Clone Name | rbart41g01 |
---|---|
Clone Library Name | barley_pub |
>AZR1_YEAST (P50080) Azole resistance protein 1| Length = 613 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -1 Query: 155 FHVTLPLGFMYCFVYLLVYLRGSGDY--TSSNVMCFSNNFVLLCRSICVILL 6 F+V LP+G + F++L Y G + T N+ F + F+ + R++ LL Sbjct: 224 FYVNLPIGGLAFFLFLFFYNPGLSTFQETMDNIRKFPSQFIEIVRNVAYHLL 275
>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)| (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase class VI type 11C) Length = 1132 Score = 30.4 bits (67), Expect = 3.2 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = -3 Query: 174 YFFFLRIPRYITTWVYVLLCLFVSLFARV 88 YF F ++ ++TW+ ++L +F+SLF + Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085
>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 580 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/57 (28%), Positives = 30/57 (52%) Frame = -1 Query: 173 TFFSFVFHVTLPLGFMYCFVYLLVYLRGSGDYTSSNVMCFSNNFVLLCRSICVILLL 3 +FF F F G C+ + LVY +GD+ SS++ +++ + SIC + ++ Sbjct: 381 SFFLFFFST----GLTVCYSFRLVYYSMTGDFNSSSLHPLNDSGWTMLFSICFLTVM 433
>VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprotein G2;| Nonstructural protein NS-M; Glycoprotein G1] Length = 1441 Score = 30.0 bits (66), Expect = 4.1 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 8/50 (16%) Frame = -3 Query: 180 ISYFFFLRIPRYITTWVYVLLCLFVSL--------FARVGRLYEQQCDVF 55 I++++F+ I Y TW +++ L + L F+ + +Y ++CD++ Sbjct: 354 INFYYFVCIMNYAVTWGLIIIGLLIGLLFKKYQHRFSNLYAMYCEECDMY 403
>Y148_MYCGE (P47394) Hypothetical protein MG148| Length = 409 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = +1 Query: 37 KTKLLEKHITLLLV*SPDPRK*TNK*TKQYINPSGNVTWNTKEKKVGNGRALHVT---HH 207 KT L +K LLL + + K + YIN + KE ++ N + L + Sbjct: 78 KTMLNDKEQALLLKTKLELQNQFQKQIENYINEINKLKLTNKELEITNQKQLESSLKLQR 137 Query: 208 TQYREQINQSN*TTKSTRRRPAVRTSI 288 ++ E+INQ N T + + + A R+SI Sbjct: 138 NEFEEKINQQNLTIEKLKIQQA-RSSI 163
>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)| (Fragment) Length = 347 Score = 29.6 bits (65), Expect = 5.4 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = -3 Query: 174 YFFFLRIPRYITTWVYVLLCLFVSLFARV 88 YF F ++ ++TW+ ++L +F+SLF + Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313
>ASPH_BOVIN (Q28056) Aspartyl/asparaginyl beta-hydroxylase (EC 1.14.11.16)| (Aspartate beta-hydroxylase) (ASP beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) Length = 754 Score = 29.3 bits (64), Expect = 7.1 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 446 HARGGGGNVGTASSSGLRPCPAGGRPPP 529 +A+GGGGN ++SS C +GG P Sbjct: 6 NAKGGGGNSSSSSSGSPTGCTSGGSSSP 33
>VP19_EBV (P03187) Probable capsid assembly and DNA maturation protein| (Capsid protein VP19C) Length = 364 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 455 GGGGNVGTASSSGLRPCPAGGR 520 GGGG V GL+PCPA R Sbjct: 242 GGGGGVCFVGGLGLQPCPADAR 263
>RYR3_HUMAN (Q15413) Ryanodine receptor 3 (Brain-type ryanodine receptor)| (RyR3) (RYR-3) (Brain ryanodine receptor-calcium release channel) Length = 4870 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = +2 Query: 470 VGTASSSGLRPCPAGG 517 VG ASSSG PCP GG Sbjct: 682 VGWASSSGYAPCPGGG 697 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,037,896 Number of Sequences: 219361 Number of extensions: 1098577 Number of successful extensions: 4059 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3981 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)