ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41e07 |
|---|---|
| Clone Library Name | barley_pub |
>SDF2_ARATH (Q93ZE8) Stromal cell-derived factor 2-like protein precursor| (SDF2-like protein) Length = 218 Score = 156 bits (395), Expect = 3e-38 Identities = 66/95 (69%), Positives = 84/95 (88%) Frame = -3 Query: 505 ASPITGNLEVSCFGGEGESDTGDYWMLEIEGSGKTWRQNQQIRLRHFDTGGYLHSHDRKY 326 ASPI+GNLEVSCFG + SDTGD+W L IEGSGKTW+Q+Q++RL+H DT GYLHSHD+KY Sbjct: 122 ASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKY 181 Query: 325 TRIAGGQQEVCGVGDKRPDNVWIAAEGVYFPVSQA 221 RIAGGQQEVCG+ +K+ DN+W+AAEGVY P++++ Sbjct: 182 QRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216 Score = 33.5 bits (75), Expect = 0.34 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Frame = -3 Query: 493 TGNLEVSCFGGEGESDTGDYWMLE-----IEGSGKTWRQNQQIRLRHFDTGGYLHSHDRK 329 +G+ + S G G D+ YW+++ E G + IRL+H T +LHSH Sbjct: 63 SGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSH--L 120 Query: 328 YTRIAGGQQEVCGVGD 281 + G EV GD Sbjct: 121 HASPISGNLEVSCFGD 136
>SDF2_MOUSE (Q9DCT5) Stromal cell-derived factor 2 precursor (SDF-2)| Length = 211 Score = 63.9 bits (154), Expect = 2e-10 Identities = 34/93 (36%), Positives = 50/93 (53%) Frame = -3 Query: 502 SPITGNLEVSCFGGEGESDTGDYWMLEIEGSGKTWRQNQQIRLRHFDTGGYLHSHDRKYT 323 SP++GN EVS FG EGE D D W + +G W ++ ++R +H T L +Y Sbjct: 110 SPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYG 167 Query: 322 RIAGGQQEVCGVGDKRPDNVWIAAEGVYFPVSQ 224 R GQ+EV G+ +N W A EG++ S+ Sbjct: 168 RPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200 Score = 36.6 bits (83), Expect = 0.040 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = -3 Query: 493 TGNLEVSCFGGEGESDTGDYWMLEIEGS-----GKTWRQNQQIRLRHFDTGGYLHSHDRK 329 +G+ + S G D+ YW + + + G + Q IRL H +TG LHSH Sbjct: 50 SGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSH--H 107 Query: 328 YTRIAGGQQEVCGVGDK 278 +T G QEV G++ Sbjct: 108 FTSPLSGNQEVSAFGEE 124
>SDF2_HUMAN (Q99470) Stromal cell-derived factor 2 precursor (SDF-2)| Length = 211 Score = 62.4 bits (150), Expect = 7e-10 Identities = 33/93 (35%), Positives = 50/93 (53%) Frame = -3 Query: 502 SPITGNLEVSCFGGEGESDTGDYWMLEIEGSGKTWRQNQQIRLRHFDTGGYLHSHDRKYT 323 SP++GN EV+ FG EGE D D W + +G W ++ ++R +H T L +Y Sbjct: 110 SPLSGNQEVTAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYG 167 Query: 322 RIAGGQQEVCGVGDKRPDNVWIAAEGVYFPVSQ 224 R GQ+EV G+ +N W A EG++ S+ Sbjct: 168 RPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200 Score = 35.8 bits (81), Expect = 0.068 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Frame = -3 Query: 475 SCFGGEGESDTGDYWMLEIEGS-----GKTWRQNQQIRLRHFDTGGYLHSHDRKYTRIAG 311 S G D+ YW + + + G + Q IRL H +TG LHSH +T Sbjct: 56 SVTGVTSVDDSNSYWRIRRKSATVCERGTPIKCGQPIRLTHVNTGRNLHSH--HFTSPLS 113 Query: 310 GQQEVCGVGDK 278 G QEV G++ Sbjct: 114 GNQEVTAFGEE 124
