ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC034110.13| Homo sapiens chromosome 18, clone RP11-111H3, co... 44 0.28
2emb|AL627127.20| Mouse DNA sequence from clone RP23-360O1 on chr... 44 0.28
3gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, c... 42 1.1
4gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosom... 42 1.1
5gb|AC113600.19| Mus musculus chromosome 6, clone RP23-110A19, co... 42 1.1
6gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, co... 42 1.1
7ref|XM_785201.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.1
8emb|AL626770.9| Mouse DNA sequence from clone RP23-379J18 on chr... 42 1.1
9gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 ... 42 1.1
10gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 42 1.1
11gb|AF230340.1|AF230340 Mus musculus nuclear RNA polymerase I sma... 42 1.1
12gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 42 1.1
13emb|Z81549.2|CEF55C9 Caenorhabditis elegans Cosmid F55C9, comple... 42 1.1
14gb|AC145116.3| Mus musculus BAC clone RP23-434H14 from 6, comple... 42 1.1
15emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chrom... 42 1.1
16gb|AC170594.2| Mus musculus BAC clone RP24-425N5 from chromosome... 42 1.1
17emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on ch... 42 1.1
18gb|AY846301.1| Armillariella tabescens clone EST2000177 unknown ... 40 4.3
19gb|AY611148.1| Melanohalea olivacea voucher Vitikainen 16196 sma... 40 4.3
20gb|AF411339.1| Homo sapiens brain-derived neurotrophic factor op... 40 4.3
21gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, co... 40 4.3
22gb|AC172160.3| Pan troglodytes chromosome X clone PTB-96F20 map ... 40 4.3
23ref|NM_001039590.1| Homo sapiens ubiquitin specific peptidase 9,... 40 4.3
24ref|NM_001039591.1| Homo sapiens ubiquitin specific peptidase 9,... 40 4.3
25gb|AY435216.1| Sus scrofa T-box 21 (TBX21) mRNA, partial cds 40 4.3
26ref|NM_170735.4| Homo sapiens brain-derived neurotrophic factor ... 40 4.3
27ref|NM_170732.3| Homo sapiens brain-derived neurotrophic factor ... 40 4.3
28ref|NM_170731.3| Homo sapiens brain-derived neurotrophic factor ... 40 4.3
29ref|NM_170734.2| Homo sapiens brain-derived neurotrophic factor ... 40 4.3
30ref|NM_170733.2| Homo sapiens brain-derived neurotrophic factor ... 40 4.3
31ref|NM_001709.3| Homo sapiens brain-derived neurotrophic factor ... 40 4.3
32gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, com... 40 4.3
33emb|CT009551.8| Pig DNA sequence from clone CH242-214G8 on chrom... 40 4.3
34emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 ... 40 4.3
35gb|AC130821.3| Mus musculus BAC clone RP23-205K12 from chromosom... 40 4.3
36gb|AY368473.1| Sus scrofa isolate LWH006 natural resistance asso... 40 4.3
37gb|AF462604.1| Mus musculus HMG-L6 (Hmgl6), T2R6 (T2r6), and can... 40 4.3
38gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete seq... 40 4.3
39emb|AL691455.20| Human DNA sequence from clone CTD-2411I11 on ch... 40 4.3
40emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chro... 40 4.3
41emb|AL158047.9| Human DNA sequence from clone RP11-388B24 on chr... 40 4.3
42gb|AC087446.13| Homo sapiens chromosome 11, clone RP11-651M4, co... 40 4.3
43emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A... 40 4.3
44emb|AL109797.18|HS1172N10 Human DNA sequence from clone RP5-1172... 40 4.3
45gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 40 4.3
46emb|AL731792.12| Mouse DNA sequence from clone RP23-189P1 on chr... 40 4.3
47gb|AC079851.14| Homo sapiens 12 BAC RP11-349L8 (Roswell Park Can... 40 4.3
48emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in ... 40 4.3
49emb|CR859589.1| Pongo pygmaeus mRNA; cDNA DKFZp459O184 (from clo... 40 4.3
50emb|BX470113.8| Zebrafish DNA sequence from clone DKEY-246M15 in... 40 4.3
51gb|AC092832.7| Homo sapiens X BAC RP11-494I9 (Roswell Park Cance... 40 4.3
52gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Canc... 40 4.3
53gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell P... 40 4.3
54gb|AC099569.2| Homo sapiens chromosome 1 clone RP5-1007M22, comp... 40 4.3
55gb|AY054400.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
56gb|AY054399.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
57gb|AY054398.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
58gb|AY054397.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
59gb|AY054396.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
60gb|AY054395.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
61gb|AY054394.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
62gb|AY054393.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
63gb|AY054392.2| Homo sapiens brain-derived neurotrophic factor BD... 40 4.3
64gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, comple... 40 4.3
65gb|AC140204.3| Mus musculus BAC clone RP24-342N5 from chromosome... 40 4.3
66gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chrom... 40 4.3
67gb|AC012665.8| Homo sapiens BAC clone RP11-19E11 from 2, complet... 40 4.3
68gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, c... 40 4.3
69dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 4.3
70dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complet... 40 4.3
71gb|AC154790.2| Mus musculus BAC clone RP24-481A4 from 17, comple... 40 4.3
72gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 ... 40 4.3
73emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chro... 40 4.3
74emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chr... 40 4.3
75emb|CT033752.6| Mouse DNA sequence from clone RP23-140I20 on chr... 40 4.3
76emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2... 40 4.3
77emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chr... 40 4.3 
>gb|AC034110.13| Homo sapiens chromosome 18, clone RP11-111H3, complete sequence
          Length = 167954

