Clone Name | rbart41e05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_721222.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05798) partial mRNA Length = 192 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tgcattttttaataataatat 135 ||||||||||||||||||||| Sbjct: 111 tgcattttttaataataatat 91
>gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete sequence Length = 141672 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 acagtcttgatttgagctcag 280 ||||||||||||||||||||| Sbjct: 67430 acagtcttgatttgagctcag 67450
>gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, complete sequence Length = 222869 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tgctggttaaaaatgacaca 34 |||||||||||||||||||| Sbjct: 29601 tgctggttaaaaatgacaca 29582
>gb|AC104631.2| Drosophila melanogaster clone BACR35D19, complete sequence Length = 166908 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaatgggaataattgttcta 60 |||||||||||||||||||| Sbjct: 2164 aaatgggaataattgttcta 2145
>gb|AC099308.2| Drosophila melanogaster clone BACR11M14, complete sequence Length = 173097 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaatgggaataattgttcta 60 |||||||||||||||||||| Sbjct: 14308 aaatgggaataattgttcta 14327
>ref|XM_719748.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00498) partial mRNA Length = 967 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 12 tgcattttttaataataata 31
>ref|XM_718796.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03699) partial mRNA Length = 885 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 21 tgcattttttaataataata 40
>ref|XM_719153.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04006) partial mRNA Length = 1011 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 11 tgcattttttaataataata 30
>ref|XM_719728.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04511) partial mRNA Length = 939 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 21 tgcattttttaataataata 40
>ref|XM_720445.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05122) partial mRNA Length = 120 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 11 tgcattttttaataataata 30
>ref|XM_720472.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05146) partial mRNA Length = 1056 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 21 tgcattttttaataataata 40
>ref|XM_720966.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05586) partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 11 tgcattttttaataataata 30
>ref|XM_721030.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05637) partial mRNA Length = 942 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 21 tgcattttttaataataata 40
>ref|XM_721853.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06318) partial mRNA Length = 873 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 21 tgcattttttaataataata 40
>ref|XM_722842.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07134) partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 2 tgcattttttaataataata 21
>ref|XM_724829.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00213) partial mRNA Length = 924 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 21 tgcattttttaataataata 40
>ref|XM_722508.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06861) partial mRNA Length = 966 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 2 tgcattttttaataataata 21
>ref|XM_722509.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06862) partial mRNA Length = 1023 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 2 tgcattttttaataataata 21
>ref|XM_740149.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000057.05.0) partial mRNA Length = 1836 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ttttttaataataatatgct 138 |||||||||||||||||||| Sbjct: 1554 ttttttaataataatatgct 1535
>emb|AL096701.14|HSA247I13 Human DNA sequence from clone RP11-247I13 on chromosome 22 Contains the 5' end of the DRG1 gene for developmentally regulated GTP binding protein 1, the EIF4ENIF1 gene foreukaryotic translation initiation factor 4E nuclear import factor 1, the 5' end of the gene for homolog of yeast Sfi1 (SFI1), a H2A histone family member Z (H2AFZ) pseudogene, a ribosomal protein S26 (RPS260) pseudogene, two novel genes and two CpG islands, complete sequence Length = 168110 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 ttgaagtggaaaaggactttcacagtct 266 |||||| | ||||||||||||||||||| Sbjct: 28065 ttgaagagaaaaaggactttcacagtct 28038
>emb|AJ320480.1|PYO320480 Plasmodium yoelii yir3 gene, exons 1-3 Length = 1514 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tgcattttttaataataata 134 |||||||||||||||||||| Sbjct: 1282 tgcattttttaataataata 1263
>gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, complete sequence Length = 163612 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tttttaataataatatgcta 139 |||||||||||||||||||| Sbjct: 139245 tttttaataataatatgcta 139264
>gb|AC008512.8| Homo sapiens chromosome 5 clone CTC-454K8, complete sequence Length = 110931 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gctgctggttaaaaatgacacaat 36 |||||| ||||||||||||||||| Sbjct: 41657 gctgcttgttaaaaatgacacaat 41680
>gb|AC026409.4| Homo sapiens chromosome 5 clone CTC-437M9, complete sequence Length = 163384 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gctgctggttaaaaatgacacaat 36 |||||| ||||||||||||||||| Sbjct: 137653 gctgcttgttaaaaatgacacaat 137630
>gb|AF472921.1| Bacillus grandii grandii clone ggCGd6 Bag320 satellite sequence Length = 316 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ataaccaaaatgacttgaatcgat 218 ||||||||||| |||||||||||| Sbjct: 61 ataaccaaaataacttgaatcgat 38
>gb|AC021080.4|AC021080 Homo sapiens chromosome 5 clone CTC-203K17, complete sequence Length = 103522 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gctgctggttaaaaatgacacaat 36 |||||| ||||||||||||||||| Sbjct: 25956 gctgcttgttaaaaatgacacaat 25979
>gb|AC008580.7| Homo sapiens chromosome 5 clone CTC-564J15, complete sequence Length = 122322 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gctgctggttaaaaatgacacaat 36 |||||| ||||||||||||||||| Sbjct: 61112 gctgcttgttaaaaatgacacaat 61089
>gb|U79505.1|BGU79505 Bacillus grandii grandii satellite DNA Length = 316 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 195 ataaccaaaatgacttgaatcgat 218 ||||||||||| |||||||||||| Sbjct: 61 ataaccaaaataacttgaatcgat 38
>gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 of 74 of the complete sequence Length = 283558 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaatgggaataattgttcta 60 |||||||||||||||||||| Sbjct: 98396 aaatgggaataattgttcta 98377
>gb|AC131231.10| Mus musculus chromosome 19, clone RP24-395L19, complete sequence Length = 181700 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tgctggttaaaaatgacaca 34 |||||||||||||||||||| Sbjct: 178774 tgctggttaaaaatgacaca 178755
>gb|AC102896.9| Mus musculus chromosome 5, clone RP24-353A8, complete sequence Length = 156422 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 attgaagtggaaaaggactt 257 |||||||||||||||||||| Sbjct: 65682 attgaagtggaaaaggactt 65663 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,551,143 Number of Sequences: 3902068 Number of extensions: 4551143 Number of successful extensions: 79077 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79030 Number of HSP's gapped (non-prelim): 47 length of query: 281 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 259 effective length of database: 17,147,199,772 effective search space: 4441124740948 effective search space used: 4441124740948 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)