ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184413.1| Oryza sativa (japonica cultivar-group), mRNA 157 4e-35
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
3dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
4dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
5ref|NM_184424.2| Oryza sativa (japonica cultivar-group), mRNA 98 3e-17
6dbj|AK073659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
7dbj|AK060305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
8ref|NM_186422.2| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
9ref|XM_506174.1| PREDICTED Oryza sativa (japonica cultivar-group... 76 1e-10
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
11dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
12dbj|AK106274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
13dbj|AK105789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
14dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
15gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 60 7e-06
16ref|XM_469930.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
19gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 58 3e-05
20dbj|AK107136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
21ref|NM_186423.2| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
22dbj|AK110810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
23ref|NM_186425.2| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
24dbj|AK106266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
25gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 42 1.6
26gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosom... 42 1.6
27emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2... 42 1.6
28gb|AY391411.1| Danio rerio BUB3 budding uninhibited by benzimida... 40 6.4
29gb|DQ464414.1| Uncultured Methanobacteriales archaeon clone A82 ... 40 6.4
30emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
31dbj|AB166730.2| Bombyx mori BRC gene for broad-complex Z2-isofor... 40 6.4
32ref|NM_205709.1| Danio rerio BUB3 budding uninhibited by benzimi... 40 6.4
33dbj|AB113089.1| Bombyx mori BmBR-C gene for Broad-Complex isofor... 40 6.4
34gb|AF025454.1| Caenorhabditis elegans cosmid F34D6, complete seq... 40 6.4
35gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.4
36gb|BC083205.1| Danio rerio BUB3 budding uninhibited by benzimida... 40 6.4

>ref|NM_184413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1086

 Score =  157 bits (79), Expect = 4e-35
 Identities = 172/203 (84%)
 Strand = Plus / Minus

                                                                       
Query: 212 gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271
           |||||||||||||||  ||||||||||||||| ||||| ||  | || ||||| ||||| 
Sbjct: 995 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 936

                                                                       
Query: 272 agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331
           | |||||||||||| || | |||||||||   ||||||||||||    | ||||||||||
Sbjct: 935 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 876

                                                                       
Query: 332 agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391
           || |||||||| ||| ||||||   | ||||||||||||||||| |||||||| ||||||
Sbjct: 875 agcgccggcggcagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 816

                                  
Query: 392 accgggtggtccctggtcgcccc 414
           |||||||||||||||||||||||
Sbjct: 815 accgggtggtccctggtcgcccc 793



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 4e-35
 Identities = 172/203 (84%)
 Strand = Plus / Minus

                                                                           
Query: 212     gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271
               |||||||||||||||  ||||||||||||||| ||||| ||  | || ||||| ||||| 
Sbjct: 2896853 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 2896794

                                                                           
Query: 272     agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331
               | |||||||||||| || | |||||||||   ||||||||||||    | ||||||||||
Sbjct: 2896793 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 2896734

                                                                           
Query: 332     agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391
               || |||||||| ||| ||||||   | ||||||||||||||||| |||||||| ||||||
Sbjct: 2896733 agcgccggcggcagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 2896674

                                      
Query: 392     accgggtggtccctggtcgcccc 414
               |||||||||||||||||||||||
Sbjct: 2896673 accgggtggtccctggtcgcccc 2896651



 Score =  139 bits (70), Expect = 9e-30
 Identities = 181/218 (83%)
 Strand = Plus / Plus

                                                                           
Query: 212     gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271
               ||||||||| |||||| ||||||||||||| | ||||| ||  | || ||||| ||||| 
Sbjct: 2953551 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 2953610

                                                                           
Query: 272     agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331
               | ||||||||||||  | | |||||||||   ||||||||||||    | ||||||||||
Sbjct: 2953611 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 2953670

                                                                           
Query: 332     agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391
               || |||| ||||||| ||||||   | ||||||||||||||||| |||||||| ||||||
Sbjct: 2953671 agcgccgccgggagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 2953730

                                                     
Query: 392     accgggtggtccctggtcgccccgaccggaagcgacat 429
               |||||||||||||||||||| || ||||| | ||||||
Sbjct: 2953731 accgggtggtccctggtcgcgcccaccggcaacgacat 2953768



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Plus

                                                                           
Query: 324     ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383
               ||||||||||  ||||||||| | ||||||  || ||||||||||| ||||| |||||||
Sbjct: 2956599 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 2956658

                                                            
Query: 384     gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428
               | |||||||||||||||||||| ||||||||  |||| |||||||
Sbjct: 2956659 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 2956703



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>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0030H07
          Length = 168253

