Clone Name | rbart41g11 |
---|---|
Clone Library Name | barley_pub |
>gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, partial cds Length = 956 Score = 668 bits (337), Expect = 0.0 Identities = 410/431 (95%), Gaps = 5/431 (1%) Strand = Plus / Minus Query: 8 gaaagcttatttgctactacattataattgttacattcaactgaaaacggccggtcttga 67 |||||||||||||||||| ||||| |||||||||| |||||||| |||||||||||||| Sbjct: 943 gaaagcttatttgctactgcatta--attgttacatccaactgaagacggccggtcttga 886 Query: 68 atccactgcgagaatttgaagagctagagatacagatgatcagatacacaaccgaacagt 127 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 885 atccactgcgagaatttgaacagctagagatacagatgatcagatacacaaccgaacagt 826 Query: 128 tcccataagatcacaagagagagtagcacacgcgccttgttgcattatattacaccacca 187 || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 825 tcacataagatcacaagagag--tagcacacgcgccttgttgcattatattacaccacca 768 Query: 188 ccacctacacacgaccggtgttgcctgctttgcccagcgacggagacgagagaatctcct 247 ||| |||||||||| ||| |||||||||||||||||||||| |||||| ||||||||||| Sbjct: 767 ccatctacacacgaacggcgttgcctgctttgcccagcgacagagacgggagaatctcct 708 Query: 248 actgaagtgccgcgagaacggtagatccttccaccatgaaggttgcaccacagatttcct 307 ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 707 actgaagtgccgcgacaacggtagatccttccaccatgaaggt-gcaccacatatttcct 649 Query: 308 cctcatctgcaggcacagcggtcaccttgttcttgggattctcgtacgacttgaggcctc 367 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 648 cctcatctgcaggcacagcggtgaccttgttcttgggattctcgtacgacttgaggcctc 589 Query: 368 caagggcgttccagtagaagcagccttgcgggaaaggcgccagtgatttgccgcaagatc 427 |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 588 caagagcgttccagtagaagcaaccttgcgggaaaggcgccagtgacttgccgcaagatc 529 Query: 428 ctttcagcagg 438 ||||||||||| Sbjct: 528 ctttcagcagg 518
>gb|AY106409.1| Zea mays PCO130569 mRNA sequence Length = 1186 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Minus Query: 274 ccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcacc 333 ||||||||| ||||||||| || |||||||||||||| | |||||| || || ||||| Sbjct: 768 ccttccacctggaaggttgcgccgcagatttcctcctcgtttgcaggaacggcagtcact 709 Query: 334 ttgttcttgggattctcgtacgacttgaggcctccaagggcgttccagtagaagcagcct 393 |||||||||||||||||||| |||| | ||||||||||| || |||||||||| ||| Sbjct: 708 ttgttcttgggattctcgtagcacttcaatcctccaagggcattagagtagaagcaacct 649 Query: 394 tgcgggaaaggcgccagtgatttgccgcaagatcctttcagca 436 |||||||||||||| || || |||||||| || ||||| |||| Sbjct: 648 tgcgggaaaggcgcgagggacttgccgcaggagcctttgagca 606
>gb|BT016691.1| Zea mays clone Contig524 mRNA sequence Length = 1198 Score = 105 bits (53), Expect = 1e-19 Identities = 140/169 (82%) Strand = Plus / Plus Query: 268 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 327 |||| |||||||||| ||||| ||| || || ||||||||||| | |||||| || || Sbjct: 419 gtagctccttccacctggaagggtgcgccgcaaatttcctcctcgtttgcaggaacggca 478 Query: 328 gtcaccttgttcttgggattctcgtacgacttgaggcctccaagggcgttccagtagaag 387 ||||| |||||||||||||||||||| |||| | ||||||||||| || |||||||| Sbjct: 479 gtcactttgttcttgggattctcgtagcacttcaatcctccaagggcattagagtagaag 538 Query: 388 cagccttgcgggaaaggcgccagtgatttgccgcaagatcctttcagca 436 || || |||||||||||||| || || |||||||| || ||||| |||| Sbjct: 539 caaccctgcgggaaaggcgcgagggacttgccgcaggagcctttgagca 587
>gb|BT017472.1| Zea mays clone EL01N0408D08.c mRNA sequence Length = 1157 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 322 acagcggtcaccttgttcttgggattctcgtacgacttgaggcctccaagggcgttccag 381 |||||||| ||||||| |||||| |||||||| ||||||| ||||| |||||||| || Sbjct: 744 acagcggtgaccttgtgcttggggttctcgtagcacttgagccctccgagggcgttggag 685 Query: 382 tagaagcagccttgcgggaaaggcgccagtgatttgccgcaagatcctttcagca 436 |||||||||||||||||||| ||||| || || |||||||| || ||||| |||| Sbjct: 684 tagaagcagccttgcgggaacggcgcgagcgacttgccgcatgagcctttgagca 630
