ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart41d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U88090.1|HVU88090 Hordeum vulgare nonspecific lipid transfer protein (ltp-BR1) mRNA, complete cds Length = 681 Score = 733 bits (370), Expect = 0.0 Identities = 389/394 (98%), Gaps = 1/394 (0%) Strand = Plus / Minus Query: 1 accacaaagagcgccatgaaaa-tgtgcacgccacaggaagaaacatataaattacatat 59 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 619 accacaaagagcgccatgaaaaatgtgcacgccacaggaagaaacatataaattacatat 560 Query: 60 agctggatacatcaccattattgcgtatattcagaaatttagatacacatcggtccacaa 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 agctggatacatcaccattattgcgtatattcagaaatttagatacacatcggtccacaa 500 Query: 120 ctccacatacatcgtcagggtagctagattgtgttgggaaacactgacacatgaacacac 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 ctccacatacatcgtcagggtagctagattgtgttgggaaacactgacacatgaacacac 440 Query: 180 atgaaacatgcagcgagaggacaaaaaggcccgcgtgggcgctgcgctctcccgtatgga 239 ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| Sbjct: 439 atgaaacatgcagcgagaggacagagaggcccgcgtgcgcgctgcgctctcccgtatgga 380 Query: 240 tcgatcatatatgcgtccatctagcaggagggcacgggcaccttgcaggcggccatgacc 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 tcgatcatatatgcgtccatctagcaggagggcacgggcaccttgcaggcggccatgacc 320 Query: 300 ttcttgccgttaggggagtccacgtactgcttgaggttggggtcgcgcgcgtactggcac 359 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 319 ttcttgccgttaggggagtcgacgtactgcttgaggttggggtcgcgcgcgtactggcac 260 Query: 360 atgcaaggctgctgctccctcatcttgctgcagc 393 |||||||||||||||||||||||||||||||||| Sbjct: 259 atgcaaggctgctgctccctcatcttgctgcagc 226
>ref|XM_475853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 285 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 261 tagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtcc 320 ||||||||||| ||||| || | ||||||||||| ||||||||||||||| ||||||| Sbjct: 284 tagcaggaggggacggggacgtggcaggcggccaagaccttcttgccgttgggggagttg 225 Query: 321 acgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctccctc 380 ||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct: 224 acgtagcgctgcaggtttgggtcgcgcgcgtactggcacaggcacggctgctgctccttc 165 Query: 381 atcttgctgcagc 393 ||| |||||||| Sbjct: 164 atccggctgcagc 152
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 261 tagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtcc 320 ||||||||||| ||||| || | ||||||||||| ||||||||||||||| ||||||| Sbjct: 42170 tagcaggaggggacggggacgtggcaggcggccaagaccttcttgccgttgggggagttg 42111 Query: 321 acgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctccctc 380 ||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct: 42110 acgtagcgctgcaggtttgggtcgcgcgcgtactggcacaggcacggctgctgctccttc 42051 Query: 381 atcttgctgcagc 393 ||| |||||||| Sbjct: 42050 atccggctgcagc 42038 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 57151 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 57093
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 261 tagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtcc 320 ||||||||||| ||||| || | ||||||||||| ||||||||||||||| ||||||| Sbjct: 117355 tagcaggaggggacggggacgtggcaggcggccaagaccttcttgccgttgggggagttg 117296 Query: 321 acgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctccctc 380 ||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct: 117295 acgtagcgctgcaggtttgggtcgcgcgcgtactggcacaggcacggctgctgctccttc 117236 Query: 381 atcttgctgcagc 393 ||| |||||||| Sbjct: 117235 atccggctgcagc 117223 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 132336 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 132278
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 261 tagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtcc 320 ||||||||||| ||||| || | ||||||||||| ||||||||||||||| ||||||| Sbjct: 141858 tagcaggaggggacggggacgtggcaggcggccaagaccttcttgccgttgggggagttg 141799 Query: 321 acgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctccctc 380 ||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct: 141798 acgtagcgctgcaggtttgggtcgcgcgcgtactggcacaggcacggctgctgctccttc 141739 Query: 381 atcttgctgcagc 393 ||| |||||||| Sbjct: 141738 atccggctgcagc 141726 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 156839 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 156781
