ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41g07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474301.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 858 Score = 117 bits (59), Expect = 4e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 372 tctatattcaaagcttggagcagcttcggccatgatccggggattcctccaggtaaattg 431 |||| |||||| ||||| || | ||||||||||||| | || |||||||| |||| |||| Sbjct: 827 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 768 Query: 432 aactccaagagtttcccccgagctctgtagaaatcctccactggttcacacaaatcatgg 491 |||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 767 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacacaaatcatga 708 Query: 492 taaacac 498 ||||||| Sbjct: 707 taaacac 701
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 93.7 bits (47), Expect = 5e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 372 tctatattcaaagcttggagcagcttcggccatgatccggggattcctccaggtaaattg 431 |||| |||||| ||||| || | ||||||||||||| | || |||||||| |||| |||| Sbjct: 181991 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 182050 Query: 432 aactccaagagtttcccccgagctctgtagaaatcctccactggttcacac 482 |||||||| ||||| || || ||||||||||| ||||||||||| |||||| Sbjct: 182051 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacac 182101
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 5e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 372 tctatattcaaagcttggagcagcttcggccatgatccggggattcctccaggtaaattg 431 |||| |||||| ||||| || | ||||||||||||| | || |||||||| |||| |||| Sbjct: 34270609 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 34270668 Query: 432 aactccaagagtttcccccgagctctgtagaaatcctccactggttcacac 482 |||||||| ||||| || || ||||||||||| ||||||||||| |||||| Sbjct: 34270669 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacac 34270719
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 93.7 bits (47), Expect = 5e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 372 tctatattcaaagcttggagcagcttcggccatgatccggggattcctccaggtaaattg 431 |||| |||||| ||||| || | ||||||||||||| | || |||||||| |||| |||| Sbjct: 53224 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 53283 Query: 432 aactccaagagtttcccccgagctctgtagaaatcctccactggttcacac 482 |||||||| ||||| || || ||||||||||| ||||||||||| |||||| Sbjct: 53284 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacac 53334
>gb|AY110704.1| Zea mays CL16117_1 mRNA sequence Length = 973 Score = 73.8 bits (37), Expect = 5e-10 Identities = 83/97 (85%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 395 cttcggccatgatccggggattcctccaggtaaattgaactccaagagtttcccccgagc 454 ||||||||||||| |||| || || ||||| | ||||||||||| |||||||| || || Sbjct: 366 cttcggccatgattcgggtatcccaccaggcagattgaactccagcagtttcccacgtgc 425 Query: 455 tctgtag-aaatcctccactggttcacacaaatcatg 490 ||||||| || ||||||||||||||| ||||||||| Sbjct: 426 tctgtagcaactcctccactggttcagtcaaatcatg 462
>ref|NM_116299.2| Arabidopsis thaliana unknown protein AT4G00740 mRNA, complete cds Length = 2371 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 tggttcacacaaatcatggtaaacac 498 |||||||||| ||||||||||||||| Sbjct: 1678 tggttcacaccaatcatggtaaacac 1653
>gb|BT000151.1| Arabidopsis thaliana Unknown protein (At4g00740) mRNA, complete cds Length = 1806 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 tggttcacacaaatcatggtaaacac 498 |||||||||| ||||||||||||||| Sbjct: 1494 tggttcacaccaatcatggtaaacac 1469
>gb|BT008377.1| Arabidopsis thaliana At4g00740 gene, complete cds Length = 1803 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 tggttcacacaaatcatggtaaacac 498 |||||||||| ||||||||||||||| Sbjct: 1494 tggttcacaccaatcatggtaaacac 1469
>gb|AY059913.1| Arabidopsis thaliana Unknown protein (At4g00740; F15P23.2) mRNA, complete cds Length = 1963 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 tggttcacacaaatcatggtaaacac 498 |||||||||| ||||||||||||||| Sbjct: 1650 tggttcacaccaatcatggtaaacac 1625
>gb|AY059835.1| Arabidopsis thaliana Unknown protein (F15P23.2) mRNA, complete cds Length = 2343 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 tggttcacacaaatcatggtaaacac 498 |||||||||| ||||||||||||||| Sbjct: 1650 tggttcacaccaatcatggtaaacac 1625
>emb|BX827248.1|CNS0A2HD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS26ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2364 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 tggttcacacaaatcatggtaaacac 498 |||||||||| ||||||||||||||| Sbjct: 1679 tggttcacaccaatcatggtaaacac 1654
>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete sequence Length = 166948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 aactacttcctagagatgcca 262 ||||||||||||||||||||| Sbjct: 122542 aactacttcctagagatgcca 122562
