ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41e09 |
|---|---|
| Clone Library Name | barley_pub |
>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor| Length = 4010 Score = 34.3 bits (77), Expect = 0.076 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 15/90 (16%) Frame = -2 Query: 323 CFRCSV*STLLLDLSCAR---DGFQCRRLLSCQLCVQTCFSCSV*S---------TLLLD 180 C C +L D SC +GF R+ +C C Q+C SC S T+L D Sbjct: 527 CMACRDPLQVLRDSSCENTCGNGFYNRQG-TCVACDQSCKSCGPSSPRCLSCAEKTILHD 585 Query: 179 LSCTRD---GFQCRRLLSCQLCVQTCFSCS 99 C + G+ SC++C +C SCS Sbjct: 586 GKCISECPHGYYADSTGSCKVCHSSCASCS 615
>PCSK5_BRACL (Q9NJ15) Proprotein convertase subtilisin/kexin type 5 precursor (EC| 3.4.21.-) (Proprotein convertase PC6-like) (aPC6) Length = 1696 Score = 32.0 bits (71), Expect = 0.38 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 17/95 (17%) Frame = -2 Query: 245 LSCQLCVQTCFSCSV*STLLLD---------------LSCTRDGFQCRRLLSCQLCVQTC 111 LSC+ C Q+C +CS S D SC + RR C+ C TC Sbjct: 1233 LSCRPCHQSCKTCSGPSDTDCDSCKGDDTILDRGECITSCGPGEYMDRREKKCKACHPTC 1292 Query: 110 FSCSV*STLLLDLSCT--RDGFQCRRLLSCHLCVP 12 CS D +CT DGF SC P Sbjct: 1293 KECSD----EYDDTCTACNDGFLLTDASSCEAGCP 1323
>SAS6_BRARE (Q7ZVT3) Spindle assembly abnormal protein 6 homolog| Length = 627 Score = 29.6 bits (65), Expect = 1.9 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = +3 Query: 99 TAAKTSLHTQ-LTTEQSSALETISRAR*IQQ*SRLNTAAKTSLH--TQLTTEQSSALETI 269 T + +S H Q LT E+ ALET SR + QQ +L ++S H TQ + S LET Sbjct: 207 TTSLSSRHMQDLTAEREKALETQSRLQ--QQNEQLRQELESSHHRSTQQLQTKVSELETA 264 Query: 270 SR 275 +R Sbjct: 265 NR 266
>Y533_TROW8 (P67324) UPF0168 protein TW533| Length = 147 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = -2 Query: 218 CFSCSV*STLLLDLSCTRDGFQCRRLLSCQLCVQTCFSCSV*STLLLDLSCTRDGFQCRR 39 C C T ++D + DG RR CQLC + + S ++ + T + F+ + Sbjct: 3 CLFCRSDDTKVIDSRTSEDGISIRRRRECQLCKRRFSTLETASLTVIKRNGTSEPFRREK 62 Query: 38 LLS 30 +++ Sbjct: 63 VVT 65 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = -2 Query: 323 CFRCSV*STLLLDLSCARDGFQCRRLLSCQLCVQTCFSCSV*STLLLDLSCTRDGFQCRR 144 C C T ++D + DG RR CQLC + + S ++ + T + F+ + Sbjct: 3 CLFCRSDDTKVIDSRTSEDGISIRRRRECQLCKRRFSTLETASLTVIKRNGTSEPFRREK 62 Query: 143 LLS 135 +++ Sbjct: 63 VVT 65
>Y237_TROWT (P67323) UPF0168 protein TWT_237| Length = 147 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = -2 Query: 218 CFSCSV*STLLLDLSCTRDGFQCRRLLSCQLCVQTCFSCSV*STLLLDLSCTRDGFQCRR 39 C C T ++D + DG RR CQLC + + S ++ + T + F+ + Sbjct: 3 CLFCRSDDTKVIDSRTSEDGISIRRRRECQLCKRRFSTLETASLTVIKRNGTSEPFRREK 62 Query: 38 LLS 30 +++ Sbjct: 63 VVT 65 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = -2 Query: 323 CFRCSV*STLLLDLSCARDGFQCRRLLSCQLCVQTCFSCSV*STLLLDLSCTRDGFQCRR 144 C C T ++D + DG RR CQLC + + S ++ + T + F+ + Sbjct: 3 CLFCRSDDTKVIDSRTSEDGISIRRRRECQLCKRRFSTLETASLTVIKRNGTSEPFRREK 62 Query: 143 LLS 135 +++ Sbjct: 63 VVT 65