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 261 tagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtcc 320 ||||||||||| ||||| || | ||||||||||| ||||||||||||||| ||||||| Sbjct: 27110774 tagcaggaggggacggggacgtggcaggcggccaagaccttcttgccgttgggggagttg 27110715 Query: 321 acgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctccctc 380 ||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct: 27110714 acgtagcgctgcaggtttgggtcgcgcgcgtactggcacaggcacggctgctgctccttc 27110655 Query: 381 atcttgctgcagc 393 ||| |||||||| Sbjct: 27110654 atccggctgcagc 27110642 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 27125755 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 27125697
>dbj|AK062463.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D11, full insert sequence Length = 625 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 261 tagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtcc 320 ||||||||||| ||||| || | ||||||||||| ||||||||||||||| ||||||| Sbjct: 382 tagcaggaggggacggggacgtggcaggcggccaagaccttcttgccgttgggggagttg 323 Query: 321 acgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctccctc 380 ||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct: 322 acgtagcgctgcaggtttgggtcgcgcgcgtactggcacaggcacggctgctgctccttc 263 Query: 381 atcttgctgcagc 393 ||| |||||||| Sbjct: 262 atccggctgcagc 250
>gb|AY105127.1| Zea mays PCO127262 mRNA sequence Length = 620 Score = 99.6 bits (50), Expect = 7e-18 Identities = 101/118 (85%) Strand = Plus / Minus Query: 260 ctagcaggagggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtc 319 |||||| || ||||||||||||||||| ||||||||| ||||||||||||| || |||| Sbjct: 346 ctagcacgacggcacgggcaccttgcacgcggccatggccttcttgccgttgggcgagtt 287 Query: 320 cacgtactgcttgaggttggggtcgcgcgcgtactggcacatgcaaggctgctgctcc 377 ||||| ||| || |||||||||||||||||| ||||| ||| |||||||||||| Sbjct: 286 gacgtagcgctgaagattggggtcgcgcgcgtacgtgcacaggcacggctgctgctcc 229
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 339 gggtcgcgcgcgtactggcacatgcaaggctgctgc 374 |||||||||||||||||||||| ||| ||||||||| Sbjct: 29292232 gggtcgcgcgcgtactggcacaggcacggctgctgc 29292197
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 339 gggtcgcgcgcgtactggcacatgcaaggctgctgc 374 |||||||||||||||||||||| ||| ||||||||| Sbjct: 3113 gggtcgcgcgcgtactggcacaggcacggctgctgc 3078
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 339 gggtcgcgcgcgtactggcacatgcaaggctgctgc 374 |||||||||||||||||||||| ||| ||||||||| Sbjct: 55030 gggtcgcgcgcgtactggcacaggcacggctgctgc 54995
>dbj|AK062667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F12, full insert sequence Length = 626 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 339 gggtcgcgcgcgtactggcacatgcaaggctgctgc 374 |||||||||||||||||||||| ||| ||||||||| Sbjct: 310 gggtcgcgcgcgtactggcacaggcacggctgctgc 275
>emb|AL670413.19| Mouse DNA sequence from clone RP23-298E4 on chromosome 4, complete sequence Length = 243792 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 166 acacatgaacacacatgaaacatg 189 |||||||||||||||||||||||| Sbjct: 7083 acacatgaacacacatgaaacatg 7060
>ref|XM_475855.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 291 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 282 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 224
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 723 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 665
>emb|AL662905.7| Human DNA sequence from clone RP13-358O4 on chromosome X, complete sequence Length = 99284 Score = 46.1 bits (23), Expect = 0.085 Identities = 23/23 (100%) Strand = Plus / Minus Query: 38 aagaaacatataaattacatata 60 ||||||||||||||||||||||| Sbjct: 67361 aagaaacatataaattacatata 67339
>dbj|AK119689.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-B03, full insert sequence Length = 579 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 365 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 307
