ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P2SAF_ARATH (O82660) Photosystem II stability/assembly factor HC... 33 0.24
2CAKI_DROME (Q24210) Calcium/calmodulin-dependent protein kinase ... 31 1.5
3M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kina... 30 3.4
4PROP_CAVPO (Q64181) Properdin precursor (Factor P) 30 3.4
5M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kina... 29 4.4
6LAC1_CRYPA (Q03966) Laccase precursor (EC 1.10.3.2) (Benzenediol... 29 5.8
7PROP_MOUSE (P11680) Properdin precursor (Factor P) 28 7.6
8ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing... 28 9.9

>P2SAF_ARATH (O82660) Photosystem II stability/assembly factor HCF136,|
           chloroplast precursor
          Length = 403

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 369 WRPQ---VVRESQEQGDRCACR*GGNLWCNLHGGRIYRSRGTSVGDSLVSVAGQSR 211
           W+P    V R  Q  G R      G LW  + GG +Y S+GT + +    V  QSR
Sbjct: 280 WQPHNRAVARRIQNMGWRA----DGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSR 331



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>CAKI_DROME (Q24210) Calcium/calmodulin-dependent protein kinase (EC 2.7.11.17)|
           (CAKI) (Peripheral plasma membrane protein CaMGUK)
          Length = 898

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 288 LHGGRIYRSRGTSVGDSLVSVAGQSRQHRS 199
           +HGG I+R     VGD +  + GQ  QH+S
Sbjct: 524 MHGGMIHRQATLHVGDEIREINGQPVQHQS 553



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>M4K4_HUMAN (O95819) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1239

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 268 VDPSTMKVAPQISSSSAGTAVTLFLGFSYDLRPPRAFQ*KQPCGKGA 408
           +DP  ++++P     S+GT VT  +GFS D   P A + + P  KG+
Sbjct: 860 IDPRLLQISP-----SSGTTVTSVVGFSCDGMRPEAIR-QDPTRKGS 900



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>PROP_CAVPO (Q64181) Properdin precursor (Factor P)|
          Length = 470

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -1

Query: 222 GQSRQHRSCVGGGGVI*CNKARVLLSLVILWELFGCVSDHLYL*LFKFSQWIQDRPFSVE 43
           G   +HR C+G GG    NKA   L     W+L  C        +  +S W    P +V 
Sbjct: 95  GSQLRHRRCIGWGGQCSENKAPGTLE----WQLQACEEQQCCPEMGGWSNWEPWGPCTVT 150

Query: 42  CN 37
           C+
Sbjct: 151 CS 152



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>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 268 VDPSTMKVAPQISSSSAGTAVTLFLGFSYDLRPPRAFQ*KQPCGKGA 408
           +DP  ++++P     S+GT VT  +GFS D   P A + + P  KG+
Sbjct: 854 IDPRLLQISP-----SSGTTVTSVVGFSCDGLRPEAIR-QDPTRKGS 894



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>LAC1_CRYPA (Q03966) Laccase precursor (EC 1.10.3.2) (Benzenediol:oxygen|
           oxidoreductase) (Urishiol oxidase)
          Length = 591

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 428 GSCGKSLAPFPQGCFYWNALGGLKSYENPKNKVTAVPADEE 306
           G CGKS  P+P    ++N      S  +P NK  A PAD E
Sbjct: 330 GFCGKSNNPYPAAIIHYNG----ASNSHPTNKGVA-PADHE 365



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>PROP_MOUSE (P11680) Properdin precursor (Factor P)|
          Length = 464

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -1

Query: 240 SLVSVAGQSRQHRSCVGGGGVI*CNKARVLLSLVILWELFGCVSDHLYL*LFKFSQWIQD 61
           S+    G   +HR CVG GG    N A   L     W+L  C        +  +S+W   
Sbjct: 86  SVTCSEGSQLRHRRCVGRGGQCSENVAPGTLE----WQLQACEDQPCCPEMGGWSEWGPW 141

Query: 60  RPFSVECN 37
            P SV C+
Sbjct: 142 GPCSVTCS 149



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>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)|
           (Glutamine-dependent asparagine synthetase)
          Length = 583

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 401 FPQGCFYWNALGGLKSYENPKNKVTAVPADEEE 303
           FP G FY + LGG K + NP     +VP+   E
Sbjct: 173 FPPGHFYSSKLGGFKQWYNPPWFNESVPSTPYE 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,199,039
Number of Sequences: 219361
Number of extensions: 1109647
Number of successful extensions: 3059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3059
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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