>STAM2_MOUSE (O88811) Signal transducing adapter molecule 2 (STAM-2)| (Hrs-binding protein) Length = 523 Score = 27.7 bits (60), Expect = 7.1 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +3 Query: 15 HTQMTTEQSSALETISRAR*IQQ*SRLNTAAKTSLHTQ---LTTEQSSALETIS 167 HT S+ +T+S + Q SRL AA T+ +TQ ++T+ SS T S Sbjct: 440 HTVQPPYLSTGQDTVSNPSYMNQSSRLQAAAGTAAYTQPVGMSTDVSSFQNTAS 493
>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)| Length = 5635 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 13/73 (17%) Frame = -2 Query: 284 LSCARDGFQCRRLLSCQLCVQTCFSCSV*STLLLDLSC----------TRDGFQCRRLLS 135 L+ A DG C+ + C L TC + + C T DG C+ + Sbjct: 5136 LTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINE 5195 Query: 134 CQ---LCVQTCFS 105 CQ C Q CF+ Sbjct: 5196 CQESSPCHQRCFN 5208
>LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 gamma 2| subunit) (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t chain) Length = 1191 Score = 27.3 bits (59), Expect = 9.3 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Frame = -2 Query: 218 CFSCSV*STLLLDLSCTRDGFQCRRLLSCQLCV--QTCFSCSV*STLLLDLSCTRDGFQC 45 C C+ S L C G QCR C+ V Q C C +L D CTRD Q Sbjct: 81 CLPCNCHSKGSLSAGCDNSG-QCR----CKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQL 135 Query: 44 RRLLSC 27 C Sbjct: 136 DSKCDC 141 Score = 27.3 bits (59), Expect = 9.3 Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Frame = -2 Query: 350 FYSMMRSITCFRCSV*STLLLDLSCARDGFQCRRLLSCQLCV--QTCFSCSV*STLLLDL 177 FY C C+ S L C G QCR C+ V Q C C +L D Sbjct: 72 FYRHRDRDRCLPCNCHSKGSLSAGCDNSG-QCR----CKPGVTGQRCDRCQPGFHMLTDA 126 Query: 176 SCTRDGFQCRRLLSC 132 CTRD Q C Sbjct: 127 GCTRDQGQLDSKCDC 141
>PYC_PICPA (P78992) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic carboxylase)| (PCB) Length = 1189 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 303 LNTAPKTSYASHHRIK*DLW 362 LN AP TSYA HH + W Sbjct: 584 LNIAPATSYALHHAFALECW 603
>Y1375_MANSM (Q65SS8) UPF0168 protein MS1375| Length = 149 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -2 Query: 218 CFSCSV*STLLLDLSCTRDGFQCRRLLSCQLC 123 C CS T ++D DG+Q RR C C Sbjct: 3 CPFCSTEETKVIDSRLVSDGYQVRRRRECTKC 34
>SIVA_MOUSE (O54926) Apoptosis regulatory protein Siva (CD27-binding protein)| (CD27BP) Length = 175 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -2 Query: 260 QCRRLLSCQLCVQTCFSCSV*STLLLDLSCTRDGFQCRRLLSCQL 126 QC R L C CV TC+ C + +L L+ D + SC + Sbjct: 129 QCERAL-CGQCVYTCWGCGALACVLCGLADYADDGEKTLCTSCAM 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,849,044 Number of Sequences: 219361 Number of extensions: 779827 Number of successful extensions: 1453 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1444 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