>dbj|AK063729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E03, full insert sequence Length = 540 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 269 gggcacgggcaccttgcaggcggccatgaccttcttgccgttaggggagtccacgtact 327 ||||| ||| |||||||||| ||| | ||||||||||||||| || |||| ||||||| Sbjct: 375 gggcaggggaaccttgcaggtggcgaagaccttcttgccgttgggcgagttgacgtact 317
>gb|BT016516.1| Zea mays clone Contig349 mRNA sequence Length = 818 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 289 cggccatgaccttcttgccgtt 310 |||||||||||||||||||||| Sbjct: 312 cggccatgaccttcttgccgtt 291
>ref|XM_359454.1| Magnaporthe grisea 70-15 hypothetical protein (MG05323.4) partial mRNA Length = 1629 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 acaaagagcgccatgaaaatgt 25 |||||||||||||||||||||| Sbjct: 1289 acaaagagcgccatgaaaatgt 1268
>ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) on chromosome 20 Length = 44507 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 aacactgacacatgaacacaca 180 |||||||||||||||||||||| Sbjct: 19362 aacactgacacatgaacacaca 19383
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 ggcggccatgaccttcttgccg 308 |||||||||||||||||||||| Sbjct: 1724267 ggcggccatgaccttcttgccg 1724288
>gb|AE009245.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 15 of 187 of the complete sequence Length = 12796 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 ggcggccatgaccttcttgccg 308 |||||||||||||||||||||| Sbjct: 5977 ggcggccatgaccttcttgccg 5998
>gb|AE008368.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 172 of 187 of the complete sequence Length = 13928 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 ggcggccatgaccttcttgccg 308 |||||||||||||||||||||| Sbjct: 7952 ggcggccatgaccttcttgccg 7931
>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 3/11 Length = 340493 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 aacactgacacatgaacacaca 180 |||||||||||||||||||||| Sbjct: 303632 aacactgacacatgaacacaca 303653
>dbj|AK062493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-H09, full insert sequence Length = 437 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 339 gggtcgcgcgcgtactggcaca 360 |||||||||||||||||||||| Sbjct: 178 gggtcgcgcgcgtactggcaca 157
>gb|AC150871.4| Bos taurus BAC CH240-316E7 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 167244 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 acactgacacatgaacacaca 180 ||||||||||||||||||||| Sbjct: 97364 acactgacacatgaacacaca 97344
>gb|AC134870.4| Mus musculus BAC clone RP23-166E8 from chromosome 7, complete sequence Length = 165349 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 acactgacacatgaacacaca 180 ||||||||||||||||||||| Sbjct: 70802 acactgacacatgaacacaca 70782
>ref|XM_807845.1| Trypanosoma cruzi strain CL Brener ATP-dependent zinc metallopeptidase (Tc00.1047053506223.80) partial mRNA Length = 2052 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 agtccacgtactgcttgaggt 336 ||||||||||||||||||||| Sbjct: 592 agtccacgtactgcttgaggt 572
>ref|XM_809564.1| Trypanosoma cruzi strain CL Brener ATP-dependent zinc metallopeptidase (Tc00.1047053511717.170) partial mRNA Length = 2049 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 agtccacgtactgcttgaggt 336 ||||||||||||||||||||| Sbjct: 589 agtccacgtactgcttgaggt 569
>gb|AC133000.5| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHsd/MCW, complete sequence Length = 245581 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 acactgacacatgaacacaca 180 ||||||||||||||||||||| Sbjct: 103353 acactgacacatgaacacaca 103333
>gb|AF234171.2|AF234171 Mus musculus STAT5B (Stat5b) gene, complete cds Length = 71512 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atgaacacacatgaaacatgc 190 ||||||||||||||||||||| Sbjct: 32559 atgaacacacatgaaacatgc 32539
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 195667 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atgaacacacatgaaacatgc 190 ||||||||||||||||||||| Sbjct: 142696 atgaacacacatgaaacatgc 142676
>gb|AC136926.4| Rattus Norvegicus Strain CH230-163A18 BAC, BN/SsNHsd/MCW, complete sequence Length = 214942 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 acactgacacatgaacacaca 180 ||||||||||||||||||||| Sbjct: 194422 acactgacacatgaacacaca 194402
>gb|AC172623.3| Mus musculus chromosome 8, clone RP23-478A9, complete sequence Length = 182316 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 aaacactgacacatgaacaca 178 ||||||||||||||||||||| Sbjct: 152669 aaacactgacacatgaacaca 152649