>dbj|AK119185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G04, full insert sequence Length = 1135 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Minus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828 Query: 344 gattctcgtacgacttgaggcctccaagggcgttccagtagaagcagccttgcgggaaag 403 | ||||| || |||| | ||||||||| || || | |||||||| ||||| ||||||| Sbjct: 827 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 768 Query: 404 gcgccagtgatttgccgcaagatcctttcagcagg 438 | || ||||| ||||| || |||||||| |||||| Sbjct: 767 gtgcaagtgacttgccacatgatcctttaagcagg 733
>dbj|AK104445.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B05, full insert sequence Length = 1124 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Minus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828 Query: 344 gattctcgtacgacttgaggcctccaagggcgttccagtagaagcagccttgcgggaaag 403 | ||||| || |||| | ||||||||| || || | |||||||| ||||| ||||||| Sbjct: 827 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 768 Query: 404 gcgccagtgatttgccgcaagatcctttcagcagg 438 | || ||||| ||||| || |||||||| |||||| Sbjct: 767 gtgcaagtgacttgccacatgatcctttaagcagg 733
>dbj|AK071762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109H06, full insert sequence Length = 1136 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Minus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 888 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 829 Query: 344 gattctcgtacgacttgaggcctccaagggcgttccagtagaagcagccttgcgggaaag 403 | ||||| || |||| | ||||||||| || || | |||||||| ||||| ||||||| Sbjct: 828 ggttctcatagcacttcaagcctccaagagcattggaatagaagcaaccttgtgggaaag 769 Query: 404 gcgccagtgatttgccgcaagatcctttcagcagg 438 | || ||||| ||||| || |||||||| |||||| Sbjct: 768 gtgcaagtgacttgccacatgatcctttaagcagg 734
>gb|AY104105.1| Zea mays PCO130572 mRNA sequence Length = 1280 Score = 101 bits (51), Expect = 2e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 322 acagcggtcaccttgttcttgggattctcgtacgacttgaggcctccaagggcgttccag 381 |||||||| ||||||| |||||| |||||||| ||||||| ||||| |||||||| || Sbjct: 734 acagcggtgaccttgtgcttggggttctcgtagcacttgagccctccgagggcgttggag 675 Query: 382 tagaagcagccttgcgggaaaggcgccagtgatttgccgcaagatcctttcagca 436 |||||||||||||||||||| ||||| || || |||||||| || ||||| |||| Sbjct: 674 tagaagcagccttgcgggaacggcgcgagcgacttgccgcatgagcctttgagca 620
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 2187475 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2187534 Query: 344 gattctcgtacgacttgaggcctccaag 371 | ||||| || |||| | ||||||||| Sbjct: 2187535 ggttctcatagcacttcaagcctccaag 2187562
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 2195256 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2195315 Query: 344 gattctcgtacgacttgaggcctccaag 371 | ||||| || |||| | ||||||||| Sbjct: 2195316 ggttctcatagcacttcaagcctccaag 2195343
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 84169 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 84228 Query: 344 gattctcgtacgacttgaggcctccaag 371 | ||||| || |||| | ||||||||| Sbjct: 84229 ggttctcatagcacttcaagcctccaag 84256
>dbj|AK104347.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F10, full insert sequence Length = 1101 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 268 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 327 ||||||||||||||| ||||||||||||| || ||||| || || | ||||| || ||| Sbjct: 857 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 798 Query: 328 gtcaccttgttcttgggattctc 350 |||||||||| ||| || ||||| Sbjct: 797 gtcaccttgtgctttgggttctc 775 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 382 tagaagcagccttgcgggaaaggcgccagtgatttgccgcaagatcctttcagcagg 438 |||||||||||||| |||||||| || || || ||||| || |||||||| |||||| Sbjct: 737 tagaagcagccttgtgggaaaggtgcaagagacttgccacacgatcctttaagcagg 681