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 142    tagttattttttgttgttttct 163
              ||||||||||||||||||||||
Sbjct: 141009 tagttattttttgttgttttct 140988
to top
>emb|AL627127.20| Mouse DNA sequence from clone RP23-360O1 on chromosome 4, complete
              sequence
          Length = 188629

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 140    tctagttattttttgttgtttt 161
              ||||||||||||||||||||||
Sbjct: 127552 tctagttattttttgttgtttt 127573
to top
>gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, complete sequence
          Length = 178820

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    agttattttttgttgttttct 163
              |||||||||||||||||||||
Sbjct: 154381 agttattttttgttgttttct 154361
to top
>gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosome 17, complete
             sequence
          Length = 216585

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   agttattttttgttgttttct 163
             |||||||||||||||||||||
Sbjct: 79529 agttattttttgttgttttct 79549
to top
>gb|AC113600.19| Mus musculus chromosome 6, clone RP23-110A19, complete sequence
          Length = 212705

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 143   agttattttttgttgttttcttctt 167
             |||||||||||||||||| ||||||
Sbjct: 36993 agttattttttgttgtttccttctt 36969
to top
>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence
          Length = 228842

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    tttttgttgttttcttcttgg 169
              |||||||||||||||||||||
Sbjct: 198151 tttttgttgttttcttcttgg 198171
to top
>ref|XM_785201.1| PREDICTED: Strongylocentrotus purpuratus similar to guanine
           nucleotide binding protein-like 2 (nucleolar)
           (LOC585370), mRNA
          Length = 2328

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 11  tcctccatcatcgaacaccaa 31
           |||||||||||||||||||||
Sbjct: 711 tcctccatcatcgaacaccaa 691
to top
>emb|AL626770.9| Mouse DNA sequence from clone RP23-379J18 on chromosome 11 Contains a
             novel gene and a serine/arginine repetitive matrix 1
             (Srrm1) pseudogene, complete sequence
          Length = 188854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   tttttgttgttttcttcttgg 169
             |||||||||||||||||||||
Sbjct: 41382 tttttgttgttttcttcttgg 41402
to top
>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region,
             complete sequence
          Length = 153869

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   tttttgttgttttcttcttgg 169
             |||||||||||||||||||||
Sbjct: 29740 tttttgttgttttcttcttgg 29720
to top
>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region,
              complete sequence
          Length = 172199