>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence Length = 217373 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 aaacactgacacatgaacaca 178 ||||||||||||||||||||| Sbjct: 50454 aaacactgacacatgaacaca 50434
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete sequence Length = 239847 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 atgaacacacatgaaacatgc 190 ||||||||||||||||||||| Sbjct: 177012 atgaacacacatgaaacatgc 176992
>gb|BT016589.1| Zea mays clone Contig422 mRNA sequence Length = 899 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gccatgaccttcttgccgtt 310 |||||||||||||||||||| Sbjct: 337 gccatgaccttcttgccgtt 318
>gb|BT016445.1| Zea mays clone Contig278 mRNA sequence Length = 1018 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gccatgaccttcttgccgtt 310 |||||||||||||||||||| Sbjct: 352 gccatgaccttcttgccgtt 333
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 acaggaagaaacatataaat 52 |||||||||||||||||||| Sbjct: 1138186 acaggaagaaacatataaat 1138205
>gb|AC095326.9| Rattus norvegicus 1 BAC CH230-89E14 (Children's Hospital Oakland Research Institute) complete sequence Length = 219914 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 acacatgaacacacatgaaa 185 |||||||||||||||||||| Sbjct: 32058 acacatgaacacacatgaaa 32077
>gb|AC125526.4| Mus musculus BAC clone RP24-498L21 from chromosome 15, complete sequence Length = 178670 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 acacatgaacacacatgaaa 185 |||||||||||||||||||| Sbjct: 38434 acacatgaacacacatgaaa 38415
>gb|AC146842.9| Medicago truncatula clone mth2-10a3, complete sequence Length = 63866 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gaaacatataaattacatat 59 |||||||||||||||||||| Sbjct: 50735 gaaacatataaattacatat 50754
>gb|AC137836.25| Medicago truncatula clone mth2-10f14, complete sequence Length = 140197 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gaaacatataaattacatat 59 |||||||||||||||||||| Sbjct: 76417 gaaacatataaattacatat 76398
>gb|AC139290.15| Medicago truncatula clone mth2-23f4, complete sequence Length = 127701 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gaaacatataaattacatat 59 |||||||||||||||||||| Sbjct: 105251 gaaacatataaattacatat 105232
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaacatataaattacatata 60 |||||||||||||||||||| Sbjct: 123806 aaacatataaattacatata 123825
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aacatataaattacatatag 61 |||||||||||||||||||| Sbjct: 60990 aacatataaattacatatag 61009
>gb|AE014241.1| Streptococcus agalactiae 2603V/R section 51 of 100 of the complete genome Length = 21827 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 acaggaagaaacatataaat 52 |||||||||||||||||||| Sbjct: 5110 acaggaagaaacatataaat 5129
>gb|AC087675.9| Homo sapiens chromosome 18, clone RP11-871M19, complete sequence Length = 168201 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 40 gaaacatataaattacatatagctggatacat 71 |||||||||||| |||||||| ||| |||||| Sbjct: 11845 gaaacatataaactacatatatctgtatacat 11814
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 gcaggcggccatgaccttcttgcc 307 |||||||||||||| ||||||||| Sbjct: 1700557 gcaggcggccatgatcttcttgcc 1700534
>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6 Length = 233050 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 acaggaagaaacatataaat 52 |||||||||||||||||||| Sbjct: 200488 acaggaagaaacatataaat 200507
>gb|AE005873.1| Caulobacter crescentus CB15 section 199 of 359 of the complete genome Length = 10022 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 aggcccgcgtgggcgctgcg 225 |||||||||||||||||||| Sbjct: 8207 aggcccgcgtgggcgctgcg 8226
>gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198476 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aactccacatacatcgtcag 137 |||||||||||||||||||| Sbjct: 152381 aactccacatacatcgtcag 152400
>gb|AC007814.6|AC007814 Drosophila melanogaster, chromosome 3R, region 91D-91E, BAC clone BACR44N12, complete sequence Length = 204173 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 aagaaacatataaattacatatag 61 ||||||||||||||||| |||||| Sbjct: 59510 aagaaacatataaattagatatag 59487