>dbj|AK104102.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B06, full insert sequence Length = 1099 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 268 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 327 ||||||||||||||| ||||||||||||| || ||||| || || | ||||| || ||| Sbjct: 869 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 810 Query: 328 gtcaccttgttcttgggattctc 350 |||||||||| ||| || ||||| Sbjct: 809 gtcaccttgtgctttgggttctc 787 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 382 tagaagcagccttgcgggaaaggcgccagtgatttgccgcaagatcctttcagcagg 438 |||||||||||||| |||||||| || || || ||||| || |||||||| |||||| Sbjct: 749 tagaagcagccttgtgggaaaggtgcaagagacttgccacacgatcctttaagcagg 693
>dbj|AK067141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095J21, full insert sequence Length = 1130 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 268 gtagatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcg 327 ||||||||||||||| ||||||||||||| || ||||| || || | ||||| || ||| Sbjct: 870 gtagatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcg 811 Query: 328 gtcaccttgttcttgggattctc 350 |||||||||| ||| || ||||| Sbjct: 810 gtcaccttgtgctttgggttctc 788 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 382 tagaagcagccttgcgggaaaggcgccagtgatttgccgcaagatcctttcagcagg 438 |||||||||||||| |||||||| || || || ||||| || |||||||| |||||| Sbjct: 750 tagaagcagccttgtgggaaaggtgcaagagacttgccacacgatcctttaagcagg 694
>dbj|AB012110.1| Vigna radiata mRNA for ARG10, complete cds Length = 959 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Minus Query: 271 gatccttccaccatgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtc 330 ||||| |||||| | || |||||||| ||||||||||| || || ||||| || || || Sbjct: 726 gatccctccaccttaaaagttgcaccccagatttcctcttcttcggcaggtactgcagta 667 Query: 331 accttgttcttgggattctc 350 | ||||||||| |||||||| Sbjct: 666 atcttgttctttggattctc 647
>dbj|AP004960.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19B18, TM0139, complete sequence Length = 106089 Score = 46.1 bits (23), Expect = 0.095 Identities = 56/67 (83%) Strand = Plus / Minus Query: 284 tgaaggttgcaccacagatttcctcctcatctgcaggcacagcggtcaccttgttcttgg 343 ||||||||||||| || ||||||||||| || ||||| || || || | ||| ||||| | Sbjct: 71058 tgaaggttgcaccccaaatttcctcctcctcagcaggaactgcagtgatcttattcttag 70999 Query: 344 gattctc 350 ||||||| Sbjct: 70998 gattctc 70992
>emb|Z99976.1|MAZ99976 Musa acuminata mRNA for putative WALI7-related protein (clone pBAN ED141) Length = 750 Score = 46.1 bits (23), Expect = 0.095 Identities = 80/99 (80%) Strand = Plus / Plus Query: 255 tgccgcgagaacggtagatccttccaccatgaaggttgcaccacagatttcctcctcatc 314 |||||||| ||| | ||| ||||||||| |||| || |||||||| | ||| ||||| | Sbjct: 324 tgccgcgacaaccgcagacccttccaccttgaaagtggcaccacatacttcttcctcgtt 383 Query: 315 tgcaggcacagcggtcaccttgttcttgggattctcgta 353 | || | || ||||| ||||||| ||| ||||||||||| Sbjct: 384 ttcaagaacggcggtgaccttgtgcttaggattctcgta 422
>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence Length = 152451 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 81 atttgaagagctagagatacag 102 |||||||||||||||||||||| Sbjct: 75017 atttgaagagctagagatacag 75038
>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387, complete sequence Length = 96031 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 284 tgaaggttgcaccacagatttcctcctcat 313 ||||||||||||| ||||||||||| |||| Sbjct: 41219 tgaaggttgcaccccagatttcctcttcat 41248
>gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, complete sequence Length = 92959 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgaagagctagagatacaga 103 ||||||||||||||||||||| Sbjct: 59521 ttgaagagctagagatacaga 59541
>gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, complete sequence Length = 75539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgaagagctagagatacaga 103 ||||||||||||||||||||| Sbjct: 47729 ttgaagagctagagatacaga 47709
>gb|DQ107223.1| Astragalus brandegei clone 5 aluminum-induced protein-like gene, partial sequence Length = 327 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 160 aaggttgcgccccagatttcctcatcattagcaggcacagc 200
>gb|DQ107222.1| Astragalus brandegei clone 6 aluminum-induced protein-like gene, partial sequence Length = 320 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 152 aaggttgcgccccagatttcctcatcattagcaggcacagc 192