 Score =  157 bits (79), Expect = 4e-35
 Identities = 172/203 (84%)
 Strand = Plus / Minus

                                                                          
Query: 212    gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271
              |||||||||||||||  ||||||||||||||| ||||| ||  | || ||||| ||||| 
Sbjct: 103851 gagaagccatgctgcgctccctcgaactcgacgagctccaccgccttgcccatctccttc 103792

                                                                          
Query: 272    agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331
              | |||||||||||| || | |||||||||   ||||||||||||    | ||||||||||
Sbjct: 103791 aacctcgccgcgtagcccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 103732

                                                                          
Query: 332    agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391
              || |||||||| ||| ||||||   | ||||||||||||||||| |||||||| ||||||
Sbjct: 103731 agcgccggcggcagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 103672

                                     
Query: 392    accgggtggtccctggtcgcccc 414
              |||||||||||||||||||||||
Sbjct: 103671 accgggtggtccctggtcgcccc 103649



 Score =  139 bits (70), Expect = 9e-30
 Identities = 181/218 (83%)
 Strand = Plus / Plus

                                                                          
Query: 212    gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271
              ||||||||| |||||| ||||||||||||| | ||||| ||  | || ||||| ||||| 
Sbjct: 160549 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 160608

                                                                          
Query: 272    agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331
              | ||||||||||||  | | |||||||||   ||||||||||||    | ||||||||||
Sbjct: 160609 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 160668

                                                                          
Query: 332    agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391
              || |||| ||||||| ||||||   | ||||||||||||||||| |||||||| ||||||
Sbjct: 160669 agcgccgccgggagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 160728

                                                    
Query: 392    accgggtggtccctggtcgccccgaccggaagcgacat 429
              |||||||||||||||||||| || ||||| | ||||||
Sbjct: 160729 accgggtggtccctggtcgcgcccaccggcaacgacat 160766



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Plus

                                                                          
Query: 324    ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383
              ||||||||||  ||||||||| | ||||||  || ||||||||||| ||||| |||||||
Sbjct: 163597 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 163656

                                                           
Query: 384    gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428
              | |||||||||||||||||||| ||||||||  |||| |||||||
Sbjct: 163657 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 163701



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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0011G08
          Length = 139490

 Score =  139 bits (70), Expect = 9e-30
 Identities = 181/218 (83%)
 Strand = Plus / Plus

                                                                         
Query: 212   gagaagccatgctgctgtccctcgaactcgacaagctcgacgcctttccccatgtccttg 271
             ||||||||| |||||| ||||||||||||| | ||||| ||  | || ||||| ||||| 
Sbjct: 35068 gagaagccaagctgctctccctcgaactcggcgagctccaccgccttgcccatctccttc 35127

                                                                         
Query: 272   agcctcgccgcgtacccgagcacgcggtcacggagcacgtcgcccaacggcgccacgacg 331
             | ||||||||||||  | | |||||||||   ||||||||||||    | ||||||||||
Sbjct: 35128 aacctcgccgcgtagtccaccacgcggtcgtagagcacgtcgccgccggacgccacgacg 35187

                                                                         
Query: 332   agagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacggattcgcc 391
             || |||| ||||||| ||||||   | ||||||||||||||||| |||||||| ||||||
Sbjct: 35188 agcgccgccgggagcgccaccgcctccaggctggggctctccgggccgaacgggttcgcc 35247

                                                   
Query: 392   accgggtggtccctggtcgccccgaccggaagcgacat 429
             |||||||||||||||||||| || ||||| | ||||||
Sbjct: 35248 accgggtggtccctggtcgcgcccaccggcaacgacat 35285



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Plus

                                                                         
Query: 324   ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383
             ||||||||||  ||||||||| | ||||||  || ||||||||||| ||||| |||||||
Sbjct: 38116 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 38175

                                                          
Query: 384   gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428
             | |||||||||||||||||||| ||||||||  |||| |||||||
Sbjct: 38176 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 38220



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>ref|NM_184424.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1232

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383
           ||||||||||  ||||||||| | ||||||  || ||||||||||| ||||| |||||||
Sbjct: 843 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 784

                                                        
Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428
           | |||||||||||||||||||| ||||||||  |||| |||||||
Sbjct: 783 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 739



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>dbj|AK073659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033053C20, full
           insert sequence
          Length = 1231

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383
           ||||||||||  ||||||||| | ||||||  || ||||||||||| ||||| |||||||
Sbjct: 842 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 783

                                                        
Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428
           | |||||||||||||||||||| ||||||||  |||| |||||||
Sbjct: 782 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 738



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>dbj|AK060305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A09, full
           insert sequence
          Length = 1274

