>PRT1_ARATH (Q8LBL5) Ubiquitin protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1|
           protein)
          Length = 410

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 6   HKSCWLKMTQSSNGNNCSKCPLL*APLTYHQHLQNRLHFLIIICYG-AKKARSVQ 167
           H SC+  + +S NG   S CP+   P  +   +  +L+FL+   Y  A K R  Q
Sbjct: 43  HLSCFWCVHKSMNGFRESHCPICRDPYVHFPSVCQKLYFLLKKMYPLAHKKREEQ 97

>ARX1_SCHPO (O60180) Probable metalloprotease arx1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 417

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 74  VSSTYIPSASTKSLAFFNNNMLRGKKSSV 160
           V+S  +P AST+ ++ + +N+L   KSS+
Sbjct: 35  VASRCVPGASTREISSYGDNLLHEYKSSI 63

>YR865_MIMIV (Q5UP18) Hypothetical protein R865|
          Length = 590

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -3

Query: 216 RFKSFWLCRHYLSCYHPE-----QTELFLPRSILLLKNASDFVDADGM*VELTIKDI*NN 52
           +F   +L  +++    PE     + E+     IL LKN+  F D  G  +++ ++   N+
Sbjct: 67  KFNKVFLLDYWVESNIPEFNSNLEYEITQAPDILKLKNSEKFKDDKGNIIDIEVRGNKND 126

Query: 51  YSHLMIVSFLTSSFYV 4
                +V  + S FY+
Sbjct: 127 SECYFLVKDVASGFYI 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,540,454
Number of Sequences: 219361
Number of extensions: 662495
Number of successful extensions: 1268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)