>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = -1

Query: 486 GSPATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSG 334
           G PA  ++  ARRRS    ++S+ +RT SS+R+   +S+ +    G+ RSG
Sbjct: 348 GGPAPGRNASARRRSSSSSSSSSASRT-SSSRSSSRSSSRSRRGGGYYRSG 397

>CG010_HUMAN (Q9HAC7) Protein C7orf10 (Dermal papilla-derived protein 13)|
          Length = 445

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
 Frame = -3

Query: 478 SDYAGW-AGASAEWKMLYSIGKD-----KDGLLRKDAARGVYD-GSLFARVVQERRT--- 329
           S  AG+ A ASA   +++  G +     + G+   D A G+Y  G++ A ++Q+ +T   
Sbjct: 177 SQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGLYAYGAIMAGLIQKYKTGKG 236

Query: 328 --------SSQEETQA*WVVRFIGGRHCPKRWRPV*TLESVRTDASLARYRALRTSNNYL 173
                   SSQ    +     ++ G+   KRW             S+  Y+A +T + Y+
Sbjct: 237 LFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTA--------HGSIVPYQAFKTKDGYI 288

Query: 172 SGVIGSSRHAVTVCR 128
               G+++   TVC+
Sbjct: 289 VVGAGNNQQFATVCK 303

>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
 Frame = -1

Query: 453  RRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHD-----GLFG 289
            +RRS  C   S  +   S+AR P G+       PG   S G       R       G  G
Sbjct: 864  QRRSSSC--GSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSASQGAGSRG 921

Query: 288  SSEGVTVPSDGG---QSE----------HSSPSELMRRWLGTEHYVRVIITY 172
             SE  T+ S GG   Q E           SSP  ++R WL       +++TY
Sbjct: 922  LSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMTY 973

>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -1

Query: 480 PATTQDGRARRRSG--RC--CTASARTRTGSSARTPPGASTMAASSPGWCRS 337
           P+T  DG+   + G  +C  C    R++ G + R     S     SPGWC +
Sbjct: 706 PSTCPDGKCENKPGSFKCIACQPGYRSQGGGACRDVNECSEGTPCSPGWCEN 757

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/87 (25%), Positives = 34/87 (39%)
 Frame = -1

Query: 483  SPATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRH 304
            +PA    G      G   ++ A T++GSS ++  G  +  + S G+  S        P  
Sbjct: 835  APAPAAAGAPSGLPGSGPSSPASTKSGSSTKSSSGTKSGLSGSSGYASSPAAGPDPAPER 894

Query: 303  DGLFGSSEGVTVPSDGGQSEHSSPSEL 223
                  + G   P DG + E  S S L
Sbjct: 895  RKKKRRAPGARRPGDGEEDEGLSGSAL 921

>DDX31_HUMAN (Q9H8H2) Probable ATP-dependent RNA helicase DDX31 (EC 3.6.1.-)|
           (DEAD box protein 31) (Helicain)
          Length = 851

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
 Frame = -1

Query: 480 PATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHD 301
           P     GR  RR G       R     +   PP  + +  S   W RSG       P   
Sbjct: 21  PNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGTSPYSWSRSG-------PGRG 73

Query: 300 GLFGSSE------GVTVPSDGGQSEHSSPSELM 220
           G  GSS       G  V + G    H+SP++ M
Sbjct: 74  GGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTM 106

>Y575_WOLSU (Q7M9Z1) UPF0323 lipoprotein WS0575 precursor|
          Length = 217

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -1

Query: 411 RTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHDGLFGSSEGVTVPSDGGQSEHSSP 232
           ++ SSA  P G ST A+S+P   +             G FGSS   +       S  SSP
Sbjct: 166 KSSSSATAPRGTSTGASSTPSSAKG------------GYFGSSSSPSSAPSSSSSSSSSP 213

Query: 231 S 229
           S
Sbjct: 214 S 214

>MURD_AZOSE (Q5P6Z4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 466

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 435 CCTASARTRTGSSARTPPGASTMAASSP 352
           C    AR R   S +TPPG  T+ A +P
Sbjct: 25  CALRGARLRVADSRQTPPGLDTLRADAP 52

>RNF12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain-interacting RING finger|
           protein) (RING finger LIM domain-binding protein)
           (R-LIM) (NY-REN-43 antigen)
          Length = 624

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = -1

Query: 489 TGSPATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKP 310
           TGS +     RA  RSGR  +    +   SS+ +   +S+ ++SS     S       + 
Sbjct: 429 TGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSET 488

Query: 309 RHDGLFGSSEGVTVPSDGG---QSEHSSP 232
             D   GS+EG +     G   +  H +P
Sbjct: 489 SSDLFEGSNEGSSSSGSSGARREGRHRAP 517

>MAGD4_HUMAN (Q96JG8) Melanoma-associated antigen D4 (MAGE-D4 antigen) (MAGE-E1|
           antigen)
          Length = 741