>gb|DQ107191.1| Astragalus falcatus clone 3 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107190.1| Astragalus falcatus clone 2 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107189.1| Astragalus falcatus clone 12 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107188.1| Astragalus falcatus clone 11 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107187.1| Astragalus falcatus clone 10 aluminum-induced protein-like gene, partial sequence Length = 331 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107178.1| Astragalus lonchocarpus clone 19 aluminum-induced protein-like gene, partial sequence Length = 338 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107177.1| Astragalus lonchocarpus clone 24 aluminum-induced protein-like gene, partial sequence Length = 335 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107176.1| Astragalus ceramicus clone 6 aluminum-induced protein-like gene, partial sequence Length = 334 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107175.1| Astragalus ceramicus clone 3 aluminum-induced protein-like gene, partial sequence Length = 334 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107174.1| Astragalus ceramicus clone 2 aluminum-induced protein-like gene, partial sequence Length = 335 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107171.1| Astragalus tetrapterus clone 21 aluminum-induced protein-like gene, partial sequence Length = 336 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107170.1| Astragalus tetrapterus clone 20 aluminum-induced protein-like gene, partial sequence Length = 337 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 286 aaggttgcaccacagatttcctcctcatctgcaggcacagc 326 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence Length = 179954 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 acattataattgttacattca 46 ||||||||||||||||||||| Sbjct: 88020 acattataattgttacattca 88000
>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete sequence Length = 190697 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 agagctagagatacagatga 106 |||||||||||||||||||| Sbjct: 35605 agagctagagatacagatga 35586
>gb|AF009660.1|HSTCRBK17 Homo sapiens T cell receptor beta locus, TCRBV7S3A2 to TCRBV12S2 region Length = 62262 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 gcaccacagatttcctcctcatct 315 |||||||||||||| ||||||||| Sbjct: 58705 gcaccacagatttcttcctcatct 58682
>gb|AC150310.1| Latimeria menadoensis clone VMRC4-40C18, complete sequence Length = 170774 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 25 tacattataattgttacattcaactgaaaacg 56 |||||||||||| |||||| ||||||||||| Sbjct: 13870 tacattataattaatacattgaactgaaaacg 13901
>gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, complete sequence Length = 173136 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 agagctagagatacagatga 106 |||||||||||||||||||| Sbjct: 16259 agagctagagatacagatga 16278
>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7 Length = 684973 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 gcaccacagatttcctcctcatct 315 |||||||||||||| ||||||||| Sbjct: 218594 gcaccacagatttcttcctcatct 218571
>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence Length = 191755 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caccaccaccacctacacac 199 |||||||||||||||||||| Sbjct: 153105 caccaccaccacctacacac 153124
>gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, complete sequence Length = 293822 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 caccaccaccacctacacac 199 |||||||||||||||||||| Sbjct: 167383 caccaccaccacctacacac 167364
>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete sequence Length = 221525 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caccaccaccacctacacac 199 |||||||||||||||||||| Sbjct: 94535 caccaccaccacctacacac 94554