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tttttgttgttttcttcttgg 169
              |||||||||||||||||||||
Sbjct: 124156 tttttgttgttttcttcttgg 124136
to top
>gb|AF230340.1|AF230340 Mus musculus nuclear RNA polymerase I small specific subunit Rpa12
            gene, complete cds
          Length = 4591

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 149  tttttgttgttttcttcttgg 169
            |||||||||||||||||||||
Sbjct: 2253 tttttgttgttttcttcttgg 2273
to top
>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete
              sequence
          Length = 158414

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    tttttgttgttttcttcttgg 169
              |||||||||||||||||||||
Sbjct: 124138 tttttgttgttttcttcttgg 124118
to top
>emb|Z81549.2|CEF55C9 Caenorhabditis elegans Cosmid F55C9, complete sequence
          Length = 29404

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   tattttttgttgttttcttct 166
             |||||||||||||||||||||
Sbjct: 10274 tattttttgttgttttcttct 10294
to top
>gb|AC145116.3| Mus musculus BAC clone RP23-434H14 from 6, complete sequence
          Length = 204134

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 143    agttattttttgttgttttcttctt 167
              |||||||||||||||||| ||||||
Sbjct: 203407 agttattttttgttgtttccttctt 203383
to top
>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete
             sequence
          Length = 202624

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   tttttgttgttttcttcttgg 169
             |||||||||||||||||||||
Sbjct: 61646 tttttgttgttttcttcttgg 61666
to top
>gb|AC170594.2| Mus musculus BAC clone RP24-425N5 from chromosome 17, complete sequence
          Length = 161769

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   agttattttttgttgttttct 163
             |||||||||||||||||||||
Sbjct: 10508 agttattttttgttgttttct 10528
to top
>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete
              sequence
          Length = 201671

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 141    ctagttattttttgttgtttt 161
              |||||||||||||||||||||
Sbjct: 108568 ctagttattttttgttgtttt 108588
to top
>gb|AY846301.1| Armillariella tabescens clone EST2000177 unknown mRNA
          Length = 3416

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  cctctagttattttttgttg 157
            ||||||||||||||||||||
Sbjct: 1398 cctctagttattttttgttg 1417
to top
>gb|AY611148.1| Melanohalea olivacea voucher Vitikainen 16196 small subunit
           ribosomal RNA gene, partial sequence; mitochondrial
          Length = 911

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 ttttttgttgttttcttctt 167
           ||||||||||||||||||||
Sbjct: 616 ttttttgttgttttcttctt 635
to top
>gb|AF411339.1| Homo sapiens brain-derived neurotrophic factor opposite strand (BDNFOS)
             gene, partial sequence; and brain-derived neurotrophic
             factor (BDNF) gene, complete cds
          Length = 115886

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   gttattttttgttgttttct 163
             ||||||||||||||||||||
Sbjct: 97003 gttattttttgttgttttct 96984
to top
>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence
          Length = 184327

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   gggaggagaggagagtttac 106
            ||||||||||||||||||||
Sbjct: 2258 gggaggagaggagagtttac 2239
to top
>gb|AC172160.3| Pan troglodytes chromosome X clone PTB-96F20 map human otholog p11.4,
              complete sequence
          Length = 203345

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    ttttttgttgttttcttctt 167
              ||||||||||||||||||||
Sbjct: 156782 ttttttgttgttttcttctt 156801
to top
>ref|NM_001039590.1| Homo sapiens ubiquitin specific peptidase 9, X-linked (USP9X),
             transcript variant 3, mRNA
          Length = 12401

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ttttttgttgttttcttctt 167
             ||||||||||||||||||||
Sbjct: 10381 ttttttgttgttttcttctt 10400
to top
>ref|NM_001039591.1| Homo sapiens ubiquitin specific peptidase 9, X-linked (USP9X),
             transcript variant 4, mRNA
          Length = 12353

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ttttttgttgttttcttctt 167
             ||||||||||||||||||||
Sbjct: 10333 ttttttgttgttttcttctt 10352
to top
>gb|AY435216.1| Sus scrofa T-box 21 (TBX21) mRNA, partial cds
          Length = 200

