ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41d11 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 176 bits (446), Expect = 4e-44 Identities = 93/108 (86%), Positives = 99/108 (91%), Gaps = 1/108 (0%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQASQIRQIRRKMVEIM NQA+SCDLKELV+KFIPEVIGKEIEKATSSIFP QNV+VRKV Sbjct: 155 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 210 KILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 215 KILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 161 bits (407), Expect = 1e-39 Identities = 82/106 (77%), Positives = 91/106 (85%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+SQI+QIRRKM EIMV QA +CDLKELV KFIPE IG+EIEKATSSI+P QNV++RKV Sbjct: 155 AQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 213 KILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 215 KILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 160 bits (406), Expect = 2e-39 Identities = 80/105 (76%), Positives = 89/105 (84%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+SQIRQIRRKM EIMVNQA SCDLK+LV KFIPE IG+EIEKATSSI+P QNV++RKV Sbjct: 155 AQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 216 KILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 215 KILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 152 bits (385), Expect = 4e-37 Identities = 77/107 (71%), Positives = 89/107 (83%), Gaps = 1/107 (0%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+SQIRQIRRKM EIMV +A+SCDLKELV KFIPE IG+EIEKAT I+P QNV++RKV Sbjct: 155 AQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 213 KILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 215 KILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 142 bits (359), Expect = 4e-34 Identities = 77/108 (71%), Positives = 88/108 (81%), Gaps = 2/108 (1%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQ-AASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRK 354 AQ+SQIRQIR KM EIM+ + A+SCDLKELV KFIPE IGK+IEKAT I+P QNV++RK Sbjct: 155 AQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRK 214 Query: 353 VKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 213 VKILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 215 VKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 119 bits (297), Expect = 7e-27 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 1/89 (1%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSS-IFPFQNVYVRK 354 AQ+SQI IRRKM EIMV +A +CDLKELV KFIPEVIGKEI++ S I+P Q+ ++RK Sbjct: 153 AQSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRK 211 Query: 353 VKILKAPKFDLGKLMEVHGDYKEDVGVKL 267 VKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 212 VKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 115 bits (288), Expect = 7e-26 Identities = 57/88 (64%), Positives = 72/88 (81%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+SQIR IR+KM +++ NQ +SC ++ELV K IPEVIG+EIE+AT SIFP QNV VRKV Sbjct: 155 AQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYKEDVGVKL 267 KILKAPK D KL+E+HG+ +DVG K+ Sbjct: 215 KILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 114 bits (286), Expect = 1e-25 Identities = 58/102 (56%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KMVEIM + + DLKE+VNK IP+ IGK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 114 bits (285), Expect = 2e-25 Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 9/104 (8%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 114 bits (284), Expect = 2e-25 Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 9/104 (8%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 113 bits (283), Expect = 3e-25 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 113 bits (282), Expect = 4e-25 Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 10/105 (9%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (281), Expect = 5e-25 Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 112 bits (281), Expect = 5e-25 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +VYVRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 112 bits (280), Expect = 6e-25 Identities = 56/102 (54%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +V+VRKV Sbjct: 152 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV 211 Query: 350 KILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 212 KMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/102 (54%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +V+VRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/102 (54%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +V+VRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/102 (54%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +V+VRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 112 bits (279), Expect = 8e-25 Identities = 56/102 (54%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +V+VRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (279), Expect = 8e-25 Identities = 56/102 (54%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+P +V+VRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 111 bits (277), Expect = 1e-24 Identities = 55/88 (62%), Positives = 71/88 (80%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+SQIR I +KM +++ NQA C +KELV K IPEVIG+ IEKAT++I+P QNV+VRKV Sbjct: 155 AQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYKEDVGVKL 267 KILKAPK D KL+E+HG+ +DVG K+ Sbjct: 215 KILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 111 bits (277), Expect = 1e-24 Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 7/102 (6%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK++EKA SI+P +V+VRKV Sbjct: 155 