>HSBH1_SOYBN (P46608) Homeobox protein SBH1|
          Length = 379

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +2

Query: 98  SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENHMD 277
           SI   +NHN+N T + D       +N+T LG         +Y  E +D HH HH  N+ +
Sbjct: 70  SIMLHNNHNNNKTDDDDN------NNNTGLG---------YYFME-SDHHHHHHGNNNNN 113

Query: 278 GNCSCRSQET------AHP 316
           G+ S  S         AHP
Sbjct: 114 GSSSSSSSSAVKAKIMAHP 132

>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)|
           (HRPI) (Fragment)
          Length = 473

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 104 QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 271
           QHE +H+H+    H   A +  H+H   G +     Q        D+ H HH  +H
Sbjct: 60  QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115

>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)|
           (KP)
          Length = 634

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 104 QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 271
           QHE +H+H+    H   A +  H+H   G +     Q        D+ H HH  +H
Sbjct: 60  QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115

>HXB3_HUMAN (P14651) Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)|
          Length = 431

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 251 IHHSENHMDGNCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPP 388
           ++H  +H  GN          PS   GPC+ + +   +S  HA PP
Sbjct: 373 LNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPP 418

>GCVK_HCMVT (Q68101) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)|
          Length = 707

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 281 NCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPPLEGLRR-CVHE 418
           NCS R +E  HP+    P Q     +LI   HA  P+ GLRR C+ E
Sbjct: 510 NCSHRLRECYHPAFRPMPLQ----KLLICDPHARFPVAGLRRYCMSE 552

>GCVK_HCMVA (P16788) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)|
           (HSRF3 protein)
          Length = 707

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 281 NCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPPLEGLRR-CVHE 418
           NCS R +E  HP+    P Q     +LI   HA  P+ GLRR C+ E
Sbjct: 510 NCSHRLRECYHPAFRPMPLQ----KLLICDPHARFPVAGLRRYCMSE 552

>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)|
          Length = 633

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 206 CTQTF-YSSELTDRHHIHHSENHMDGNCSCRSQETAHPSGEAGPCQVNG 349
           C + F + ++ T+   IH  EN  D   + R Q  +HP  +   C V G
Sbjct: 452 CGKDFSHITDFTEHQRIHAGENSYDSEQALRQQSLSHPREKPYQCNVCG 500

>YB88_YEAST (P38330) Protein YBR238C|
          Length = 731

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
 Frame = +2

Query: 116 NHNHNTTQNHDELA*Y**HNHTSLG-------------WILTYC------TQTFYSSELT 238
           NH+HN  +NH +      HNH+                W    C      +QT Y S+  
Sbjct: 105 NHHHNNNRNHHQNN----HNHSKYNNSNQGNSISPDSPWFHKVCAFEDCVSQTLYMSQTP 160

Query: 239 DRHHIHHSENHMDGNCS 289
            R ++ H   H + N +
Sbjct: 161 RRQNMKHHSEHPNSNAN 177

>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6|
          Length = 3519

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320  GEAGPCQVNG--SLILISQTHALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELL 481
            G      VNG  S ++     AL  L  L  C  EGV A RV VD+  HS  ++ L
Sbjct: 2368 GRVSVAAVNGPSSTVVSGDVQALDEL--LAGCEREGVRARRVPVDYASHSAQMDQL 2421



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 320 GEAGPCQVNG--SLILISQTHALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELL 481
           G      VNG  S ++     AL  L  L  C  EGV A RV VD+  HS  ++ L
Sbjct: 717 GRLSVAAVNGPSSTVVSGDVQALDEL--LAGCEREGVRARRVPVDYASHSAQMDQL 770

>Y1571_AERPE (Q9YBM7) Hypothetical protein APE1571|
          Length = 469

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 249 IYIIQRTIWMVIAHADPRKRPIQVEKRDHARSMAP*FSSVKPMPFLLSRASGDAFMK-AW 425
           ++ + + IW V +H DP +R + V    H   + P      P P   S+   DA  K   
Sbjct: 384 VHDVNQVIWAVSSHVDP-QRDVLVVPHSHTDELDP----ATPTPMYGSKLGIDATRKLPE 438

Query: 426 EHPGYMWTSCATPE 467
           E+ G  W     P+
Sbjct: 439 EYGGKQWPEEVAPD 452

>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 909

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 308 PFPGICMSNYHPYGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*CGC 171
           P PGIC    +  G   D YG C    K+  + C M  +  G   C
Sbjct: 543 PAPGICFERVNSAG---DPYGNCGKVSKSSFAKCEMRDAKCGKIQC 585

>DLL4_XENLA (P53775) Homeobox protein DLL-4 (XDLL-4)|
          Length = 285

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 319 WRSGTMPGQWLPDSHQSNPCPSSS 390
           W+SG +P   LP   +S+PC S S
Sbjct: 186 WKSGEIPSDQLPVGSESSPCSSPS 209

>ZBT39_HUMAN (O15060) Zinc finger and BTB domain-containing protein 39|
          Length = 712