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  gttggggaggagaggagagt 102
           ||||||||||||||||||||
Sbjct: 58  gttggggaggagaggagagt 39
to top
>ref|NM_170735.4| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript
            variant 1, mRNA
          Length = 4247

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2340 gttattttttgttgttttct 2321
to top
>ref|NM_170732.3| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript
            variant 2, mRNA
          Length = 4084

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2177 gttattttttgttgttttct 2158
to top
>ref|NM_170731.3| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript
            variant 3, mRNA
          Length = 4044

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2137 gttattttttgttgttttct 2118
to top
>ref|NM_170734.2| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript
            variant 6, mRNA
          Length = 3958

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2051 gttattttttgttgttttct 2032
to top
>ref|NM_170733.2| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript
            variant 5, mRNA
          Length = 4016

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2109 gttattttttgttgttttct 2090
to top
>ref|NM_001709.3| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript
            variant 4, mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2065 gttattttttgttgttttct 2046
to top
>gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, complete sequence
          Length = 163755

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    gggaggagaggagagtttac 106
             ||||||||||||||||||||
Sbjct: 62225 gggaggagaggagagtttac 62244
to top
>emb|CT009551.8| Pig DNA sequence from clone CH242-214G8 on chromosome 17, complete
             sequence
          Length = 239237

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   tagttattttttgttgtttt 161
             ||||||||||||||||||||
Sbjct: 47025 tagttattttttgttgtttt 47006
to top
>emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3,
             complete sequence
          Length = 104085

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   ttttgttgttttcttcttgg 169
             ||||||||||||||||||||
Sbjct: 40136 ttttgttgttttcttcttgg 40155
to top
>gb|AC130821.3| Mus musculus BAC clone RP23-205K12 from chromosome 13, complete sequence
          Length = 227411

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     gggaggagaggagagtttac 106
              ||||||||||||||||||||
Sbjct: 114433 gggaggagaggagagtttac 114452
to top
>gb|AY368473.1| Sus scrofa isolate LWH006 natural resistance associated macrophage
           protein 1 (NRAMP1) gene, intron 6 and partial cds
          Length = 455

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 ttttttgttgttttcttctt 167
           ||||||||||||||||||||
Sbjct: 352 ttttttgttgttttcttctt 371
to top
>gb|AF462604.1| Mus musculus HMG-L6 (Hmgl6), T2R6 (T2r6), and candidate taste receptor
             T2R4 (T2r4) genes, complete cds
          Length = 84503

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 67388 ttattttttgttgttttctt 67369
to top
>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tagttattttttgttgtttt 161
             ||||||||||||||||||||
Sbjct: 67630 tagttattttttgttgtttt 67649



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tagttattttttgttgtttt 161
             ||||||||||||||||||||
Sbjct: 67246 tagttattttttgttgtttt 67265
to top
>emb|AL691455.20| Human DNA sequence from clone CTD-2411I11 on chromosome 10 Contains two
             CpG islands, complete sequence
          Length = 41452

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 137   tcctctagttattttttgttgttt 160
             ||||||||||||||||| ||||||
Sbjct: 19369 tcctctagttatttttttttgttt 19346
to top
>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part
             of one variant of the ROR2 gene for receptor tyrosine
             kinase-like orphan receptor 2, complete sequence
          Length = 66959

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     cacggaacaatcctccatca 20
             ||||||||||||||||||||
Sbjct: 17703 cacggaacaatcctccatca 17684
to top
>emb|AL158047.9| Human DNA sequence from clone RP11-388B24 on chromosome 9 Contains a
            novel pseudogene, a novel gene, a DEAD/H
            (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase)
            (HRH-J8) (DDX10) pseudogene and a ribosomal protein S2
            (LLREP3) (RPS2) pseudogene, complete sequence
          Length = 201629

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  tttttgttgttttcttcttg 168
            ||||||||||||||||||||
Sbjct: 6997 tttttgttgttttcttcttg 7016
to top
>gb|AC087446.13| Homo sapiens chromosome 11, clone RP11-651M4, complete sequence
          Length = 167865

