ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41g06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z83827.1|HS473J6 Human DNA sequence from clone RP3-473J6 on chromosome Xq21.1, complete sequence Length = 135686 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 atacataagacagtccacaaga 33 |||||||||||||||||||||| Sbjct: 35623 atacataagacagtccacaaga 35602
>gb|AC161194.14| Mus musculus chromosome 15, clone RP23-345C13, complete sequence Length = 193998 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 catgttgtttcttcttccttc 338 ||||||||||||||||||||| Sbjct: 152903 catgttgtttcttcttccttc 152923
>ref|XM_673646.1| Plasmodium berghei strain ANKA hypothetical protein (PB000737.02.0) partial mRNA Length = 471 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 caagaacaaaatgcatgatga 49 ||||||||||||||||||||| Sbjct: 309 caagaacaaaatgcatgatga 329
>gb|AC012362.7| Homo sapiens BAC clone RP11-404D15 from 2, complete sequence Length = 156618 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 aaaaggaaaatacataagaca 23 ||||||||||||||||||||| Sbjct: 127563 aaaaggaaaatacataagaca 127543
>gb|AC103681.4| Homo sapiens chromosome 11, clone CTD-2560E9, complete sequence Length = 215485 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 tgatctgctttccttgacctc 396 ||||||||||||||||||||| Sbjct: 209995 tgatctgctttccttgacctc 210015
>gb|AC103682.4| Homo sapiens chromosome 11, clone CTD-2604L9, complete sequence Length = 57561 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 tgatctgctttccttgacctc 396 ||||||||||||||||||||| Sbjct: 35232 tgatctgctttccttgacctc 35212
>ref|NM_122704.1| Arabidopsis thaliana mRNA guanylyltransferase/ phosphoprotein phosphatase AT5G28210 mRNA, complete cds Length = 1878 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 taattgtgtctacaaccatc 274 |||||||||||||||||||| Sbjct: 1129 taattgtgtctacaaccatc 1110
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tgtctacaaccatcatgcaa 280 |||||||||||||||||||| Sbjct: 1915326 tgtctacaaccatcatgcaa 1915345
>gb|AC026471.6| Homo sapiens chromosome 16 clone RP11-452L6, complete sequence Length = 186860 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 119405 aggtgatctgcttgccttgacctc 119382
>ref|XM_567023.1| Cryptococcus neoformans var. neoformans JEC21 iron ion homeostasis-related protein (CNA07060) partial mRNA Length = 1772 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tgtctacaaccatcatgcaa 280 |||||||||||||||||||| Sbjct: 1720 tgtctacaaccatcatgcaa 1701
>gb|AC007276.3| Homo sapiens BAC clone RP11-226O1 from 7, complete sequence Length = 172573 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ttgtttcttcttccttctgt 341 |||||||||||||||||||| Sbjct: 135731 ttgtttcttcttccttctgt 135712
>gb|AC152348.7| Medicago truncatula clone mth2-52e17, complete sequence Length = 122070 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ttgtttcttcttccttctgt 341 |||||||||||||||||||| Sbjct: 45306 ttgtttcttcttccttctgt 45325
>emb|AL953889.9| Human DNA sequence from clone RP11-7G23 on chromosome 9 Contains six novel pseudogenes, the FAM27A gene for family with sequence similarity 27, member A, a novel gene and five CpG islands, complete sequence Length = 160730 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 |||||||||||| ||||||||||| Sbjct: 139741 aggtgatctgctctccttgacctc 139764
>emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chromosome 9 Contains two CpG islands, complete sequence Length = 173181 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 |||||||||||| ||||||||||| Sbjct: 12618 aggtgatctgctctccttgacctc 12595
>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six novel pseudogenes, the FAM27B gene for family with sequence similarity 27, member B, a pseudogene similar to part of ribosomal protein L10 (RPL10) and four CpG islands, complete sequence Length = 194246 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 |||||||||||| ||||||||||| Sbjct: 149190 aggtgatctgctctccttgacctc 149213
>emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chromosome 9 Contains five novel pseudogenes, a pseudogene similar to part of ribosomal protein L10 (RPL10) and two CpG islands, complete sequence Length = 182366 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 |||||||||||| ||||||||||| Sbjct: 154475 aggtgatctgctctccttgacctc 154498
>emb|AL390061.9| Human DNA sequence from clone RP11-322I2 on chromosome 10 Contains a novel gene and a pseudogene similar to MAP kinase-interacting serine/threonine kinase 1 (MKNK1), complete sequence Length = 174818 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||||||| |||||| Sbjct: 72872 aggtgatctgctttcctcgacctc 72849
>emb|AL356755.12| Human DNA sequence from clone RP5-964F7 on chromosome 20 Contains the GFRA4 gene for GDNF family receptor alpha 4, the 3' end of the ADAM33 gene for a disintegrin and metalloproteinase domain 33 protein and two CpG islands, complete sequence Length = 23379 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 agaataagaaaagctaacta 256 |||||||||||||||||||| Sbjct: 201 agaataagaaaagctaacta 182
>emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chromosome 9 Contains four novel genes, three novel pseudogenes and two CpG islands, complete sequence Length = 188062 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 |||||||||||| ||||||||||| Sbjct: 181992 aggtgatctgctctccttgacctc 182015
>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete sequence Length = 166509 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 91520 aggtgatctgcttgccttgacctc 91543
>emb|AL353146.9| Human DNA sequence from clone RP11-168O10 on chromosome 10 Contains the IFIT1 gene for interferon-induced protein with tetratricopeptide repeats 1, the 5' end of a variant of the LIPA gene for lipase A lysosomal acid cholesterol esterase (Wolman disease), the gene for retinoic acid- and interferon-inducible protein (58kD) (RI58), a novel gene, the gene for a novel protein similar to monocarboxylate, the 3' end of a novel gene and a CpG island, complete sequence Length = 126887 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cggcatctattagactctta 373 |||||||||||||||||||| Sbjct: 93642 cggcatctattagactctta 93623
>emb|AL139084.9| Human DNA sequence from clone RP11-318G11 on chromosome 13 Contains part of the gene for zizimin1 (KIAA1085) and a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 80803 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 68245 aggtgatctgcttgccttgacctc 68268
>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a novel gene, complete sequence Length = 189495 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ttgtttcttcttccttctgt 341 |||||||||||||||||||| Sbjct: 87098 ttgtttcttcttccttctgt 87117
>emb|AL773537.4| Human DNA sequence from clone RP11-268E1 on chromosome 9 Contains three novel pseudogene, a novel gene, a pseudogene similar to part ofribosomal protein L10 (QM, NOV, DXS648, DXS648E, FLJ23544) (RPL10) and a CpG island, complete sequence Length = 166231 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 |||||||||||| ||||||||||| Sbjct: 57326 aggtgatctgctctccttgacctc 57349
>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence Length = 116158 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ttgtttcttcttccttctgt 341 |||||||||||||||||||| Sbjct: 3747 ttgtttcttcttccttctgt 3728
>gb|AC008706.5| Homo sapiens chromosome 5 clone CTB-77M23, complete sequence Length = 164394 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 70633 aggtgatctgcttgccttgacctc 70656
>gb|AC090971.3| Homo sapiens chromosome 15 clone RP11-56B16 map 15q21.3, complete sequence Length = 192464 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||| |||||||||||| Sbjct: 30464 aggtgatctgccttccttgacctc 30441
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaaaaggaaaatacataaga 21 |||||||||||||||||||| Sbjct: 1051954 aaaaaggaaaatacataaga 1051935
>gb|AC124042.3| Oryctolagus cuniculus clone LB1-56H19, complete sequence Length = 194657 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaaaaggaaaatacataaga 21 |||||||||||||||||||| Sbjct: 49004 aaaaaggaaaatacataaga 48985
>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence Length = 186751 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 63171 aggtgatctgcttgccttgacctc 63148
>gb|AC131009.7| Homo sapiens 12 BAC RP11-417L19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170327 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tcttcttccttctgtgttta 346 |||||||||||||||||||| Sbjct: 7732 tcttcttccttctgtgttta 7751
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tccacaagaacaaaatgcat 44 |||||||||||||||||||| Sbjct: 548495 tccacaagaacaaaatgcat 548476
>gb|AF177535.1|F26C17 Arabidopsis thaliana BAC F26C17 Length = 53537 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 taattgtgtctacaaccatc 274 |||||||||||||||||||| Sbjct: 39674 taattgtgtctacaaccatc 39655
>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208102 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||||||||| |||| Sbjct: 183035 aggtgatctgctttccttggcctc 183012
>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 242832 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||||||||| |||| Sbjct: 85799 aggtgatctgctttccttggcctc 85776
>gb|AF086443.1|HUMZD81C11 Homo sapiens full length insert cDNA clone ZD81C11 Length = 457 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 209 aggtgatctgcttgccttgacctc 232
>emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-442G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162016 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||||||||| |||| Sbjct: 122506 aggtgatctgctttccttggcctc 122483
>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence Length = 206647 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 agaataagaaaagctaacta 256 |||||||||||||||||||| Sbjct: 129691 agaataagaaaagctaacta 129672
>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete sequence Length = 142000 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 aggtgatctgctttccttgacctc 396 ||||||||||||| |||||||||| Sbjct: 70782 aggtgatctgcttgccttgacctc 70805 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,129,637 Number of Sequences: 3902068 Number of extensions: 5129637 Number of successful extensions: 106255 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106128 Number of HSP's gapped (non-prelim): 127 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
