ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
2dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
3dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
5dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
6dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
7gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome ... 60 6e-06
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
9ref|XM_472069.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
10gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
11gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
14dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
16emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
17ref|NM_195276.1| Oryza sativa (japonica cultivar-group) putative... 48 0.021
18gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
21dbj|AK071840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
22dbj|AK070224.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
23dbj|AK066828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
25gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
26emb|AL928779.3|CNS08CC9 Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.021
27emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.021
28ref|XM_476630.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
29emb|AL713994.15| Mouse DNA sequence from clone RP23-378H5 on chr... 42 1.3
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
31dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
33dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
34gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.2
35emb|CR936838.15| Mouse DNA sequence from clone DN-127N6 on chrom... 40 5.2
36gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, comple... 40 5.2
37emb|X13894.1|GGH2AF Chicken histone H2A.F gene 40 5.2
38dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
39emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559... 40 5.2
40emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268... 40 5.2
41emb|AL671857.16| Mouse DNA sequence from clone RP23-176A21 on ch... 40 5.2 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                            
Query: 210      tctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaaaaaggcgtcgc 269
                ||||||||| |||||||||| ||||||| |||||||| || |||||||| ||||||||||
Sbjct: 24792551 tctccggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgc 24792492

                                                                            
Query: 270      ggggcatggcgtggtacgcccccgacgagcccttcttgttcacctccaggcccttcatct 329
                | ||||||   | ||||| ||||| || ||||  |  ||||||||||||  |||||||| 
Sbjct: 24792491 gcggcatgctcttgtacgaccccgccgtgccccgccggttcacctccagcgccttcatcc 24792432

                                      
Query: 330      tctcgaagctgcacagctccac 351
                ||||||||||||||| ||||||
Sbjct: 24792431 tctcgaagctgcacaactccac 24792410



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 306     tgttcacctccaggcccttcatcttctcgaagctgca 342
               ||||||||||||||  |||||||| |||||| |||||
Sbjct: 2549654 tgttcacctccaggttcttcatctgctcgaaactgca 2549690



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 206      gccatctccggcgtcatgtggttcacccagtctccg 241
                |||||||| ||||| | |||||||||||| ||||||
Sbjct: 24848406 gccatctctggcgtgacgtggttcacccaatctccg 24848441
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>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0493C06
          Length = 158923

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                         
Query: 210   tctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaaaaaggcgtcgc 269
             ||||||||| |||||||||| ||||||| |||||||| || |||||||| ||||||||||
Sbjct: 27002 tctccggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgc 26943

                                                                         
Query: 270   ggggcatggcgtggtacgcccccgacgagcccttcttgttcacctccaggcccttcatct 329
             | ||||||   | ||||| ||||| || ||||  |  ||||||||||||  |||||||| 
Sbjct: 26942 gcggcatgctcttgtacgaccccgccgtgccccgccggttcacctccagcgccttcatcc 26883

                                   
Query: 330   tctcgaagctgcacagctccac 351
             ||||||||||||||| ||||||
Sbjct: 26882 tctcgaagctgcacaactccac 26861



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 206   gccatctccggcgtcatgtggttcacccagtctccg 241
             |||||||| ||||| | |||||||||||| ||||||
Sbjct: 82857 gccatctctggcgtgacgtggttcacccaatctccg 82892
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>dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B04, full
            insert sequence
          Length = 1369

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 210  tctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaaaaaggcgtcgc 269
            ||||||||| |||||||||| ||||||| |||||||| || |||||||| ||||||||||
Sbjct: 1024 tctccggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgc 965

                                                                        
Query: 270  ggggcatggcgtggtacgcccccgacgagcccttcttgttcacctccaggcccttcatct 329
            | ||||||   | ||||| ||||| || ||||  |  ||||||||||||  |||||||| 
Sbjct: 964  gcggcatgctcttgtacgaccccgccgtgccccgccggttcacctccagcgccttcatcc 905

                                  
Query: 330  tctcgaagctgcacagctccac 351
            ||||||||||||||| ||||||
Sbjct: 904  tctcgaagctgcacaactccac 883
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                
Query: 205     cgccatctccggcgtcatgtggttcacccagtc 237
               |||||||||||||||||||||||||||||||||
Sbjct: 7945862 cgccatctccggcgtcatgtggttcacccagtc 7945830
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                              
Query: 205   cgccatctccggcgtcatgtggttcacccagtc 237
             |||||||||||||||||||||||||||||||||
Sbjct: 53380 cgccatctccggcgtcatgtggttcacccagtc 53348
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>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full
            insert sequence
          Length = 1260

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                             
Query: 205  cgccatctccggcgtcatgtggttcacccagtc 237
            |||||||||||||||||||||||||||||||||
Sbjct: 1063 cgccatctccggcgtcatgtggttcacccagtc 1031
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>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0043I04, complete sequence
          Length = 145191