>SDF2L_MOUSE (Q9ESP1) Stromal cell-derived factor 2-like protein 1 precursor| (SDF2-like protein 1) Length = 221 Score = 61.6 bits (148), Expect = 1e-09 Identities = 31/88 (35%), Positives = 44/88 (50%) Frame = -3 Query: 502 SPITGNLEVSCFGGEGESDTGDYWMLEIEGSGKTWRQNQQIRLRHFDTGGYLHSHDRKYT 323 SP++ N EVS FG +GE D D W + SG+ W + +R +H T +L +Y Sbjct: 122 SPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREASVRFQHVGTSVFLSVTGEQYG 179 Query: 322 RIAGGQQEVCGVGDKRPDNVWIAAEGVY 239 GQ EV G+ N W A EG++ Sbjct: 180 NPIRGQHEVHGMPSANAHNTWKAMEGIF 207 Score = 31.2 bits (69), Expect = 1.7 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Frame = -3 Query: 493 TGNLEVSCFGGEGESDTGDYWMLE--IEGS---GKTWRQNQQIRLRHFDTGGYLHSHDRK 329 +G+ + S G E D YW + EG G R Q +RL H TG LH+H Sbjct: 62 SGSGQQSVTGVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTH--H 119 Query: 328 YTRIAGGQQEVCGVGD 281 + QEV G+ Sbjct: 120 FPSPLSNNQEVSAFGE 135
>SDF2L_HUMAN (Q9HCN8) Stromal cell-derived factor 2-like protein 1 precursor| (SDF2-like protein 1) (PWP1-interacting protein 8) Length = 221 Score = 61.2 bits (147), Expect = 2e-09 Identities = 32/92 (34%), Positives = 45/92 (48%) Frame = -3 Query: 502 SPITGNLEVSCFGGEGESDTGDYWMLEIEGSGKTWRQNQQIRLRHFDTGGYLHSHDRKYT 323 SP++ N EVS FG +GE D D W + SG+ W + +R +H T +L +Y Sbjct: 122 SPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYG 179 Query: 322 RIAGGQQEVCGVGDKRPDNVWIAAEGVYFPVS 227 GQ EV G+ N W A EG++ S Sbjct: 180 SPIRGQHEVHGMPSANTHNTWKAMEGIFIKPS 211 Score = 32.7 bits (73), Expect = 0.58 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Frame = -3 Query: 493 TGNLEVSCFGGEGESDTGDYWMLE--IEGS---GKTWRQNQQIRLRHFDTGGYLHSHDRK 329 +G+ + S G E D YW + EG G R Q +RL H TG LH+H Sbjct: 62 SGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTH--H 119 Query: 328 YTRIAGGQQEVCGVGD 281 + QEV G+ Sbjct: 120 FPSPLSNNQEVSAFGE 135
>PMT5_YEAST (P52867) Dolichyl-phosphate-mannose--protein mannosyltransferase 5| (EC 2.4.1.109) Length = 743 Score = 46.2 bits (108), Expect = 5e-05 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Frame = -3 Query: 481 EVSCFGGEG-ESDTGDYWMLEIEGSGKTWRQNQQ--------IRLRHFDTGGYLHSHDRK 329 EVSC+G EG E D D W++EI+ Q+ RL+H+ TG YL SH K Sbjct: 422 EVSCYGYEGFEGDINDDWIIEIDKKRSEPGPAQEHIRAIETKFRLKHYLTGCYLFSHPEK 481 Query: 328 YTRIAGGQQEV 296 GQQEV Sbjct: 482 LPEWGFGQQEV 492
>PMT1_CANAL (O74189) Dolichyl-phosphate-mannose--protein mannosyltransferase 1| (EC 2.4.1.109) Length = 877 Score = 42.7 bits (99), Expect = 6e-04 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 12/100 (12%) Frame = -3 Query: 481 EVSCFGGEG-ESDTGDYWMLEI------EGSGKTWRQ--NQQIRLRHFDTGGYLHSHDRK 329 E SC+G +G D D W++EI +G +T+ + N RLRH TG YL S + K Sbjct: 440 ECSCYGYDGFAGDANDDWVVEIVNYRSQKGEAQTFVKAINTIFRLRHAMTGHYLFSSEVK 499 Query: 328 YTRIAGGQQEVCGVGD-KRPDNVWI--AAEGVYFPVSQAK 218 GQQEV KR W E P S+AK Sbjct: 500 LPEWGFGQQEVTSASQGKRALTHWYIETNENSILPPSEAK 539 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -3 Query: 382 IRLRHFDT-GGYLHSHDRKYTRIAGGQQEVCGVGDKRPDNVWI 257 + +RH DT GGYLHSH+ Y + QQ++ +N W+ Sbjct: 349 VTIRHVDTQGGYLHSHEHFY-QTGSKQQQITLYPHLDSNNKWL 390 Score = 30.4 bits (67), Expect = 2.9 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -3 Query: 385 QIRLRHFDTGGYLHSHDRK 329 +IRL+H +TG LHSHD K Sbjct: 411 KIRLKHINTGRRLHSHDEK 429