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    gttattttttgttgttttct 163
              ||||||||||||||||||||
Sbjct: 148979 gttattttttgttgttttct 148960
to top
>emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A3 on chromosome 1q41-42.2
             Contains the 5' end of a novel gene (KIAA0792), the LEFTB
             gene for left-right determination, factor B, the PYCR2
             gene for pyrroline-5-carboxylate reductase family, member
             2, the EBAF gene for endometrial bleeding associated
             factor (left-right determination, factor A; transforming
             growth factor beta superfamily), a novel gene, an NADH
             dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa
             (NDUFA3) pseudogene and two CpG islands, complete sequence
          Length = 127736

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 80450 ttattttttgttgttttctt 80431
to top
>emb|AL109797.18|HS1172N10 Human DNA sequence from clone RP5-1172N10 on chromosome Xp11.3-11.4
             Contains the 3' end of the USP9X gene for X chromosome
             ubiquitin specific protease 9 (fat facets-like
             Drosophila), a novel gene and a CpG island, complete
             sequence
          Length = 129293

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ttttttgttgttttcttctt 167
             ||||||||||||||||||||
Sbjct: 60229 ttttttgttgttttcttctt 60248
to top
>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     aaagagttggggaggagagg 97
              ||||||||||||||||||||
Sbjct: 182578 aaagagttggggaggagagg 182559
to top
>emb|AL731792.12| Mouse DNA sequence from clone RP23-189P1 on chromosome 11 Contains the
             5' end of a novel gene, the 3' end of the Spnb2 gene for
             spectrin beta 2 and a CpG island, complete sequence
          Length = 143722

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   attttttgttgttttcttct 166
             ||||||||||||||||||||
Sbjct: 12564 attttttgttgttttcttct 12545
to top
>gb|AC079851.14| Homo sapiens 12 BAC RP11-349L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 82421

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 43890 ttattttttgttgttttctt 43871
to top
>emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in linkage group 11,
             complete sequence
          Length = 209188

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 71142 ttattttttgttgttttctt 71123
to top
>emb|CR859589.1| Pongo pygmaeus mRNA; cDNA DKFZp459O184 (from clone DKFZp459O184)
          Length = 3241

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  ttattttttgttgttttctt 164
            ||||||||||||||||||||
Sbjct: 1823 ttattttttgttgttttctt 1804
to top
>emb|BX470113.8| Zebrafish DNA sequence from clone DKEY-246M15 in linkage group 17,
             complete sequence
          Length = 118640

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   gttattttttgttgttttct 163
             ||||||||||||||||||||
Sbjct: 63786 gttattttttgttgttttct 63767
to top
>gb|AC092832.7| Homo sapiens X BAC RP11-494I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196491

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gtagtactaggtgattgcat 243
              ||||||||||||||||||||
Sbjct: 109973 gtagtactaggtgattgcat 109992
to top
>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219861

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaagagttggggaggagagg 97
              ||||||||||||||||||||
Sbjct: 197420 aaagagttggggaggagagg 197439
to top
>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 103196

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ttttttgttgttttcttctt 167
             ||||||||||||||||||||
Sbjct: 20444 ttttttgttgttttcttctt 20463
to top
>gb|AC099569.2| Homo sapiens chromosome 1 clone RP5-1007M22, complete sequence
          Length = 126833

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   gttattttttgttgttttct 163
             ||||||||||||||||||||
Sbjct: 18149 gttattttttgttgttttct 18168
to top
>gb|AY054400.2| Homo sapiens brain-derived neurotrophic factor BDNF6B (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 3957

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2050 gttattttttgttgttttct 2031
to top
>gb|AY054399.2| Homo sapiens brain-derived neurotrophic factor BDNF6A (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 3856

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 1949 gttattttttgttgttttct 1930
to top
>gb|AY054398.2| Homo sapiens brain-derived neurotrophic factor BDNF5 (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 3971

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2064 gttattttttgttgttttct 2045
to top
>gb|AY054397.2| Homo sapiens brain-derived neurotrophic factor BDNF4 (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 3924