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324 ccacgacgagagccggcgggagctccaccggtgcgaggctggggctctccggcccgaacg 383
           ||||||||||  ||||||||| | ||||||  || ||||||||||| ||||| |||||||
Sbjct: 841 ccacgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacg 782

                                                        
Query: 384 gattcgccaccgggtggtccctggtcgccccgaccggaagcgaca 428
           | |||||||||||||||||||| ||||||||  |||| |||||||
Sbjct: 781 ggttcgccaccgggtggtccctcgtcgccccctccggcagcgaca 737



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>ref|NM_186422.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1189

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
           |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
           ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885

                               
Query: 293 acgcggtcacggagcacgtc 312
           |||||||| |||||||||||
Sbjct: 884 acgcggtcgcggagcacgtc 865



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>ref|XM_506174.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.153
           mRNA
          Length = 1772

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
           |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
           ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885

                               
Query: 293 acgcggtcacggagcacgtc 312
           |||||||| |||||||||||
Sbjct: 884 acgcggtcgcggagcacgtc 865



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                                 
Query: 365     gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
               |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 3377892 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 3377941



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                           
Query: 233     tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
               ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 3377760 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 3377819

                                   
Query: 293     acgcggtcacggagcacgtc 312
               |||||||| |||||||||||
Sbjct: 3377820 acgcggtcgcggagcacgtc 3377839



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 364     ggggctctccggcccgaacggattcgccaccgggtggtccct 405
               |||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct: 3383946 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 3383987



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 213     agaagccatgctgctgtccctcgaactc 240
               |||||||||||||||| |||||||||||
Sbjct: 3392613 agaagccatgctgctgcccctcgaactc 3392640



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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                               
Query: 365   gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
             |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 17712 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 17761



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 233   tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
             ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 17580 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 17639

                                 
Query: 293   acgcggtcacggagcacgtc 312
             |||||||| |||||||||||
Sbjct: 17640 acgcggtcgcggagcacgtc 17659



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 364   ggggctctccggcccgaacggattcgccaccgggtggtccct 405
             |||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct: 23766 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 23807



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 213   agaagccatgctgctgtccctcgaactc 240
             |||||||||||||||| |||||||||||
Sbjct: 32433 agaagccatgctgctgcccctcgaactc 32460



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>dbj|AK106274.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G12, full
           insert sequence
          Length = 1772

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
           |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
           ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885

                               
Query: 293 acgcggtcacggagcacgtc 312
           |||||||| |||||||||||
Sbjct: 884 acgcggtcgcggagcacgtc 865



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>dbj|AK105789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H03, full
           insert sequence
          Length = 1189

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
           |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 812 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 763



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 233 tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
           ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 944 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 885

                               
Query: 293 acgcggtcacggagcacgtc 312
           |||||||| |||||||||||
Sbjct: 884 acgcggtcgcggagcacgtc 865



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                                
Query: 365    gggctctccggcccgaacggattcgccaccgggtggtccctggtcgcccc 414
              |||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 187585 gggctctccggcccgaacgggttcgccgccgggtggtccctcgtcgcccc 187634



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                          
Query: 233    tcgaactcgacaagctcgacgcctttccccatgtccttgagcctcgccgcgtacccgagc 292
              ||||||| ||| ||||||||||  ||||||||| |||  ||||||||||||||  ||   
Sbjct: 187453 tcgaacttgacgagctcgacgcgcttccccatggcctgcagcctcgccgcgtagtcggcg 187512

                                  
Query: 293    acgcggtcacggagcacgtc 312
              |||||||| |||||||||||
Sbjct: 187513 acgcggtcgcggagcacgtc 187532



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>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 364   ggggctctccggcccgaacggattcgccaccgggtggtccct 405
             ||||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 17690 ggggctctccggcccgaacgggttcgcgaacgggtggtccct 17731



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>ref|XM_469930.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1029

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405
           |||||||||||||||||||| || |||| ||||||||||||
Sbjct: 764 gggctctccggcccgaacgggttggccagcgggtggtccct 724



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 365      gggctctccggcccgaacggattcgccaccgggtggtccct 405
                |||||||||||||||||||| || |||| ||||||||||||
Sbjct: 32548365 gggctctccggcccgaacgggttggccagcgggtggtccct 32548325



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 365      gggctctccggcccgaacggattcgccaccgggtggtccct 405
                |||||||||||||||||||| || |||| ||||||||||||
Sbjct: 32638875 gggctctccggcccgaacgggttggccagcgggtggtccct 32638835



