ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCNK6_HUMAN (Q9Y257) Potassium channel subfamily K member 6 (Inw... 28 5.7
2PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plas... 27 9.7

>KCNK6_HUMAN (Q9Y257) Potassium channel subfamily K member 6 (Inward rectifying|
           potassium channel protein TWIK-2) (TWIK-originated
           similarity sequence)
          Length = 313

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 18  VVLFTGK*QRFSLIVQHVIPSWIFIQW 98
           ++L T   QR SL++ HV  SW+ ++W
Sbjct: 135 MLLLTASAQRLSLLLTHVPLSWLSMRW 161



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>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane|
           sodium response protein 2)
          Length = 397

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 131 EFDFRKLTHLQP-LYEDPGRDNML 63
           E DF  LTHLQP  Y  PG D +L
Sbjct: 194 EEDFSDLTHLQPDQYHAPGYDTLL 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,206,732
Number of Sequences: 219361
Number of extensions: 842748
Number of successful extensions: 1874
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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