>PMT1_YEAST (P33775) Dolichyl-phosphate-mannose--protein mannosyltransferase 1| (EC 2.4.1.109) Length = 817 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 9/80 (11%) Frame = -3 Query: 481 EVSCFGGEG-ESDTGDYWMLEIEGSGKTWRQNQQ--------IRLRHFDTGGYLHSHDRK 329 EVSC+G G + D D W++EI+ Q+ RLRH TG YL SH+ K Sbjct: 426 EVSCYGYSGFDGDANDDWVVEIDKKNSAPGVAQERVIALDTKFRLRHAMTGCYLFSHEVK 485 Query: 328 YTRIAGGQQEVCGVGDKRPD 269 QQEV R D Sbjct: 486 LPAWGFEQQEVTCASSGRHD 505 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -3 Query: 382 IRLRHFDT-GGYLHSHDRKYTRIAGGQQE 299 I LRH T GGYLHSH Y AG +Q+ Sbjct: 333 ISLRHLSTMGGYLHSHSHNYP--AGSEQQ 359
>PMT6_YEAST (P42934) Dolichyl-phosphate-mannose--protein mannosyltransferase 6| (EC 2.4.1.109) Length = 759 Score = 35.4 bits (80), Expect = 0.089 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 19/88 (21%) Frame = -3 Query: 463 GEGESDTGDYWMLEIE-GSGKTWRQNQ-------------QIRLRHFDTGGYLHSHDRKY 326 G G +D+ + W E SG QN ++RL H +TG LHSHD Sbjct: 379 GYGFADSNNVWKFEFSRSSGLELDQNGTLNGKIIPITDGVEVRLSHKNTGSNLHSHDVP- 437 Query: 325 TRIAGGQQEVCG-----VGDKRPDNVWI 257 + ++ G EV G VGD++ D WI Sbjct: 438 SHVSRGNYEVSGYGSQSVGDEKDD--WI 463 Score = 29.6 bits (65), Expect = 4.9 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Frame = -3 Query: 463 GEGESDTGDYWMLEIEGSG-----KTWRQNQQIRLR-HFDTGGYLHSHDRKYTRIAGGQQ 302 G G+S T + + +EG+ + ++ +R H + LHSH + Y GQ+ Sbjct: 317 GTGDSTTNTLFQINLEGTQIEAGPRDVAFGSELTIRSHGLSPNLLHSHIQVYPE-GSGQR 375 Query: 301 EVCGVGDKRPDNVW 260 ++ G G +NVW Sbjct: 376 QITGYGFADSNNVW 389
>PMTY_SCHPO (O42933) Probable dolichyl-phosphate-mannose--protein| mannosyltransferase C16C6.09 (EC 2.4.1.109) Length = 778 Score = 34.7 bits (78), Expect = 0.15 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Frame = -3 Query: 382 IRLRHFDTGGYLHSHDRKYT------RIAGGQQEVCGVGDKRPDNVW-IAAEGVYFPVSQ 224 + ++H T +LHSH KY RI+ G Q+V G +N W I Y P + Sbjct: 345 VTIKHMGTNAFLHSHPEKYPIPYDDGRISSGGQQVTGYQFDDENNYWMILPADHYDPPIE 404 Query: 223 AK 218 AK Sbjct: 405 AK 406
>POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)| (Dolichyl-phosphate-mannose--protein mannosyltransferase 2) (dPOMT2) Length = 765 Score = 31.6 bits (70), Expect = 1.3 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -3 Query: 370 HFDTGGYLHSHDRKYTRIAGG-QQEVCGVGDKRPDNVWI 257 H GGYLHSH Y + +G QQ+V K +N W+ Sbjct: 332 HKTGGGYLHSHHHLYPKGSGARQQQVTTYTHKDENNKWL 370
>PMTX_SCHPO (O13898) Probable dolichyl-phosphate-mannose--protein| mannosyltransferase C22A12.07c (EC 2.4.1.109) Length = 893 Score = 30.8 bits (68), Expect = 2.2 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Frame = -3 Query: 454 ESDTGDYWMLEIEGSGKTWRQNQQ-------IRLRHFDTGGYLHSHDRK 329 E + W++E E S R N + +RLRH TG LHSH+ K Sbjct: 352 EPNQNALWIIEHEHSQDNNRSNIELLKDGSVVRLRHVMTGRALHSHEHK 400