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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 365   gggctctccggcccgaacggattcgccaccgggtggtccct 405
             |||||||||||||||||||| || |||| ||||||||||||
Sbjct: 81814 gggctctccggcccgaacgggttggccagcgggtggtccct 81774



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>dbj|AK107136.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C10, full
           insert sequence
          Length = 1328

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 365 gggctctccggcccgaacggattcgccaccgggtggtccct 405
           |||||||||||||||||||| || |||| ||||||||||||
Sbjct: 852 gggctctccggcccgaacgggttggccagcgggtggtccct 812



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>ref|NM_186423.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1365

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405
           |||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct: 879 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 838



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>dbj|AK110810.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F04, full
           insert sequence
          Length = 1366

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 364 ggggctctccggcccgaacggattcgccaccgggtggtccct 405
           |||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct: 879 ggggctgtccgggccgaacgggttcgccatcgggtggtccct 838



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>ref|NM_186425.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1559

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 213  agaagccatgctgctgtccctcgaactc 240
            |||||||||||||||| |||||||||||
Sbjct: 1099 agaagccatgctgctgcccctcgaactc 1072



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>dbj|AK106266.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G01, full
            insert sequence
          Length = 1559

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 213  agaagccatgctgctgtccctcgaactc 240
            |||||||||||||||| |||||||||||
Sbjct: 1099 agaagccatgctgctgcccctcgaactc 1072



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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 231    cctcgaactcgacaagctcga 251
              |||||||||||||||||||||
Sbjct: 516088 cctcgaactcgacaagctcga 516068



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>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete
             sequence
          Length = 211243

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   ggctgaaggacagagaagcca 220
             |||||||||||||||||||||
Sbjct: 70016 ggctgaaggacagagaagcca 70036



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>emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2591A6 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 452   tccacaggcagggacacatct 472
             |||||||||||||||||||||
Sbjct: 36949 tccacaggcagggacacatct 36929



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>gb|AY391411.1| Danio rerio BUB3 budding uninhibited by benzimidazoles 3-like
           protein (BUB3) mRNA, complete cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 201 gctgaaggacagagaagccatgctgctg 228
           ||||||||||||||| || |||||||||
Sbjct: 856 gctgaaggacagagaggcgatgctgctg 829



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>gb|DQ464414.1| Uncultured Methanobacteriales archaeon clone A82 16S ribosomal RNA
           gene, partial sequence
          Length = 771

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 ttcgccaccgggtggtccct 405
           ||||||||||||||||||||
Sbjct: 611 ttcgccaccgggtggtccct 592



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 223     ctgctgtccctcgaactcgacaagctcg 250
               |||||||| | |||||||||||||||||
Sbjct: 4233117 ctgctgtcgcgcgaactcgacaagctcg 4233144



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>dbj|AB166730.2| Bombyx mori BRC gene for broad-complex Z2-isoform, broad-complex
             Z4-isoform, broad-complex Z1-isoform, complete cds
          Length = 25958

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    acacagtaatatcacgagat 99
             ||||||||||||||||||||
Sbjct: 20776 acacagtaatatcacgagat 20757



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>ref|NM_205709.1| Danio rerio BUB3 budding uninhibited by benzimidazoles 3 homolog
           (yeast) (bub3), mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 201 gctgaaggacagagaagccatgctgctg 228
           ||||||||||||||| || |||||||||
Sbjct: 856 gctgaaggacagagaggcgatgctgctg 829



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>dbj|AB113089.1| Bombyx mori BmBR-C gene for Broad-Complex isoforms, complete cds,
            alternative splicing
          Length = 9293

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   acacagtaatatcacgagat 99
            ||||||||||||||||||||
Sbjct: 8460 acacagtaatatcacgagat 8441



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>gb|AF025454.1| Caenorhabditis elegans cosmid F34D6, complete sequence
          Length = 23656

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   tcagaagttcagaacattga 51
            ||||||||||||||||||||
Sbjct: 9478 tcagaagttcagaacattga 9497



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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    cgacaagctcgacgcctttc 259
              ||||||||||||||||||||
Sbjct: 666372 cgacaagctcgacgcctttc 666391



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>gb|BC083205.1| Danio rerio BUB3 budding uninhibited by benzimidazoles 3 homolog
           (yeast), mRNA (cDNA clone MGC:101571 IMAGE:7222743),
           complete cds
          Length = 1252

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 201 gctgaaggacagagaagccatgctgctg 228
           ||||||||||||||| || |||||||||
Sbjct: 920 gctgaaggacagagaggcgatgctgctg 893


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,026,385
Number of Sequences: 3902068
Number of extensions: 3026385
Number of successful extensions: 56515
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56199
Number of HSP's gapped (non-prelim): 303
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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