>NU2M_DUGDU (Q8W9N5) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +2

Query: 71  SILLQLHARLTQS-LNTCLRITKFCYHAYTQICIDY---LILLNILTKIQ*RLIIFYIVV 238
           SIL+     L Q+ L   L  +   +  +  I + Y   L +LN+L  I   L IF I++
Sbjct: 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMLIIMPYNPSLTILNLLIYILMTLSIFMIMM 220

Query: 239 SQHSIAHPSLRKLWNMFDLQMVI 307
           + HS +  +L  LWN   + M++
Sbjct: 221 NNHSTSTLTLALLWNKAPMMMIL 243

>LY75_MOUSE (Q60767) Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen)|
          Length = 1723

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -3

Query: 516  NSVYAW*QNLMILSRRHVFKLPVNLACSCNKLNKLASWFNLQNQYEELNVLPFIAIFVKK 337
            NS Y    N MI + RH    P  +  +C KL+  A   +++N+ E          FV +
Sbjct: 1254 NSCY----NFMITNNRHKTVTPEEVQSTCEKLHPKAHSLSIRNEEEN--------TFVVE 1301

Query: 336  YSLHFAYI 313
              L+F YI
Sbjct: 1302 QLLYFNYI 1309

>FYV1_MOUSE (Q9Z1T6) FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68)|
            (1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K)
            (PtdIns(4)P-5-kinase) (PIKfyve) (p235)
          Length = 2052

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 357  IAIFVKKYSLHFAYICPITICKSNMFQSLRR 265
            + IF+++Y   ++Y CP   C + M   +RR
Sbjct: 1209 LGIFLERYCFRYSYQCPSMFCDTPMVHHIRR 1239

>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
            (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
            morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 415  LIQFITTACEINRKLEYMSSAENH*ILLPCIYRI 516
            ++Q++TT    NR  EYM SA+ +  +LP  +R+
Sbjct: 2773 ILQYLTTLTSYNRLAEYMFSAKKNSNILPHPWRL 2806


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,409,129
Number of Sequences: 219361
Number of extensions: 1376535
Number of successful extensions: 2564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2564
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)