtggtccct 32548325
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||||||||||||||||| || |||| |||||||||||| Sbjct: 32638875 gggctctccggcccgaacgggttggccagcgggtggtccct 32638835
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||||||||||||||||| || |||| |||||||||||| Sbjct: 81814 gggctctccggcccgaacgggttggccagcgggtggtccct 81774
>dbj|AK107136.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C10, full insert sequence Length = 1328 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||||||||||||||||| || |||| |||||||||||| Sbjct: 852 gggctctccggcccgaacgggttggccagcgggtggtccct 812
>ref|NM_186423.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1365 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||| ||||| |||||||| ||||||| |||||||||||| Sbjct: 879 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 838
>dbj|AK110810.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F04, full insert sequence Length = 1366 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405 |||||| ||||| |||||||| ||||||| |||||||||||| Sbjct: 879 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 838
>ref|NM_186425.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1559 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 213 agaagccatgctgctgtccctcgaactc 240 |||||||||||||||| ||||||||||| Sbjct: 1099 agaagccatgctgctgcccctcgaactc 1072
>dbj|AK106266.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G01, full insert sequence Length = 1559 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 213 agaagccatgctgctgtccctcgaactc 240 |||||||||||||||| ||||||||||| Sbjct: 1099 agaagccatgctgctgcccctcgaactc 1072
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 cctcgaactcgacaagctcga 251 ||||||||||||||||||||| Sbjct: 516088 cctcgaactcgacaagctcga 516068
>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete sequence Length = 211243 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 ggctgaaggacagagaagcca 220 ||||||||||||||||||||| Sbjct: 70016 ggctgaaggacagagaagcca 70036
>emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2591A6 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196431 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 tccacaggcagggacacatct 472 ||||||||||||||||||||| Sbjct: 36949 tccacaggcagggacacatct 36929
>gb|AY391411.1| Danio rerio BUB3 budding uninhibited by benzimidazoles 3-like protein (BUB3) mRNA, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 201 gctgaaggacagagaagccatgctgctg 228 ||||||||||||||| || ||||||||| Sbjct: 856 gctgaaggacagagaggcgatgctgctg 829
>gb|DQ464414.1| Uncultured Methanobacteriales archaeon clone A82 16S ribosomal RNA gene, partial sequence Length = 771 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ttcgccaccgggtggtccct 405 |||||||||||||||||||| Sbjct: 611 ttcgccaccgggtggtccct 592
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 223 ctgctgtccctcgaactcgacaagctcg 250 |||||||| | ||||||||||||||||| Sbjct: 4233117 ctgctgtcgcgcgaactcgacaagctcg 4233144
>dbj|AB166730.2| Bombyx mori BRC gene for broad-complex Z2-isoform, broad-complex Z4-isoform, broad-complex Z1-isoform, complete cds Length = 25958 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 acacagtaatatcacgagat 99 |||||||||||||||||||| Sbjct: 20776 acacagtaatatcacgagat 20757
>ref|NM_205709.1| Danio rerio BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) (bub3), mRNA Length = 1182 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 201 gctgaaggacagagaagccatgctgctg 228 ||||||||||||||| || ||||||||| Sbjct: 856 gctgaaggacagagaggcgatgctgctg 829
>dbj|AB113089.1| Bombyx mori BmBR-C gene for Broad-Complex isoforms, complete cds, alternative splicing Length = 9293 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 acacagtaatatcacgagat 99 |||||||||||||||||||| Sbjct: 8460 acacagtaatatcacgagat 8441
>gb|AF025454.1| Caenorhabditis elegans cosmid F34D6, complete sequence Length = 23656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tcagaagttcagaacattga 51 |||||||||||||||||||| Sbjct: 9478 tcagaagttcagaacattga 9497
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgacaagctcgacgcctttc 259 |||||||||||||||||||| Sbjct: 666372 cgacaagctcgacgcctttc 666391
>gb|BC083205.1| Danio rerio BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast), mRNA (cDNA clone MGC:101571 IMAGE:7222743), complete cds Length = 1252 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 201 gctgaaggacagagaagccatgctgctg 228 ||||||||||||||| || ||||||||| Sbjct: 920 gctgaaggacagagaggcgatgctgctg 893 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,026,385 Number of Sequences: 3902068 Number of extensions: 3026385 Number of successful extensions: 56515 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56199 Number of HSP's gapped (non-prelim): 303 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)