>emb|AL591645.35| Human DNA sequence from clone RP13-971O21 on chromosome Xp11.1-11.22, complete sequence Length = 148773 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ttcaaaaggatatttgcagca 54 ||||||||||||||||||||| Sbjct: 73231 ttcaaaaggatatttgcagca 73251
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 tctgcctgcataatgttttca 37 ||||||||||||||||||||| Sbjct: 322826 tctgcctgcataatgttttca 322806
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 tctgcctgcataatgttttca 37 ||||||||||||||||||||| Sbjct: 2206719 tctgcctgcataatgttttca 2206739
>ref|NM_001007553.1| Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 1, mRNA Length = 4115 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 984 ctcgcaacattatgctgttg 1003
>ref|NM_007158.4| Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 2, mRNA Length = 4041 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 891 ctcgcaacattatgctgttg 910
>ref|NM_027295.1| Mus musculus RAB28, member RAS oncogene family (Rab28), mRNA Length = 1667 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tcaaagcttggagcagcttc 398 |||||||||||||||||||| Sbjct: 1177 tcaaagcttggagcagcttc 1158
>gb|BC032446.1| Homo sapiens cold shock domain containing E1, RNA-binding, transcript variant 2, mRNA (cDNA clone MGC:40318 IMAGE:5111213), complete cds Length = 2951 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 873 ctcgcaacattatgctgttg 892
>gb|BC017662.1| Homo sapiens cold shock domain containing E1, RNA-binding, mRNA (cDNA clone IMAGE:3912700), containing frame-shift errors Length = 3125 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 474 ctcgcaacattatgctgttg 493
>emb|AL596092.8| Human DNA sequence from clone RP11-351N4 on chromosome 13 Contains part of a novel gene (KIAA0774), a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a novel gene and a CpG island, complete sequence Length = 153841 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 tttatctgcctgcataatgttttcaaaa 40 ||||||| |||||||| ||||||||||| Sbjct: 79310 tttatcttcctgcatattgttttcaaaa 79337
>emb|AL096773.6|HS1000E10 Human DNA sequence from clone RP5-1000E10 on chromosome 1p12-13.3 Contains the 5' end of the gene for a novel protein (FLJ37099), the AMPD1 gene for adenosine monophosphate deaminase 1 (isoform M), the NRAS gene for neuroblastoma RAS viral (v-ras) oncogene homolog, the gene for NRAS-related gene (D1S155E) and the gene for a novel protein (FLJ44339), complete sequence Length = 140207 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 70603 ctcgcaacattatgctgttg 70622
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 aacttgcgcaatcgatgatc 192 |||||||||||||||||||| Sbjct: 3224981 aacttgcgcaatcgatgatc 3225000
>gb|AC158920.4| Mus musculus chromosome 5, clone RP24-238C7, complete sequence Length = 156671 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tcaaagcttggagcagcttc 398 |||||||||||||||||||| Sbjct: 61736 tcaaagcttggagcagcttc 61717
>emb|CR860764.1| Pongo pygmaeus mRNA; cDNA DKFZp459E136 (from clone DKFZp459E136) Length = 4041 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 887 ctcgcaacattatgctgttg 906
>emb|CR860446.1| Pongo pygmaeus mRNA; cDNA DKFZp459H081 (from clone DKFZp459H081) Length = 4025 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 870 ctcgcaacattatgctgttg 889
>emb|CR860243.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1619 (from clone DKFZp469D1619) Length = 3462 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 717 ctcgcaacattatgctgttg 736
>gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, complete sequence Length = 172689 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gcataatgttttcaaaagga 43 |||||||||||||||||||| Sbjct: 72099 gcataatgttttcaaaagga 72118
>emb|CR749431.1| Homo sapiens mRNA; cDNA DKFZp779B0247 (from clone DKFZp779B0247) Length = 4168 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 1017 ctcgcaacattatgctgttg 1036
>emb|CR749378.1| Homo sapiens mRNA; cDNA DKFZp779J1455 (from clone DKFZp779J1455) Length = 4188 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 1035 ctcgcaacattatgctgttg 1054
>emb|CR593292.1| full-length cDNA clone CS0DI032YO05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1068 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 228 ctcgcaacattatgctgttg 247
>dbj|AK022528.1| Homo sapiens cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to UNR PROTEIN Length = 3206 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 453 ctcgcaacattatgctgttg 472
>dbj|AK022516.1| Homo sapiens cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to UNR PROTEIN Length = 3206 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 453 ctcgcaacattatgctgttg 472
