ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HRK1_YEAST (Q08732) Serine/threonine-protein kinase HRK1 (EC 2.7... 30 2.8
2METX_ZYMMO (Q5NR05) Homoserine O-acetyltransferase (EC 2.3.1.31)... 29 8.2
3PURL_PYRHO (O59621) Phosphoribosylformylglycinamidine synthase I... 29 8.2

>HRK1_YEAST (Q08732) Serine/threonine-protein kinase HRK1 (EC 2.7.11.1)|
           (Hygromycin resistance kinase 1)
          Length = 759

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -1

Query: 446 SVKVLAPRRP----RQLARMVVAMQCLGLTVLHPNATATAD 336
           +VK   PR+P    ++ A+   A  C+G T+ HPN   T D
Sbjct: 242 AVKEFRPRKPNESVKEYAKKCTAEFCIGSTLHHPNVIETVD 282



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>METX_ZYMMO (Q5NR05) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 373

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 325 KTSWSAVAVAFGWSTVSPRHCI-ATTILASCLGRRGASTFT 444
           K  W +  +  G      R+CI  + +L SCLG  G S+FT
Sbjct: 69  KPGWWSRMIGKGKPIDPERYCIICSNVLGSCLGSTGPSSFT 109



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>PURL_PYRHO (O59621) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 705

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -1

Query: 476 VEVALAESHASVKVLAPRRPRQLARMVVAMQCLGLTVLHPNATATADQLVFYSFSLRMED 297
           VE A +ESH    V+ P R  + AR +  ++ +G  ++  N           SFS+++ D
Sbjct: 635 VEFAFSESHGRYLVVLPERKLEEAREITDLKVIG-RIIGSN-----------SFSVKIND 682

Query: 296 ECRLSSVEEI 267
           E  L +++++
Sbjct: 683 EVLLWNLDKL 692


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,713,631
Number of Sequences: 219361
Number of extensions: 799485
Number of successful extensions: 1617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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