ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN512_MACFA (Q95JV5) Zinc finger protein 512 29 4.9
2DYI2_CHLRE (Q39578) Dynein, 78 kDa intermediate chain, flagellar... 28 8.4

>ZN512_MACFA (Q95JV5) Zinc finger protein 512|
          Length = 565

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 213 KNRTANNIMDGWLQASVEHSPAVTSFRAVFRCQPIMRSNLPPSF 344
           KNRT  +I D   Q ++ H  +++   +   C+P+  S+ P SF
Sbjct: 29  KNRTQCSIKDNSFQYTIPHDDSLSGSSSASSCEPV--SDFPASF 70



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>DYI2_CHLRE (Q39578) Dynein, 78 kDa intermediate chain, flagellar outer arm|
           (IC78)
          Length = 682

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 389 RQPFCTLPPTACLAGACSSW 448
           R+ F   PPTA ++GAC+ W
Sbjct: 183 RETFTEPPPTATVSGACTQW 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,395,838
Number of Sequences: 219361
Number of extensions: 1168763
Number of successful extensions: 3147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3145
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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