>gb|AC009242.5| Homo sapiens BAC clone RP11-557N21 from 2, complete sequence Length = 158395 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaacatataaattacatata 60 |||||||||||||||||||| Sbjct: 136737 aaacatataaattacatata 136718
>gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome 12, complete sequence Length = 208058 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 acacatgaacacacatgaaa 185 |||||||||||||||||||| Sbjct: 133710 acacatgaacacacatgaaa 133729
>gb|AC068999.15|AC068999 Homo sapiens chromosome 18 clone RP11-70G19, complete sequence Length = 194813 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aacactgacacatgaacaca 178 |||||||||||||||||||| Sbjct: 23039 aacactgacacatgaacaca 23058
>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence Length = 230020 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aactccacatacatcgtcag 137 |||||||||||||||||||| Sbjct: 74147 aactccacatacatcgtcag 74166
>emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 in linkage group 19, complete sequence Length = 242800 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaacatataaattacatata 60 |||||||||||||||||||| Sbjct: 112808 aaacatataaattacatata 112789
>emb|BX294662.13| Zebrafish DNA sequence from clone DKEYP-117E6 in linkage group 20, complete sequence Length = 154558 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 acacatgaacacacatgaaacatg 189 |||||||||| ||||||||||||| Sbjct: 5955 acacatgaactcacatgaaacatg 5932
>emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in linkage group 20, complete sequence Length = 195351 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cactgacacatgaacacaca 180 |||||||||||||||||||| Sbjct: 175547 cactgacacatgaacacaca 175566
>gb|AY103625.1| Zea mays PCO091587 mRNA sequence Length = 1085 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gccatgaccttcttgccgtt 310 |||||||||||||||||||| Sbjct: 403 gccatgaccttcttgccgtt 384
>emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, complete sequence Length = 314838 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tatattcagaaatttagata 104 |||||||||||||||||||| Sbjct: 208317 tatattcagaaatttagata 208298 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tatattcagaaatttagata 104 |||||||||||||||||||| Sbjct: 205497 tatattcagaaatttagata 205478
>gb|AE003724.3| Drosophila melanogaster chromosome 3R, section 62 of 118 of the complete sequence Length = 232330 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 aagaaacatataaattacatatag 61 ||||||||||||||||| |||||| Sbjct: 38603 aagaaacatataaattagatatag 38580
>dbj|AP000824.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-678L3, complete sequence Length = 186915 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gttgggaaacactgacacat 171 |||||||||||||||||||| Sbjct: 181692 gttgggaaacactgacacat 181673
>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete sequence Length = 181276 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aacactgacacatgaacaca 178 |||||||||||||||||||| Sbjct: 158083 aacactgacacatgaacaca 158102
>gb|AC109314.8| Homo sapiens chromosome 18, clone CTD-3135I6, complete sequence Length = 221501 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 40 gaaacatataaattacatatagctggatacat 71 |||||||||||| |||||||| ||| |||||| Sbjct: 30094 gaaacatataaactacatatatctgtatacat 30125
>emb|AL031770.12|HS20B11 Human DNA sequence from clone RP1-20B11 on chromosome 6p25.1-25.3, complete sequence Length = 140385 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 ctgctgctccctcatcttgc 387 |||||||||||||||||||| Sbjct: 106781 ctgctgctccctcatcttgc 106800
>gb|M12896.1|DROOPSAA D.melanogaster opsin gene Rh2, complete cds Length = 1893 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 aagaaacatataaattacatatag 61 ||||||||||||||||| |||||| Sbjct: 1331 aagaaacatataaattagatatag 1308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,319,861 Number of Sequences: 3902068 Number of extensions: 3319861 Number of successful extensions: 71495 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71280 Number of HSP's gapped (non-prelim): 214 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
