ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AZR1_YEAST (P50080) Azole resistance protein 1 31 1.9
2AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 30 3.2
3NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 30 4.1
4VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprot... 30 4.1
5Y148_MYCGE (P47394) Hypothetical protein MG148 30 5.4
6AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 30 5.4
7ASPH_BOVIN (Q28056) Aspartyl/asparaginyl beta-hydroxylase (EC 1.... 29 7.1
8VP19_EBV (P03187) Probable capsid assembly and DNA maturation pr... 29 9.2
9RYR3_HUMAN (Q15413) Ryanodine receptor 3 (Brain-type ryanodine r... 29 9.2

>AZR1_YEAST (P50080) Azole resistance protein 1|
          Length = 613

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 155 FHVTLPLGFMYCFVYLLVYLRGSGDY--TSSNVMCFSNNFVLLCRSICVILL 6
           F+V LP+G +  F++L  Y  G   +  T  N+  F + F+ + R++   LL
Sbjct: 224 FYVNLPIGGLAFFLFLFFYNPGLSTFQETMDNIRKFPSQFIEIVRNVAYHLL 275



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>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 174  YFFFLRIPRYITTWVYVLLCLFVSLFARV 88
            YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085



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>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 580

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 173 TFFSFVFHVTLPLGFMYCFVYLLVYLRGSGDYTSSNVMCFSNNFVLLCRSICVILLL 3
           +FF F F      G   C+ + LVY   +GD+ SS++   +++   +  SIC + ++
Sbjct: 381 SFFLFFFST----GLTVCYSFRLVYYSMTGDFNSSSLHPLNDSGWTMLFSICFLTVM 433



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>VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprotein G2;|
           Nonstructural protein NS-M; Glycoprotein G1]
          Length = 1441

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
 Frame = -3

Query: 180 ISYFFFLRIPRYITTWVYVLLCLFVSL--------FARVGRLYEQQCDVF 55
           I++++F+ I  Y  TW  +++ L + L        F+ +  +Y ++CD++
Sbjct: 354 INFYYFVCIMNYAVTWGLIIIGLLIGLLFKKYQHRFSNLYAMYCEECDMY 403



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>Y148_MYCGE (P47394) Hypothetical protein MG148|
          Length = 409

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +1

Query: 37  KTKLLEKHITLLLV*SPDPRK*TNK*TKQYINPSGNVTWNTKEKKVGNGRALHVT---HH 207
           KT L +K   LLL    + +    K  + YIN    +    KE ++ N + L  +     
Sbjct: 78  KTMLNDKEQALLLKTKLELQNQFQKQIENYINEINKLKLTNKELEITNQKQLESSLKLQR 137

Query: 208 TQYREQINQSN*TTKSTRRRPAVRTSI 288
            ++ E+INQ N T +  + + A R+SI
Sbjct: 138 NEFEEKINQQNLTIEKLKIQQA-RSSI 163



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>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 174 YFFFLRIPRYITTWVYVLLCLFVSLFARV 88
           YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313



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>ASPH_BOVIN (Q28056) Aspartyl/asparaginyl beta-hydroxylase (EC 1.14.11.16)|
           (Aspartate beta-hydroxylase) (ASP beta-hydroxylase)
           (Peptide-aspartate beta-dioxygenase)
          Length = 754

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 446 HARGGGGNVGTASSSGLRPCPAGGRPPP 529
           +A+GGGGN  ++SS     C +GG   P
Sbjct: 6   NAKGGGGNSSSSSSGSPTGCTSGGSSSP 33



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>VP19_EBV (P03187) Probable capsid assembly and DNA maturation protein|
           (Capsid protein VP19C)
          Length = 364

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 455 GGGGNVGTASSSGLRPCPAGGR 520
           GGGG V      GL+PCPA  R
Sbjct: 242 GGGGGVCFVGGLGLQPCPADAR 263



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>RYR3_HUMAN (Q15413) Ryanodine receptor 3 (Brain-type ryanodine receptor)|
           (RyR3) (RYR-3) (Brain ryanodine receptor-calcium release
           channel)
          Length = 4870

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 470 VGTASSSGLRPCPAGG 517
           VG ASSSG  PCP GG
Sbjct: 682 VGWASSSGYAPCPGGG 697


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,037,896
Number of Sequences: 219361
Number of extensions: 1098577
Number of successful extensions: 4059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3981
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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