ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479034.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.025
5ref|XM_479039.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
6dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
7dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
8dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
9ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antige... 42 1.6
10gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 1.6
11gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, comple... 42 1.6
12gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome... 42 1.6
13emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on ch... 42 1.6
14gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Can... 42 1.6
15gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mR... 40 6.2
16ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.2
17ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
18gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
19ref|XM_949319.1| Theileria annulata strain Ankara serine proteas... 40 6.2
20gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, comp... 40 6.2
21emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chr... 40 6.2
22gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
23gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, com... 40 6.2
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
25dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.2
26dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
27dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
29gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, com... 40 6.2 
>ref|XM_479034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 776

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 229 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 279
           ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 466
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 229      tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 279
                ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 24424060 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 24424110



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 226      cgatcatggcttggcctctggctc 249
                ||||||||||||||||||||||||
Sbjct: 24434446 cgatcatggcttggcctctggctc 24434469



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                            
Query: 310      ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 369
                |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 24416988 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 24417044

                                  
Query: 370      tggcacctcggggtgcgg 387
                 |||||  ||||||||||
Sbjct: 24417045 cggcacgacggggtgcgg 24417062
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>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_B10
          Length = 100294

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 229   tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 279
             ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 49927 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 49977



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 226   cgatcatggcttggcctctggctc 249
             ||||||||||||||||||||||||
Sbjct: 60313 cgatcatggcttggcctctggctc 60336



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                         
Query: 310   ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 369
             |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 42855 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 42911

                               
Query: 370   tggcacctcggggtgcgg 387
              |||||  ||||||||||
Sbjct: 42912 cggcacgacggggtgcgg 42929
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>ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.120
           mRNA
          Length = 629

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 226 cgatcatggcttggcctctggctc 249
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>ref|XM_479039.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 629

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 226 cgatcatggcttggcctctggctc 249
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C08, full
           insert sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 226 cgatcatggcttggcctctggctc 249
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H05, full
           insert sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 226 cgatcatggcttggcctctggctc 249
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
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>dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040D08, full
           insert sequence
          Length = 776

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 229 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 279
           ||||||||||||||| ||||| || || |||||| | |||||||| |||||
Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactctggcttcggcggcaa 466
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>ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antigen 3 (LOC515399),
            partial mRNA
          Length = 3164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 66   acagattgagcagctgcacca 86
            |||||||||||||||||||||
Sbjct: 1719 acagattgagcagctgcacca 1739
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 60      aaaggaacagattgagcagct 80
               |||||||||||||||||||||
Sbjct: 4032147 aaaggaacagattgagcagct 4032127
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>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence
          Length = 209671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     catgaatatacataaaaggaa 66
              |||||||||||||||||||||
Sbjct: 128297 catgaatatacataaaaggaa 128277
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>gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome 16, complete sequence
          Length = 200016

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     atgcatatacatcatgaatat 54
              |||||||||||||||||||||
Sbjct: 104456 atgcatatacatcatgaatat 104436
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>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete
              sequence
          Length = 201738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 52     tatacataaaaggaacagattgagc 76
              |||| ||||||||||||||||||||
Sbjct: 103112 tatatataaaaggaacagattgagc 103136
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>gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170723

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     atatcatgcatatacatcatg 49
              |||||||||||||||||||||
Sbjct: 135297 atatcatgcatatacatcatg 135277
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>gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mRNA, complete cds
          Length = 4494

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  tcggcacctctggcacctcg 379
            ||||||||||||||||||||
Sbjct: 1124 tcggcacctctggcacctcg 1143
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>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112
           mRNA
          Length = 1006

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 310 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 369
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 548 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 492

                             
Query: 370 tggcacctcggggtgcgg 387
            |||||  ||||||||||
Sbjct: 491 cggcacgacggggtgcgg 474
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>ref|XM_479031.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 310 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 369
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 545 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 489

                             
Query: 370 tggcacctcggggtgcgg 387
            |||||  ||||||||||
Sbjct: 488 cggcacgacggggtgcgg 471
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>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15,
              complete sequence
          Length = 126156

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 387    gcacatggggctcctttggcacct 410
              ||||||||| ||||||||||||||
Sbjct: 103433 gcacatgggcctcctttggcacct 103456
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>ref|XM_949319.1| Theileria annulata strain Ankara serine protease (TA21265) partial
           mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 tggtgtggcatttcaggctt 441
           ||||||||||||||||||||
Sbjct: 834 tggtgtggcatttcaggctt 853
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>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence
          Length = 134538

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    tgcatatcatgcatatacat 45
             ||||||||||||||||||||
Sbjct: 13943 tgcatatcatgcatatacat 13924
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>emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chromosome 1 Contains the
             3' end of the NPHP4 gene for nephronophthisis 4, complete
             sequence
          Length = 72610

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    atgtgcatatcatgcatata 42
             ||||||||||||||||||||
Sbjct: 57118 atgtgcatatcatgcatata 57099
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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 387   gcacatggggctcctttggcacct 410
             ||||||||| ||||||||||||||
Sbjct: 37277 gcacatgggcctcctttggcacct 37300
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>gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, complete sequence
          Length = 149059

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ctcctttggcacctctggca 416
             ||||||||||||||||||||
Sbjct: 98369 ctcctttggcacctctggca 98388
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 387     gcacatggggctcctttggcacct 410
               ||||||||| ||||||||||||||
Sbjct: 6253999 gcacatgggcctcctttggcacct 6254022
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>dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21I16
          Length = 30578

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   aaacagaaacatacttattcatgt 26
           |||||||||||||||| |||||||
Sbjct: 701 aaacagaaacatactttttcatgt 724
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>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full
           insert sequence
          Length = 1005

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 310 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 369
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 545 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 489

                             
Query: 370 tggcacctcggggtgcgg 387
            |||||  ||||||||||
Sbjct: 488 cggcacgacggggtgcgg 471
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>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full
           insert sequence
          Length = 1006

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 310 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 369
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 548 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 492

                             
Query: 370 tggcacctcggggtgcgg 387
            |||||  ||||||||||
Sbjct: 491 cggcacgacggggtgcgg 474
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 387     gcacatggggctcctttggcacct 410
               ||||||||| ||||||||||||||
Sbjct: 6320466 gcacatgggcctcctttggcacct 6320489
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>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence
          Length = 215819

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    atgaatatacataaaaggaa 66
             ||||||||||||||||||||
Sbjct: 63341 atgaatatacataaaaggaa 63322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,429,881
Number of Sequences: 3902068
Number of extensions: 3429881
Number of successful extensions: 66835
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 66715
Number of HSP's gapped (non-prelim): 124
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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