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 205   cgccatctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaa 258
             ||||||| ||||||||||||||||   |||||| |||||||| |||||||||||
Sbjct: 59465 cgccatcgccggcgtcatgtggttgcgccagtcgccggcgacacctttcctgaa 59412
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 205      cgccatctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaa 258
                ||||||| ||||||||||||||||   |||||| |||||||| |||||||||||
Sbjct: 21713445 cgccatcgccggcgtcatgtggttgcgccagtcgccggcgacacctttcctgaa 21713392
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>ref|XM_472069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 206  gccatctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaa 258
            ||||||||| | ||||||||   |||||||||||| ||||| |||||||||||
Sbjct: 1004 gccatctcccgggtcatgtgacccacccagtctccagcgactcctttcctgaa 952
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>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21,
              complete sequence
          Length = 146539

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                       
Query: 194    tccagccgggtcgccatctccggcgtcatgtggttcacccagtctccggcgacccct 250
              |||||||| | |||||||||||||| |||||||||   |||||| ||||| ||||||
Sbjct: 116648 tccagccgcgacgccatctccggcgacatgtggttgctccagtcgccggccacccct 116592
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>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10,
              complete sequence
          Length = 157609

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                       
Query: 194    tccagccgggtcgccatctccggcgtcatgtggttcacccagtctccggcgacccct 250
              |||||||| | |||||||||||||| |||||||||   |||||| ||||| ||||||
Sbjct: 142641 tccagccgcgacgccatctccggcgacatgtggttgctccagtcgccggccacccct 142585
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                     
Query: 206      gccatctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaa 258
                ||||||||| | ||||||||   |||||||||||| ||||| |||||||||||
Sbjct: 17195678 gccatctcccgggtcatgtgacccacccagtctccagcgactcctttcctgaa 17195730
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 194      tccagccgggtcgccatctccggcgtcatgtggttcacccagtctccggcgacccct 250
                |||||||| | |||||||||||||| |||||||||   |||||| ||||| ||||||
Sbjct: 17387866 tccagccgcgacgccatctccggcgacatgtggttgctccagtcgccggccacccct 17387810
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>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full
            insert sequence
          Length = 1222

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 194  tccagccgggtcgccatctccggcgtcatgtggttcacccagtctccggcgacccct 250
            |||||||| | |||||||||||||| |||||||||   |||||| ||||| ||||||
Sbjct: 1092 tccagccgcgacgccatctccggcgacatgtggttgctccagtcgccggccacccct 1036
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 194      tccagccgggtcgccatctccggcgtcatgtggttcacccagtctccggcgacccct 250
                |||||||| | |||||||||||||| |||||||||   |||||| ||||| ||||||
Sbjct: 17481576 tccagccgcgacgccatctccggcgacatgtggttgctccagtcgccggccacccct 17481520
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>emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018J19,
              complete sequence
          Length = 169559

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                   
Query: 206    gccatctccggcgtcatgtggttcacccagtctccggcgacccctttcctgaa 258
              ||||||||| | ||||||||   |||||||||||| ||||| |||||||||||
Sbjct: 139975 gccatctcccgggtcatgtgacccacccagtctccagcgactcctttcctgaa 140027
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>ref|NM_195276.1| Oryza sativa (japonica cultivar-group) putative flavonol
           3-sulfotransferase (OSJNBb0038H12.7), mRNA
          Length = 1005

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 321 ccttcatcttctcgaagctgcacagctc 348
           ||||||||||||| ||||||||||||||
Sbjct: 826 ccttcatcttctcaaagctgcacagctc 799
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 321   ccttcatcttctcgaagctgcacagctc 348
             ||||||||||||| ||||||||||||||
Sbjct: 21150 ccttcatcttctcaaagctgcacagctc 21123
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 303     tcttgttcacctccaggcccttcatcttctcgaagctgcacagc 346
               |||| |||||||||| || |||||  ||||||||||||||||||
Sbjct: 9821633 tcttattcacctccaagctcttcaggttctcgaagctgcacagc 9821676



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 203      gtcgccatctccggcgtcat 222
                ||||||||||||||||||||
Sbjct: 27205733 gtcgccatctccggcgtcat 27205752
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 321     ccttcatcttctcgaagctgcacagctc 348
               ||||||||||||| ||||||||||||||
Sbjct: 5902733 ccttcatcttctcaaagctgcacagctc 5902760
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>dbj|AK071840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121F12, full
           insert sequence
          Length = 1834

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 303 tcttgttcacctccaggcccttcatcttctcgaagctgcacagc 346
           |||| |||||||||| || |||||  ||||||||||||||||||
Sbjct: 801 tcttattcacctccaagctcttcaggttctcgaagctgcacagc 758
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>dbj|AK070224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042G18, full
           insert sequence
          Length = 1207

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 303 tcttgttcacctccaggcccttcatcttctcgaagctgcacagc 346
           |||| |||||||||| || |||||  ||||||||||||||||||
Sbjct: 873 tcttattcacctccaagctcttcaggttctcgaagctgcacagc 830
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>dbj|AK066828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L15, full
           insert sequence
          Length = 1243