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -1

Query: 480 PATTQDGRARRRS------GRCCTASARTRTGSSARTPPGASTMAA--SSPGWCRSGGXX 325
           P TT+ G+A  ++           A+A+ +  +S   P GA+   A  S+  W R GG  
Sbjct: 286 PKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPEGAAAATAQHSAEPWARMGGKR 345

Query: 324 XXXKPRHDGLFGSSE 280
                  D  + SSE
Sbjct: 346 TKKSKHLDDEYESSE 360

>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis pigmentosa|
            1-like protein 1)
          Length = 1859

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 29/120 (24%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
 Frame = -1

Query: 483  SPATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRH 304
            SP     G+ +      C   +     S   TPP   T          S G       R 
Sbjct: 835  SPLAAPSGQTQTSISEACLGGS-----SFCPTPPKEQTCFGRESA---SNGSTSSGHSRA 886

Query: 303  DGLFGSSEGVTVPS------------DGGQSE----HSSPSELMRRWLGTEHYVRVIITY 172
            DG  G    + V S            DGG +     ++SP  ++R WLG      V++TY
Sbjct: 887  DGFAGPRRTLLVKSPGVRGSLEEREADGGVTPSALPYASPDAVVREWLGNIPEKPVLMTY 946

>HSP22_ORYSA (Q84J50) 17.4 kDa class I heat shock protein 2|
          Length = 159

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -3

Query: 487 RQPSDYAGWAGASAEWK---MLYSIGKDKDGLLRKDAARGVYDGSLFARVVQERRTSSQE 317
           R  SD A +AGA  +WK    ++    D  GL +++    V DG++    +   R+  QE
Sbjct: 41  RANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQ--ISGERSREQE 98

Query: 316 ETQA*W 299
           E    W
Sbjct: 99  EKSDKW 104

>CXA3_BOVIN (P41987) Gap junction alpha-3 protein (Connexin-44) (Cx44)|
          Length = 406

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
 Frame = -1

Query: 486 GSPATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPR 307
           G+P    +   R R+       A  +T S   +PP  +  AA SPG    GG        
Sbjct: 301 GTPGGGGNQGLRARAQNWANREAEPQTSSRKASPPAPTPPAAESPG----GGPQQSLPEG 356

Query: 306 HDGLFGSSEG---VTV---------PSDGGQSEHSSPS 229
             G  G S+G   VT          P+D G+S  +S S
Sbjct: 357 AAGSSGDSDGEGAVTAVELHAPPEPPADPGRSSKASKS 394

>PAR3_CAEEL (Q17353) Partitioning defective protein 3 (Abnormal embryonic|
            partitioning of cytoplasm protein 3)
          Length = 1379

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
 Frame = -1

Query: 480  PATTQDGRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHD 301
            P +     A  R GR  ++ A     SS      A    A +     +GG      PRH 
Sbjct: 1275 PVSGSSASATDRRGRSTSSGAVASGSSSTGFQYAAKEKYADARSGKFNGGSTRLFIPRHG 1334

Query: 300  G-----LFGSSEGVTVPSDGGQSEHSSPSELMRRWLGTEH 196
            G      F ++ G       G     SPS+  RR  G  H
Sbjct: 1335 GGLSAAAFATNFGGEAYETRGGGAGGSPSQYRRRDQGPPH 1374

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 466 GWAGASAEWKMLYSIGKDKDGLLRKDAARGVYDGSLFARVVQERRTSSQE 317
           G  G SA+ K L+  G  +D    ++  +  +DGS+ AR+V +R T + +
Sbjct: 493 GGRGGSAQSKTLFVRGLSED--TTEETLKEAFDGSVNARIVTDRDTGASK 540

>KPYR_MOUSE (P53657) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (L-PK)|
          Length = 574

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 306 HDGLFGSSEGVTVPSDGGQSEHSSPSELMRRWLGTEHYVRVI 181
           H G  G+ +GV +P+        S  +L+    G EHYV +I
Sbjct: 242 HGGFLGNRKGVNLPNAEVDLPGLSEQDLLDLRFGVEHYVDII 283

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 462 GRARRRSGRCCTASARTRTGSSARTPPGASTMAASSP 352
           GR RRRS    + S+ + + S +R+PP       SSP
Sbjct: 343 GRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSP 379

>TCEA3_HUMAN (O75764) Transcription elongation factor A protein 3 (Transcription|
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 348

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 233 GLECSDWPPSLGTVTPSDEPNNP 301
           GLECSDW P  G   P  +  +P
Sbjct: 102 GLECSDWKPEAGLSPPRKKREDP 124

>P80C_HUMAN (P38432) Coilin (p80)|
          Length = 576

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 393 RTPPGASTMAASSPGWCRSGGXXXXXKPRHDGLFGSSEGVTVPSDGGQ 250
           R  PG S+  A + GW RSG       P      G+S  V++P+  G+
Sbjct: 352 RPGPGLSSQTAGAAGWRRSGSNGGGQAP------GASPSVSLPASLGR 393


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,051,677
Number of Sequences: 219361
Number of extensions: 1275425
Number of successful extensions: 3925
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3899
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)