ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
2dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
3dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 70 3e-09
4dbj|AK106445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
5dbj|AK101668.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
6gb|AC010809.10| Homo sapiens, clone RP11-3D4, complete sequence 46 0.050
7gb|AC142106.4| Mus musculus BAC clone RP24-180L10 from 1, comple... 44 0.20
8gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, comple... 44 0.20
9gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete se... 40 3.1
10emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in... 40 3.1
11gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 40 3.1
12gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 3.1
13gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, comple... 40 3.1
14gb|AF022981.3| Caenorhabditis elegans cosmid W03F9, complete seq... 40 3.1
15ref|NM_001038418.1| Caenorhabditis elegans W03F9.11 (W03F9.11) m... 40 3.1
16gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete seq... 40 3.1 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 48/51 (94%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                   
Query: 136      aaaactgcacaagaacatttgctcggagaacaactgcaacttacaacaatc 186
                ||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 14864080 aaaactgcacaagaacatt-gctcggataacaattgcaacttacaacaatc 14864031
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>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0707C02
          Length = 163609

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 48/51 (94%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                 
Query: 136    aaaactgcacaagaacatttgctcggagaacaactgcaacttacaacaatc 186
              ||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 149469 aaaactgcacaagaacatt-gctcggataacaattgcaacttacaacaatc 149420
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>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0014G10
          Length = 164147

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 48/51 (94%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                                
Query: 136   aaaactgcacaagaacatttgctcggagaacaactgcaacttacaacaatc 186
             ||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 72419 aaaactgcacaagaacatt-gctcggataacaattgcaacttacaacaatc 72370
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>dbj|AK106445.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E02, full
            insert sequence
          Length = 1598

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 48/51 (94%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 136  aaaactgcacaagaacatttgctcggagaacaactgcaacttacaacaatc 186
            ||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 1596 aaaactgcacaagaacatt-gctcggataacaattgcaacttacaacaatc 1547
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>dbj|AK101668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058C01, full
            insert sequence
          Length = 1285

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 48/51 (94%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 136  aaaactgcacaagaacatttgctcggagaacaactgcaacttacaacaatc 186
            ||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 1283 aaaactgcacaagaacatt-gctcggataacaattgcaacttacaacaatc 1234
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>gb|AC010809.10| Homo sapiens, clone RP11-3D4, complete sequence
          Length = 173087

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 131    cactcaaaactgcacaagaacat 153
              |||||||||||||||||||||||
Sbjct: 135049 cactcaaaactgcacaagaacat 135027
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>gb|AC142106.4| Mus musculus BAC clone RP24-180L10 from 1, complete sequence
          Length = 194634

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 22     aatatggcacctaaatttgaatttga 47
              ||||||| ||||||||||||||||||
Sbjct: 171710 aatatggaacctaaatttgaatttga 171735
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>gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, complete sequence
          Length = 183563

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 22     aatatggcacctaaatttgaatttga 47
              ||||||| ||||||||||||||||||
Sbjct: 148783 aatatggaacctaaatttgaatttga 148758
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>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence
          Length = 138948

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  cagcactcaaaactgcacaa 147
            ||||||||||||||||||||
Sbjct: 7938 cagcactcaaaactgcacaa 7919
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>emb|CR848717.7| Zebrafish DNA sequence from clone DKEY-148B12 in linkage group 5,
             complete sequence
          Length = 207800

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   aaaactgcacaagaacattt 155
             ||||||||||||||||||||
Sbjct: 88575 aaaactgcacaagaacattt 88556
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>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    tgaagaaccaatcatcaatcaaat 232
              |||||||||||| |||||||||||
Sbjct: 756792 tgaagaaccaataatcaatcaaat 756769
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     ctgaatgaagaaccaatcat 223
               ||||||||||||||||||||
Sbjct: 1269215 ctgaatgaagaaccaatcat 1269196
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>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence
          Length = 184596

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   cactcaaaactgcacaagaacatt 154
             ||||||||||||||||| ||||||
Sbjct: 85744 cactcaaaactgcacaacaacatt 85721
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>gb|AF022981.3| Caenorhabditis elegans cosmid W03F9, complete sequence
          Length = 42879

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ggagatgaagctcccactga 207
             ||||||||||||||||||||
Sbjct: 16921 ggagatgaagctcccactga 16940
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>ref|NM_001038418.1| Caenorhabditis elegans W03F9.11 (W03F9.11) mRNA, complete cds
          Length = 609

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 ggagatgaagctcccactga 207
           ||||||||||||||||||||
Sbjct: 74  ggagatgaagctcccactga 55
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>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence
          Length = 138950

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    cagcactcaaaactgcacaa 147
              ||||||||||||||||||||
Sbjct: 131013 cagcactcaaaactgcacaa 131032


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,204,037
Number of Sequences: 3902068
Number of extensions: 2204037
Number of successful extensions: 56858
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56744
Number of HSP's gapped (non-prelim): 109
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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