ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_481233.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 Score = 278 bits (140), Expect = 2e-71 Identities = 248/284 (87%) Strand = Plus / Minus Query: 224 ctggctcaccggaaagtagacaccttcagctgcaatccagacattgtcgggtcgcttgtc 283 |||| ||||||| | |||||| ||||||||||||| |||||||||||| || || ||||| Sbjct: 962 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 903 Query: 284 gccaacaccgcatacctcttgctgtccacctgcaatgcgggtatacttcctgtcatggct 343 ||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 902 gccaacaccacatacctcttgctgtccaccagcaatgcgggtgtacttcctatcatggct 843 Query: 344 gtgcagatagccaccagtgtcaaaatggcgcaaccgaatttgttggttttgacgccatgt 403 |||||||| |||||||| |||| |||||||||||| |||| |||||||| ||||| | Sbjct: 842 atgcagataaccaccagtatcaacatggcgcaaccggattttctggttttgccgccaaga 783 Query: 404 tttcccactgccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcacc 463 |||||||||||||||||||||||| |||| |||||||| || ||||| ||| ||||| Sbjct: 782 cttcccactgccctcaatctcgagcctccagtagtctccagtgtctgattcattttcacc 723 Query: 464 accaaagcaactaacctccagattccctgtaatgggagaagcat 507 ||||||||||||||||| | ||| || |||||||||||||||| Sbjct: 722 gccaaagcaactaacctctaaatttcccgtaatgggagaagcat 679
>dbj|AK100085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002O21, full insert sequence Length = 1188 Score = 270 bits (136), Expect = 4e-69 Identities = 247/284 (86%) Strand = Plus / Minus Query: 224 ctggctcaccggaaagtagacaccttcagctgcaatccagacattgtcgggtcgcttgtc 283 |||| ||||||| | |||||| ||||||||||||| |||||||||| | || || ||||| Sbjct: 962 ctggttcaccgggaggtagactccttcagctgcaagccagacattgccaggacgtttgtc 903 Query: 284 gccaacaccgcatacctcttgctgtccacctgcaatgcgggtatacttcctgtcatggct 343 ||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 902 gccaacaccacatacctcttgctgtccaccagcaatgcgggtgtacttcctatcatggct 843 Query: 344 gtgcagatagccaccagtgtcaaaatggcgcaaccgaatttgttggttttgacgccatgt 403 |||||||| |||||||| |||| |||||||||||| |||| |||||||| ||||| | Sbjct: 842 atgcagataaccaccagtatcaacatggcgcaaccggattttctggttttgccgccaaga 783 Query: 404 tttcccactgccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcacc 463 |||||||||||||||||||||||| |||| |||||||| || ||||| ||| ||||| Sbjct: 782 cttcccactgccctcaatctcgagcctccagtagtctccagtgtctgattcattttcacc 723 Query: 464 accaaagcaactaacctccagattccctgtaatgggagaagcat 507 ||||||||||||||||| | ||| || |||||||||||||||| Sbjct: 722 gccaaagcaactaacctctaaatttcccgtaatgggagaagcat 679
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 151 bits (76), Expect = 3e-33 Identities = 118/132 (89%) Strand = Plus / Plus Query: 297 acctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgcagatagcca 356 ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||| Sbjct: 10804462 acctcttgctgtccaccagcaatgcgggtgtacttcctatcatggctatgcagataacca 10804521 Query: 357 ccagtgtcaaaatggcgcaaccgaatttgttggttttgacgccatgttttcccactgccc 416 ||||| |||| |||||||||||| |||| |||||||| ||||| | |||||||||||| Sbjct: 10804522 ccagtatcaacatggcgcaaccggattttctggttttgccgccaagacttcccactgccc 10804581 Query: 417 tcaatctcgagc 428 |||||||||||| Sbjct: 10804582 tcaatctcgagc 10804593 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 224 ctggctcaccggaaagtagacaccttcagctgcaatccagacattgtcgggtcgcttgtc 283 |||| ||||||| | |||||| ||||||||||||| |||||||||||| || || ||||| Sbjct: 10804278 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 10804337 Query: 284 gccaacaccgcatacct 300 ||||||||| ||||||| Sbjct: 10804338 gccaacaccacatacct 10804354
>dbj|AP004556.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026A08 Length = 171272 Score = 151 bits (76), Expect = 3e-33 Identities = 118/132 (89%) Strand = Plus / Plus Query: 297 acctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgcagatagcca 356 ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||| Sbjct: 18247 acctcttgctgtccaccagcaatgcgggtgtacttcctatcatggctatgcagataacca 18306 Query: 357 ccagtgtcaaaatggcgcaaccgaatttgttggttttgacgccatgttttcccactgccc 416 ||||| |||| |||||||||||| |||| |||||||| ||||| | |||||||||||| Sbjct: 18307 ccagtatcaacatggcgcaaccggattttctggttttgccgccaagacttcccactgccc 18366 Query: 417 tcaatctcgagc 428 |||||||||||| Sbjct: 18367 tcaatctcgagc 18378 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 224 ctggctcaccggaaagtagacaccttcagctgcaatccagacattgtcgggtcgcttgtc 283 |||| ||||||| | |||||| ||||||||||||| |||||||||||| || || ||||| Sbjct: 18063 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 18122 Query: 284 gccaacaccgcatacct 300 ||||||||| ||||||| Sbjct: 18123 gccaacaccacatacct 18139