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 246 K+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 215 KMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 102 bits (254), Expect = 7e-22 Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 8/103 (7%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ +Q++ IR+KMVEI+ + +S D+KE+VNK IP+ IGK+IEK+ I+P +V + KV Sbjct: 155 AQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKV 214 Query: 350 KILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 246 K+LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 215 KVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 102 bits (254), Expect = 7e-22 Identities = 49/98 (50%), Positives = 73/98 (74%), Gaps = 1/98 (1%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+S++R+ R+KM+EI+ + ++C L +L +K IPEVIG+EIEK+T +IFP QNV++RKV Sbjct: 155 AQSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 240 K+LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 215 KLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 97.4 bits (241), Expect = 2e-20 Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 2/96 (2%) Frame = -1 Query: 527 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVK 348 + S+IR+IR +M+ + + CDLKE+V+K IP+ IGK+IEK S ++P Q VY+RKVK Sbjct: 154 KTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVK 213 Query: 347 ILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 246 I+K PK DLG+L ++HGD G K+DRPD E Sbjct: 214 IIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 97.4 bits (241), Expect = 2e-20 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 8/103 (7%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ SQ+R+IR +M +I+ N+ + DLK+LVNK + I K+IEK+ I+P +VY+RKV Sbjct: 158 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKV 217 Query: 350 KILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 246 K+LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 218 KVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 92.8 bits (229), Expect = 5e-19 Identities = 44/79 (55%), Positives = 58/79 (73%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+S IR IR+ + EI+ + + L +L +K IPEVI KEIE AT IFP QN++VRKV Sbjct: 155 AQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD 294 K+LK PKFD+G LM +HG+ Sbjct: 215 KLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 92.4 bits (228), Expect = 7e-19 Identities = 44/79 (55%), Positives = 57/79 (72%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ+S IR IR+ + EI+ + L +L +K IPEVI KEIE AT IFP QN++VRKV Sbjct: 155 AQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKV 214 Query: 350 KILKAPKFDLGKLMEVHGD 294 K+LK PKFD+G LM +HG+ Sbjct: 215 KLLKQPKFDVGALMALHGE 233
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 90.1 bits (222), Expect = 3e-18 Identities = 42/79 (53%), Positives = 56/79 (70%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 AQ SQI+ IR KM I+ + S DLK +V K +P+ I K+IEKA ++P +VY+RKV Sbjct: 158 AQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKV 217 Query: 350 KILKAPKFDLGKLMEVHGD 294 K+LK P+FDL LME+HGD Sbjct: 218 KVLKKPRFDLSSLMELHGD 236
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/66 (34%), Positives = 37/66 (56%) Frame = -1 Query: 527 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVK 348 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+P + +RK+K Sbjct: 130 QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIK 189 Query: 347 ILKAPK 330 +L+ P+ Sbjct: 190 VLEEPQ 195
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/66 (34%), Positives = 36/66 (54%) Frame = -1 Query: 527 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVK 348 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+P + +RK+K Sbjct: 131 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIK 190 Query: 347 ILKAPK 330 +L P+ Sbjct: 191 VLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/66 (34%), Positives = 36/66 (54%) Frame = -1 Query: 527 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVK 348 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+P + +RK+K Sbjct: 132 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIK 191 Query: 347 ILKAPK 330 +L P+ Sbjct: 192 VLGEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIP----EVIGKEIEKATSSIFPFQNVY 363 A+ SQ R IR++M +++ A CD E + + + E I ++I++A I+P + Sbjct: 122 AKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAE 181 Query: 362 VRKVKILKAP 333 +RK ++L+ P Sbjct: 182 IRKTEVLEEP 191
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -1 Query: 527 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVK 348 Q SQ R IR+ + +I+ +A + + V + + I EI K I+P + VRK+K Sbjct: 134 QTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIK 193 Query: 347 ILKAP 333 +L P Sbjct: 194 VLAEP 198
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 39.3 bits (90), Expect = 0.007 Identities = 20/65 (30%), Positives = 37/65 (56%) Frame = -1 Query: 527 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVK 348 + SQ R IR M +I+V +A+S + + + + + + EI K I+P + V +RK++ Sbjct: 133 KTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIE 192 Query: 347 ILKAP 333 +L P Sbjct: 193 LLAEP 197
>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae| Length = 221 Score = 38.5 bits (88), Expect = 0.012 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = -1 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVKIL 342 +Q +R+KM+E +V +AA D + + + + + ++ I P + V + K+K+L Sbjct: 141 AQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVL 200 Query: 341 KAP 333 K P Sbjct: 201 KYP 203
