ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLPT_HAEIN (P96335) Glycerol-3-phosphate transporter (G-3-P tran... 29 6.6
2L_NDVB (P11205) Large structural protein (Protein L) (Transcript... 28 8.6
3PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog) 28 8.6
4PCX1_MOUSE (Q9QYC1) Pecanex-like protein 1 (Pecanex homolog) (Fr... 28 8.6

>GLPT_HAEIN (P96335) Glycerol-3-phosphate transporter (G-3-P transporter)|
           (G-3-P permease)
          Length = 480

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 426 VYILYVIQSV*LVLISCEQVFIYFESFGIQRWS 328
           +++ YV+++  L  I+   VF+Y   +G+ +WS
Sbjct: 257 IFVTYVLKNKLLWYIAIANVFVYLIRYGVLKWS 289



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>L_NDVB (P11205) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2204

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 211  LVI*GLHVQYILFPLILGRREYKLHYLCPKELS*ICLAMYVSNAK-MYLDTSVMYLDKCM 35
            LV+ G+     L PL    R Y  H  CPK L  +   + ++  K M+ DTSV+YL +  
Sbjct: 2131 LVLKGMISMEDLIPL----RTYLKHSTCPKYLKAV---LGITKLKEMFTDTSVLYLTRAQ 2183

Query: 34   TELF 23
             + +
Sbjct: 2184 QKFY 2187



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>PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog)|
          Length = 2341

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 452  QSLWSDVWVFTFCMLFSQC 396
            Q  + D+WVF FC++ + C
Sbjct: 1026 QGFFRDIWVFQFCLVIASC 1044



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>PCX1_MOUSE (Q9QYC1) Pecanex-like protein 1 (Pecanex homolog) (Fragment)|
          Length = 1460

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 452 QSLWSDVWVFTFCMLFSQC 396
           Q  + D+WVF FC++ + C
Sbjct: 145 QGFFRDIWVFQFCLVIASC 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,271,582
Number of Sequences: 219361
Number of extensions: 1183026
Number of successful extensions: 2474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2473
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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