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 151 bits (76), Expect = 3e-33 Identities = 118/132 (89%) Strand = Plus / Plus Query: 297 acctcttgctgtccacctgcaatgcgggtatacttcctgtcatggctgtgcagatagcca 356 ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||| Sbjct: 101594 acctcttgctgtccaccagcaatgcgggtgtacttcctatcatggctatgcagataacca 101653 Query: 357 ccagtgtcaaaatggcgcaaccgaatttgttggttttgacgccatgttttcccactgccc 416 ||||| |||| |||||||||||| |||| |||||||| ||||| | |||||||||||| Sbjct: 101654 ccagtatcaacatggcgcaaccggattttctggttttgccgccaagacttcccactgccc 101713 Query: 417 tcaatctcgagc 428 |||||||||||| Sbjct: 101714 tcaatctcgagc 101725 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 224 ctggctcaccggaaagtagacaccttcagctgcaatccagacattgtcgggtcgcttgtc 283 |||| ||||||| | |||||| ||||||||||||| |||||||||||| || || ||||| Sbjct: 101410 ctggttcaccgggaggtagactccttcagctgcaagccagacattgtcaggacgtttgtc 101469 Query: 284 gccaacaccgcatacct 300 ||||||||| ||||||| Sbjct: 101470 gccaacaccacatacct 101486
>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence Length = 85905 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 234 ggaaagtagacaccttcagctgcaatccagacattgtc 271 |||| |||||||||||||||||| | |||||||||||| Sbjct: 71372 ggaaggtagacaccttcagctgccagccagacattgtc 71335
>ref|XM_482616.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1210 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 414 ccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcaccaccaaagcaa 473 ||||||||||| ||| ||||||| ||||| |||||||| | || || |||||||| || Sbjct: 698 ccctcaatctccagcctccaataatctccagtatctgattgtccatccccaccaaaacag 639 Query: 474 ctaacctc 481 |||||||| Sbjct: 638 ctaacctc 631
>dbj|AK058761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B11, full insert sequence Length = 1210 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Minus Query: 414 ccctcaatctcgagcatccaatagtctcctgtatctgactcaccctcaccaccaaagcaa 473 ||||||||||| ||| ||||||| ||||| |||||||| | || || |||||||| || Sbjct: 698 ccctcaatctccagcctccaataatctccagtatctgattgtccatccccaccaaaacag 639 Query: 474 ctaacctc 481 |||||||| Sbjct: 638 ctaacctc 631
>gb|DQ213617.1| Taeniopygia guttata clone 0058P0036D09 docking protein 5 (downstream of tyrosine kinase 5)-like mRNA, complete sequence Length = 1213 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ttatttcagtgatgacacctc 195 ||||||||||||||||||||| Sbjct: 42 ttatttcagtgatgacacctc 62
>gb|DQ213616.1| Taeniopygia guttata clone 0058P0027B02 docking protein 5 (downstream of tyrosine kinase 5)-like mRNA, complete sequence Length = 1213 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ttatttcagtgatgacacctc 195 ||||||||||||||||||||| Sbjct: 42 ttatttcagtgatgacacctc 62
>gb|AC161798.6| Mus musculus chromosome 7, clone RP23-267I20, complete sequence Length = 182519 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 66 catatacaacaagcttacataacactaa 93 |||| |||| |||||||||||||||||| Sbjct: 6595 catacacaagaagcttacataacactaa 6622
>gb|AC132428.3| Mus musculus BAC clone RP23-203K20 from chromosome 7, complete sequence Length = 194926 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 66 catatacaacaagcttacataacactaa 93 |||| |||| |||||||||||||||||| Sbjct: 98194 catacacaagaagcttacataacactaa 98167
>emb|CR974468.5| Pig DNA sequence from clone PigE-178B21 on chromosome 7, complete sequence Length = 120695 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ttcctgtcatggctgtgcag 349 |||||||||||||||||||| Sbjct: 54144 ttcctgtcatggctgtgcag 54125
>gb|AC110028.8| Mus musculus chromosome 6, clone RP23-44E17, complete sequence Length = 243770 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aatcatacacaaattgttatttca 182 ||||||||| |||||||||||||| Sbjct: 212290 aatcatacaaaaattgttatttca 212313
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tcaccaccaaagcaactaac 478 |||||||||||||||||||| Sbjct: 2892235 tcaccaccaaagcaactaac 2892216
>emb|CR788320.11| Zebrafish DNA sequence from clone DKEY-217F16 in linkage group 13, complete sequence Length = 174497 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tgaagaaacggagcaagcac 25 |||||||||||||||||||| Sbjct: 49664 tgaagaaacggagcaagcac 49645
>gb|AC155844.2| Mus musculus 6 BAC RP24-179E20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167751 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 atatacaacaagcttacataacac 90 |||||||||||||||||| ||||| Sbjct: 142095 atatacaacaagcttacagaacac 142118
>gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, complete sequence Length = 183953 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ccaaacatttctaatgattacaag 146 ||||||||||||||||||| |||| Sbjct: 63854 ccaaacatttctaatgattgcaag 63831 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,050,161 Number of Sequences: 3902068 Number of extensions: 4050161 Number of successful extensions: 68821 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68750 Number of HSP's gapped (non-prelim): 71 length of query: 507 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 485 effective length of database: 17,147,199,772 effective search space: 8316391889420 effective search space used: 8316391889420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