>VE2_BPV1 (P03122) Regulatory protein E2| Length = 410 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = -3 Query: 457 GESDTGDYWMLEIEGSGKTWRQNQQIRLRHFDTGGYLHSHDRKYTRIAGGQQEVCGVGDK 278 G TG Y+ + G+G+ + F T G+ D+ R+ G Sbjct: 151 GADGTGLYYCT-MAGAGRIYYSRFGDEAARFSTTGHYSVRDQD--RVYAGVSSTSSDFRD 207 Query: 277 RPDNVWIAAEG 245 RPD VW+A+EG Sbjct: 208 RPDGVWVASEG 218
>WISP1_HUMAN (O95388) WNT1-inducible signaling pathway protein 1 precursor| (WISP-1) (Wnt-1-induced secreted protein) Length = 367 Score = 30.4 bits (67), Expect = 2.9 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Frame = +3 Query: 216 YLAWLTGK*TPSAAIQTLSGRLSPTPHTSCCPPA------MRVYFLSWLCR*PP 359 +L W T +AA L+ LSP P T PA R F W C PP Sbjct: 4 FLPWTLAAVTAAAASTVLATALSPAPTTMDFTPAPLEDTSSRPQFCKWPCECPP 57
>PMT4_YEAST (P46971) Dolichyl-phosphate-mannose--protein mannosyltransferase 4| (EC 2.4.1.109) Length = 762 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 415 GSGKTWRQNQQIRLRHFDTGGYLHSHD 335 G G+ NQ IRLRH T YL +HD Sbjct: 397 GKGQAVLLNQHIRLRHVATDTYLLAHD 423 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = -3 Query: 382 IRLRHFDTGGYLHSHDRKYT------RIAGGQQEVCGVGDKRPDNVW 260 I ++H DT +LHSH +Y RI+ Q+V G +N W Sbjct: 340 ITIKHQDTDAFLHSHLARYPQRYEDGRISSAGQQVTGYTHPDFNNQW 386
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 262 RHCRVACRQHRIPLAVHLQCGYTSCH 339 RHC +AC R A HL+C SCH Sbjct: 1094 RHCELACPPGRYGAACHLEC---SCH 1116
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 355 HQCQNGATEFVGFDAMFSHCPQS 423 HQCQNGAT G D CP++ Sbjct: 280 HQCQNGATCLDGLDTYTCLCPKT 302
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 28.9 bits (63), Expect = 8.3 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = -3 Query: 403 TWRQNQQIRLRHFDTGGYLHSHDRKYTRIAGGQQEVCG--VGDKRPDNVWIAAEGVYFPV 230 ++R+N+ +R+RH GG + + G ++CG VG +V++A FPV Sbjct: 11 SYRRNELVRIRHESDGG-----TKPLKNMNGQICQICGDDVGLAETGDVFVACNECAFPV 65 Query: 229 SQAK*LPCW 203 + PC+ Sbjct: 66 CR----PCY 70
>KISSR_RAT (Q924U1) KiSS-1 receptor (KiSS-1R) (Kisspeptins receptor) (Metastin| receptor) (G-protein coupled receptor 54) (rOT7T175) Length = 396 Score = 28.9 bits (63), Expect = 8.3 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Frame = +3 Query: 36 VIGSIMCSSV-HIQQAYITLTARVN*TRT*PNISNDYKSSIPNHTQIVISVMTPLIIQQG 212 V+G MC V +IQQ + T T T ++ Y + P + TP + Sbjct: 109 VLGDFMCKFVNYIQQVSVQATCA---TLTAMSVDRWYVTVFPLRA---LHRRTPRLALTV 162 Query: 213 SYLAWLTGK*TPSAAIQTLSGRLSPTPHTSC 305 S W+ G SA + L RLSP PHT C Sbjct: 163 SLSIWV-GSAAVSAPVLALH-RLSPGPHTYC 191
>GATB_CHLTR (O84007) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 488 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -1 Query: 387 NKFGCAILTLVA-ICTAMTGSIPALQVDSKRYAVL 286 N FG T ++ +CT M GS+P L D+ R AVL Sbjct: 32 NHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVL 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,015,798 Number of Sequences: 219361 Number of extensions: 1510900 Number of successful extensions: 4214 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4210 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