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 321 ccttcatcttctcgaagctgcacagctc 348
           ||||||||||||| ||||||||||||||
Sbjct: 934 ccttcatcttctcaaagctgcacagctc 907
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 321     ccttcatcttctcgaagctgcacagctc 348
               ||||||||||||| ||||||||||||||
Sbjct: 5903919 ccttcatcttctcaaagctgcacagctc 5903946
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 303     tcttgttcacctccaggcccttcatcttctcgaagctgcacagc 346
               |||| |||||||||| || |||||  ||||||||||||||||||
Sbjct: 9821518 tcttattcacctccaagctcttcaggttctcgaagctgcacagc 9821561



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 203      gtcgccatctccggcgtcat 222
                ||||||||||||||||||||
Sbjct: 27131333 gtcgccatctccggcgtcat 27131352
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>emb|AL928779.3|CNS08CC9 Oryza sativa chromosome 12, . BAC OSJNBa0054I14 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148089

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 303    tcttgttcacctccaggcccttcatcttctcgaagctgcacagc 346
              |||| |||||||||| || |||||  ||||||||||||||||||
Sbjct: 147590 tcttattcacctccaagctcttcaggttctcgaagctgcacagc 147633
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>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 140806

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 303    tcttgttcacctccaggcccttcatcttctcgaagctgcacagc 346
              |||| |||||||||| || |||||  ||||||||||||||||||
Sbjct: 110837 tcttattcacctccaagctcttcaggttctcgaagctgcacagc 110794
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>ref|XM_476630.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1644

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 306 tgttcacctccaggcccttcatcttctcgaagctgca 342
           ||||||||||||||  |||||||| |||||| |||||
Sbjct: 904 tgttcacctccaggttcttcatctgctcgaaactgca 868
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>emb|AL713994.15| Mouse DNA sequence from clone RP23-378H5 on chromosome 11 Contains the
             5' end of the Arf-1 gene for ADP-ribosylation factor 1,
             the Wnt3a gene for wingless-related MMTV integration site
             3A, the Wnt9a gene for wingless-type MMTV integration site
             9A, two novel genes, the 5' end of a novel gene and five
             CpG islands, complete sequence
          Length = 225396

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   gaagctgcacagctccaccac 354
             |||||||||||||||||||||
Sbjct: 96937 gaagctgcacagctccaccac 96917
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 325      catcttctcgaagctgcacagctcc 349
                ||||||||||||| |||||||||||
Sbjct: 33478143 catcttctcgaagttgcacagctcc 33478167
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>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0557A01
          Length = 147201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 325   catcttctcgaagctgcacagctcc 349
             ||||||||||||| |||||||||||
Sbjct: 23340 catcttctcgaagttgcacagctcc 23364
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0022E03
          Length = 163032

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 306    tgttcacctccaggcccttcatcttctcgaagctgca 342
              ||||||||||||||  |||||||| |||||| |||||
Sbjct: 114634 tgttcacctccaggttcttcatctgctcgaaactgca 114670
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>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0415A04
          Length = 160669

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 325    catcttctcgaagctgcacagctcc 349
              ||||||||||||| |||||||||||
Sbjct: 154309 catcttctcgaagttgcacagctcc 154333
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 321     ccttcatcttctcgaagctg 340
               ||||||||||||||||||||
Sbjct: 2728544 ccttcatcttctcgaagctg 2728525
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>emb|CR936838.15| Mouse DNA sequence from clone DN-127N6 on chromosome 3, complete
             sequence
          Length = 174972

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    catctcttattcttaatcaaacag 50
             |||||||||||||| |||||||||
Sbjct: 56835 catctcttattcttgatcaaacag 56812
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>gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, complete sequence
          Length = 92959

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    atctcttattcttaatcaaa 47
             ||||||||||||||||||||
Sbjct: 26239 atctcttattcttaatcaaa 26258
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>emb|X13894.1|GGH2AF Chicken histone H2A.F gene
          Length = 8178

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  gaaaaaggcgtcgcggggca 275
            ||||||||||||||||||||
Sbjct: 2008 gaaaaaggcgtcgcggggca 1989
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>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0072I06
          Length = 162411

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 206   gccatctccggcgtcatgtggttcacccagtctccg 241
             |||||||| ||||| | |||||||||||| ||||||
Sbjct: 32038 gccatctctggcgtgacgtggttcacccaatctccg 32073
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>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145816

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    gtcgccatctccggcgtcat 222
              ||||||||||||||||||||
Sbjct: 144633 gtcgccatctccggcgtcat 144652
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>emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146585

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gtcgccatctccggcgtcat 222
             ||||||||||||||||||||
Sbjct: 18765 gtcgccatctccggcgtcat 18784
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>emb|AL671857.16| Mouse DNA sequence from clone RP23-176A21 on chromosome 3, complete
              sequence
          Length = 207354

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 27     catctcttattcttaatcaaacag 50
              |||||||||||||| |||||||||
Sbjct: 150530 catctcttattcttgatcaaacag 150507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,528,667
Number of Sequences: 3902068
Number of extensions: 2528667
Number of successful extensions: 43789
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43486
Number of HSP's gapped (non-prelim): 300
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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