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 194 ILTYCTQTFYSSELTDRHH--IHHSENHMDGNCSCRSQETAHPSGE 325
           +L  C  TF   E T R       SE+H  G  SC S E AHP GE
Sbjct: 114 LLQACHSTFPDLESTARAKPLTSTSESH-SGTLSCPSAEPAHPLGE 158

>Y4495_PHOPR (Q6LK12) UPF0060 membrane protein PBPRB0495|
          Length = 110

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 282 LPSIWFSE*-CIWCLSVSSEE*NVWVQYVSIQPRLVWLCYQYYANSS*FCVVLWLWL 115
           LP +W  E   IW L  ++    ++   +++ P      Y  Y     F  +LWLWL
Sbjct: 23  LPYLWLREGKTIWLLIPAAISLALFAWLLTLHPAAAGRVYAAYGGVYIFTAILWLWL 79

>YAC1_MAIZE (P08771) Transposable element activator hypothetical 12 kDa protein|
           (AC 12 kDa protein)
          Length = 102

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 77  ISLPWRYSIQHESNHNHNTTQNH 145
           + + W   + H  NHNHN   NH
Sbjct: 10  VKMIWLLFMNHNHNHNHNQNHNH 32

>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)|
          Length = 636

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +2

Query: 98  SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTY----CTQTF-YSSELTDRHHIHHS 262
           S  +  +  H+T+   DE         ++L  + +Y    C + F + ++ TD   IH +
Sbjct: 424 SSNYSIDFKHSTSLTQDE---------STLTEVKSYHCNDCGEDFSHITDFTDHQRIHTA 474

Query: 263 ENHMDGNCSCRSQETAHPSGEAGPCQVNG 349
           EN  D   +   Q  +HP  +   C V G
Sbjct: 475 ENPYDCEQAFSQQAISHPGEKPYQCNVCG 503

>CRT10_YEAST (Q08226) Protein CRT10 (Constitutive RNR transcription regulator|
           10)
          Length = 957

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 353 LILISQTH-ALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELL 481
           LI+IS TH  + PL+G+  C  + +  +   ++F+CH + L  +
Sbjct: 792 LIIISATHHEIFPLDGVVTCASKSLLQALNRINFVCHIKELNCI 835

>ACDA1_ARCFU (O29165) Acetyl-CoA decarbonylase/synthase complex alpha subunit 1|
           (EC 1.2.99.2) (ACDS complex alpha subunit 1) (ACDS
           complex carbon monoxide dehydrogenase 1) (ACDS CODH 1)
          Length = 802

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = -3

Query: 341 PGMVPLLHLDGPFPGICMSNYHP-YGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*CGCVI 165
           PG++ L   D       +  Y P Y  + D   +C       M  C++S++  G CG  +
Sbjct: 41  PGILELRKWDHKL----LERYEPFYAPMQDFCNLCT------MGPCDLSMNKRGACGIDL 90

Query: 164 STMPTRRDFVLCC 126
            T   R   + CC
Sbjct: 91  KTAKARLVTIACC 103

>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 298 PGNGPSKWRSGTMPGQWLPD--SHQSNPCPSSSRGPQ 402
           PG GP + R GT P     D  S Q N CPS   GP+
Sbjct: 361 PGFGPQRPRPGTRPRGNPCDQCSAQPNHCPSGPPGPR 397

>MDTH_ERWCT (Q6D469) Multidrug resistance protein mdtH|
          Length = 401

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 369 KPMPF--LLSRASGDAFMKAWEHPGYMWTSCA 458
           KPM    +L RASG  FM   + P  +W SCA
Sbjct: 76  KPMIITGMLLRASGFVFMAIADEPWLLWLSCA 107

>UBP22_MOUSE (Q5DU02) Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 22)
           (Ubiquitin-specific-processing protease 22)
           (Deubiquitinating enzyme 22)
          Length = 525

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 473 QGFWSGT*SPHIPWMLPRL---HERIA*GPREEEGHGF 369
           Q F+SG  SPHIP+ L  L   H R   G  +++ H F
Sbjct: 229 QEFYSGHRSPHIPYKLLHLVWTHARHLAGYEQQDAHEF 266

>UBP22_HUMAN (Q9UPT9) Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 22)
           (Ubiquitin-specific-processing protease 22)
           (Deubiquitinating enzyme 22)
          Length = 525

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 473 QGFWSGT*SPHIPWMLPRL---HERIA*GPREEEGHGF 369
           Q F+SG  SPHIP+ L  L   H R   G  +++ H F
Sbjct: 229 QEFYSGHRSPHIPYKLLHLVWTHARHLAGYEQQDAHEF 266

>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2204

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 484  EEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAIDLAWSR 326
            EEK  A  + ++  I+P  +HA M AS     R++  GL D     I +A +R
Sbjct: 1019 EEKALAEFLLNQEVIHPRVAHAIMEASSVG-RRKQIQGLVDTTNTVIKIALTR 1070


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,323,990
Number of Sequences: 219361
Number of extensions: 1827296
Number of successful extensions: 4723
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4704
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)