>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae| Length = 203 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/66 (30%), Positives = 36/66 (54%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A++SQ++ IR MVEI+ +AA D + + + I + I + I+P + V +RK Sbjct: 129 ARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKT 188 Query: 350 KILKAP 333 ++ P Sbjct: 189 EVETIP 194
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 38.1 bits (87), Expect = 0.015 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A SQ IR+ + +I +A D + V I + +I + I+P + V + K Sbjct: 130 AHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKT 189 Query: 350 KILKAPK 330 K+LKAPK Sbjct: 190 KLLKAPK 196
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 37.0 bits (84), Expect = 0.034 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A SQ +IR+ + I+ +A+ E V + + +I + I+P + V V K Sbjct: 127 AHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKT 186 Query: 350 KILKAP 333 K+LKAP Sbjct: 187 KLLKAP 192
>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae| Length = 204 Score = 36.2 bits (82), Expect = 0.058 Identities = 18/66 (27%), Positives = 36/66 (54%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A++SQ++ IR MV+I+ +A+ D + + + I + I + I+P + V +RK Sbjct: 129 ARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKT 188 Query: 350 KILKAP 333 ++ P Sbjct: 189 QVEAMP 194
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 35.4 bits (80), Expect = 0.098 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 521 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVKIL 342 SQ IR+ + E + +A+ + + + + EI +A I+P + + K K+L Sbjct: 131 SQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVL 190 Query: 341 KAPKFDLGKLME 306 K P+ +LGK +E Sbjct: 191 KVPE-NLGKQVE 201
>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae| Length = 215 Score = 35.4 bits (80), Expect = 0.098 Identities = 19/70 (27%), Positives = 36/70 (51%) Frame = -1 Query: 509 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVKILKAPK 330 QIR+ + + ++N+ S E V I + I ++ AT I+P + + VRK +++ Sbjct: 137 QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSELV---- 192 Query: 329 FDLGKLMEVH 300 L + E+H Sbjct: 193 -SLSGISEIH 201
>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae| Length = 213 Score = 34.3 bits (77), Expect = 0.22 Identities = 23/94 (24%), Positives = 43/94 (45%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A ASQ + IRR M++++ A ++L++ + + I I+P + V ++K Sbjct: 126 ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKT 185 Query: 350 KILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 249 + P+ EV + E+ V +D D D Sbjct: 186 TLEARPE-------EVAAE--EETAVDVDEEDVD 210
>RS3A_METJA (P54059) 30S ribosomal protein S3Ae| Length = 222 Score = 33.1 bits (74), Expect = 0.49 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A Q IR+KM EI+ A + V + + ++I+ IFP +NV + K Sbjct: 136 ANTKQKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKS 195 Query: 350 KILKAPK 330 ++L K Sbjct: 196 EVLSLAK 202
>RS3A_METTH (O27630) 30S ribosomal protein S3Ae| Length = 195 Score = 32.7 bits (73), Expect = 0.64 Identities = 18/66 (27%), Positives = 34/66 (51%) Frame = -1 Query: 530 AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKV 351 A++SQ + +R+ + E + A+ +ELV + I EI I+P + V + K Sbjct: 129 AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKS 188 Query: 350 KILKAP 333 ++L+ P Sbjct: 189 RVLEEP 194
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 5.4 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 422 VIGKEIEKATSSIFPFQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 246 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 245 VIPGAEEV 222 + PG ++ Sbjct: 847 LPPGVNQL 854
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 29.6 bits (65), Expect = 5.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -1 Query: 416 GKEIEKATSSIFPFQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 264 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 263 RPDGDEVIPGAEE 225 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 5.4 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 422 VIGKEIEKATSSIFPFQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 246 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 245 VIPGAEEV 222 + PG ++ Sbjct: 867 LPPGVNQL 874
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/61 (21%), Positives = 31/61 (50%) Frame = -1 Query: 524 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVKI 345 A++ ++R K++ + + S L EL I + + +I ++P + + +RK ++ Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190 Query: 344 L 342 L Sbjct: 191 L 191
>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae| Length = 215 Score = 29.3 bits (64), Expect = 7.1 Identities = 19/97 (19%), Positives = 42/97 (43%) Frame = -1 Query: 509 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPFQNVYVRKVKILKAPK 330 +IR+ + +V++ + + V I + ++ +AT +I+P + + +RK Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRK-------- 188 Query: 329 FDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVA 219 +L+ + G + P +E PG E +A Sbjct: 189 ---SELVSLSG---------MQEPQKNEPAPGGEAIA 213
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.9 bits (63), Expect = 9.2 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +3 Query: 237 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLADVHVLE 377 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,609,905 Number of Sequences: 219361 Number of extensions: 1088178 Number of successful extensions: 2937 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 2878 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2932 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