>gb|AY049788.1| Homo sapiens NRAS-related protein (UNR) mRNA, complete cds Length = 2537 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 440 ctcgcaacattatgctgttg 459
>dbj|AK159493.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420021I10 product:RAB28, member RAS oncogene family, full insert sequence Length = 1631 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tcaaagcttggagcagcttc 398 |||||||||||||||||||| Sbjct: 1178 tcaaagcttggagcagcttc 1159
>gb|AC008698.6| Homo sapiens chromosome 5 clone CTB-70H11, complete sequence Length = 76487 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gcataatgttttcaaaagga 43 |||||||||||||||||||| Sbjct: 139 gcataatgttttcaaaagga 120
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 ctgcataatgttttcaaaaggata 45 ||||||||| |||||||||||||| Sbjct: 4830616 ctgcataatattttcaaaaggata 4830593
>emb|BX255960.14| Zebrafish DNA sequence from clone DKEY-265E17 in linkage group 23, complete sequence Length = 172219 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ataatgttttcaaaaggata 45 |||||||||||||||||||| Sbjct: 62246 ataatgttttcaaaaggata 62265
>emb|AL928695.23| Zebrafish DNA sequence from clone CH211-217M19 in linkage group 16, complete sequence Length = 215878 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aggctacaaatacataatac 316 |||||||||||||||||||| Sbjct: 76203 aggctacaaatacataatac 76184
>dbj|AB072746.1| Macaca fascicularis testis cDNA clone:QtsA-16005, similar to human upstream of NRAS (UNR),isoform 2, mRNA, NM_007158.2 Length = 2027 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 857 ctcgcaacattatgctgttg 876
>gb|AF116029.1| Aliolimnatis michaelseni cytochrome c oxidase subunit I gene, partial cds; mitochondrial Length = 651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 atggccctgaatgaactact 248 |||||||||||||||||||| Sbjct: 376 atggccctgaatgaactact 357
>gb|AF077054.1| Homo sapiens unr protein mRNA, complete cds Length = 3582 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 845 ctcgcaacattatgctgttg 864
>dbj|AK213358.1| Mus musculus cDNA, clone:Y2G0128B13, strand:unspecified Length = 363 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tcaaagcttggagcagcttc 398 |||||||||||||||||||| Sbjct: 147 tcaaagcttggagcagcttc 128
>dbj|AK211503.1| Mus musculus cDNA, clone:Y2G0121P16, strand:unspecified Length = 396 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tcaaagcttggagcagcttc 398 |||||||||||||||||||| Sbjct: 147 tcaaagcttggagcagcttc 128
>gb|AC153379.1| Mus musculus 10 BAC RP23-230J20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174195 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tatcaggatcttctatattc 380 |||||||||||||||||||| Sbjct: 143549 tatcaggatcttctatattc 143568
>emb|BX648780.1|HSM808931 Homo sapiens mRNA; cDNA DKFZp686O07132 (from clone DKFZp686O07132) Length = 4021 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 872 ctcgcaacattatgctgttg 891
>emb|BX648561.1|HSM808709 Homo sapiens mRNA; cDNA DKFZp779L1054 (from clone DKFZp779L1054) Length = 3523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 775 ctcgcaacattatgctgttg 794
>dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBL20 Length = 35301 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 aatatttatctgcctgcataatgt 32 |||||||||||| ||||||||||| Sbjct: 27977 aatatttatctgtctgcataatgt 27954
>dbj|AB020692.1| Homo sapiens mRNA for KIAA0885 protein, partial cds Length = 4076 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 945 ctcgcaacattatgctgttg 964
>gb|AF070542.1|AF070542 Homo sapiens clone 24514 unknown mRNA Length = 1511 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcgcaacattatgctgttg 348 |||||||||||||||||||| Sbjct: 535 ctcgcaacattatgctgttg 554
>emb|AL953879.7| Zebrafish DNA sequence from clone CH211-151G18, complete sequence Length = 142739 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ataatgttttcaaaaggata 45 |||||||||||||||||||| Sbjct: 141040 ataatgttttcaaaaggata 141059
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 10 atatttatctgcctgcataatgttttca 37 |||||| |||||||||||||| |||||| Sbjct: 962689 atatttttctgcctgcataatattttca 962716
>gb|BC004580.1| Mus musculus RAB28, member RAS oncogene family, mRNA (cDNA clone MGC:8039 IMAGE:3587008), complete cds Length = 1667 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 tcaaagcttggagcagcttc 398 |||||||||||||||||||| Sbjct: 1177 tcaaagcttggagcagcttc 1158 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,438,605 Number of Sequences: 3902068 Number of extensions: 4438605 Number of successful extensions: 78656 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78480 Number of HSP's gapped (non-prelim): 175 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