>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence Length = 176452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gaaggaaagcttatttgcta 23 |||||||||||||||||||| Sbjct: 105241 gaaggaaagcttatttgcta 105260
>gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome 9, complete sequence Length = 228144 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gagctagagatacagatgat 107 |||||||||||||||||||| Sbjct: 164138 gagctagagatacagatgat 164119
>gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, complete sequence Length = 196566 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caccaccaccacctacacac 199 |||||||||||||||||||| Sbjct: 19345 caccaccaccacctacacac 19364
>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence Length = 195269 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gagctagagatacagatgat 107 |||||||||||||||||||| Sbjct: 168771 gagctagagatacagatgat 168790
>gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complete sequence Length = 129660 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aggaaagcttatttgctact 25 |||||||||||||||||||| Sbjct: 7147 aggaaagcttatttgctact 7128
>gb|AF229163.1|AF229163 Homo sapiens natural resistance-associated macrophage protein 1 (SLC11A1) gene, complete cds, alternatively spliced; and nuclear LIM interactor-interacting factor (NLI-IF) gene, complete cds Length = 32198 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caccaccaccacctacacac 199 |||||||||||||||||||| Sbjct: 31094 caccaccaccacctacacac 31113
>gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complete sequence Length = 159471 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aggaaagcttatttgctact 25 |||||||||||||||||||| Sbjct: 928 aggaaagcttatttgctact 909
>gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, complete sequence Length = 197918 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gaaggaaagcttatttgcta 23 |||||||||||||||||||| Sbjct: 37432 gaaggaaagcttatttgcta 37451
>gb|AC138308.3| Mus musculus BAC clone RP23-286G16 from 14, complete sequence Length = 148679 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gaaggaaagcttatttgcta 23 |||||||||||||||||||| Sbjct: 111508 gaaggaaagcttatttgcta 111527
>gb|AC122846.4| Mus musculus BAC clone RP23-156M18 from 19, complete sequence Length = 217949 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gaaggaaagcttatttgcta 23 |||||||||||||||||||| Sbjct: 134693 gaaggaaagcttatttgcta 134674
>gb|U66059.1| Human germline T-cell receptor beta chain Dopamine-beta-hydroxylase-like, TRY1, TRY2, TRY3, TCRBV27S1P, TCRBV22S1A2N1T, TCRBV9S1A1T, TCRBV7S1A1N2T, TCRBV5S1A1T, TCRBV13S3, TCRBV6S7P, TCRBV7S3A2T, TCRBV13S2A1T, TCRBV9S2A2PT, TCRBV7S2A1N4T, TCRBV13S9/13S2A1T, TCRBV6S5A1N1, TCRBV30S1P, TCRBV31S1, TCRBV13S5, TCRBV6S1A1N1, TCRBV32S1P, TCRBV5S5P, TCRBV1S1A1N1, TCRBV12S2A1T, TCRBV21S1, TCRBV8S4P, TCRBV12S3, TCRBV21S3A2N2T, TCRBV8S5P, TCRBV13S1 genes from bases 1 to 267156 (section 1 of 3) Length = 267156 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 gcaccacagatttcctcctcatct 315 |||||||||||||| ||||||||| Sbjct: 218594 gcaccacagatttcttcctcatct 218571
>emb|AL772389.10| Mouse DNA sequence from clone RP23-106D7 on chromosome 2, complete sequence Length = 211326 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gaaggaaagcttatttgcta 23 |||||||||||||||||||| Sbjct: 22595 gaaggaaagcttatttgcta 22576
>gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, complete sequence Length = 173026 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 agagctagagatacagatga 106 |||||||||||||||||||| Sbjct: 103588 agagctagagatacagatga 103607 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,871,902 Number of Sequences: 3902068 Number of extensions: 3871902 Number of successful extensions: 83874 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83709 Number of HSP's gapped (non-prelim): 162 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)