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2017 gttattttttgttgttttct 1998
to top
>gb|AY054396.2| Homo sapiens brain-derived neurotrophic factor BDNF3 (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 3841

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 1934 gttattttttgttgttttct 1915
to top
>gb|AY054395.2| Homo sapiens brain-derived neurotrophic factor BDNF2C (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 4083

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2176 gttattttttgttgttttct 2157
to top
>gb|AY054394.2| Homo sapiens brain-derived neurotrophic factor BDNF2B (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 4000

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2093 gttattttttgttgttttct 2074
to top
>gb|AY054393.2| Homo sapiens brain-derived neurotrophic factor BDNF2A (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 3786

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 1879 gttattttttgttgttttct 1860
to top
>gb|AY054392.2| Homo sapiens brain-derived neurotrophic factor BDNF1 (BDNF) mRNA,
            complete cds, alternatively spliced
          Length = 4043

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gttattttttgttgttttct 163
            ||||||||||||||||||||
Sbjct: 2136 gttattttttgttgttttct 2117
to top
>gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, complete sequence
          Length = 118022

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   gttattttttgttgttttcttctt 167
             |||||||||| |||||||||||||
Sbjct: 80393 gttattttttattgttttcttctt 80370
to top
>gb|AC140204.3| Mus musculus BAC clone RP24-342N5 from chromosome 6, complete sequence
          Length = 200130

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 99931 ttattttttgttgttttctt 99950
to top
>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown,
             complete sequence
          Length = 159393

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 74036 ttattttttgttgttttctt 74017
to top
>gb|AC012665.8| Homo sapiens BAC clone RP11-19E11 from 2, complete sequence
          Length = 126039

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   gttattttttgttgttttcttctt 167
             |||||||||| |||||||||||||
Sbjct: 69444 gttattttttattgttttcttctt 69421
to top
>gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, complete sequence
          Length = 141200

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   gttattttttgttgttttct 163
             ||||||||||||||||||||
Sbjct: 77416 gttattttttgttgttttct 77435
to top
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    ttattttttgttgttttctt 164
              ||||||||||||||||||||
Sbjct: 691782 ttattttttgttgttttctt 691801
to top
>dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complete sequence
          Length = 150613

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   ttattttttgttgttttctt 164
             ||||||||||||||||||||
Sbjct: 87588 ttattttttgttgttttctt 87569
to top
>gb|AC154790.2| Mus musculus BAC clone RP24-481A4 from 17, complete sequence
          Length = 194675

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    ttattttttgttgttttctt 164
              ||||||||||||||||||||
Sbjct: 191706 ttattttttgttgttttctt 191725
to top
>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete
              sequence
          Length = 288721

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    ttttttgttgttttcttctt 167
              ||||||||||||||||||||
Sbjct: 104288 ttttttgttgttttcttctt 104269
to top
>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete
              sequence
          Length = 189998

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    ttattttttgttgttttctt 164
              ||||||||||||||||||||
Sbjct: 134393 ttattttttgttgttttctt 134412
to top
>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete
             sequence
          Length = 123244

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 143   agttattttttgttgttttcttct 166
             |||| |||||||||||||||||||
Sbjct: 74196 agtttttttttgttgttttcttct 74219
to top
>emb|CT033752.6| Mouse DNA sequence from clone RP23-140I20 on chromosome 17, complete
              sequence
          Length = 216455

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    ttattttttgttgttttctt 164
              ||||||||||||||||||||
Sbjct: 162325 ttattttttgttgttttctt 162344
to top
>emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 151930

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 141    ctagttattttttgttgttttcttcttg 168
              |||||| |||||||||||||| ||||||
Sbjct: 135250 ctagtttttttttgttgtttttttcttg 135223
to top
>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete
              sequence
          Length = 192787

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    tagttattttttgttgtttt 161
              ||||||||||||||||||||
Sbjct: 124634 tagttattttttgttgtttt 124615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,567,166
Number of Sequences: 3902068
Number of extensions: 3567166
Number of successful extensions: 101077
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100921
Number of HSP's gapped (non-prelim): 156
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top