ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASC1_LYCES (Q9M6A3) ASC1 protein (Alternaria stem canker resista... 33 0.37
2NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 pr... 29 7.1
3NUON_BUCAI (P57264) NADH-quinone oxidoreductase chain N (EC 1.6.... 29 9.2

>ASC1_LYCES (Q9M6A3) ASC1 protein (Alternaria stem canker resistance protein 1)|
          Length = 308

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
 Frame = -1

Query: 279 LSSVVGLDLIS*---SGISLNFSFRSQICI------STCYSVLYVLGLYDVKNVMFARYF 127
           +S   G DLI+    S  +L F+    IC       STCY +LYVL +   +      YF
Sbjct: 199 MSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYF 258

Query: 126 VWMFLSLFLHVAHLY 82
           V+  L + L V HL+
Sbjct: 259 VFNALLICLLVLHLF 273



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>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2321

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = -2

Query: 476  DLRQALENDLGPGTCRS*SLYNSSNCIC-----RLLCKVTTHQLEECNSPSCFK*PSCVA 312
            D+ + L N  GPGTC       S  C C        C+     L +C+  SCF   +CV 
Sbjct: 887  DVDECLSNPCGPGTCT--DHVASFTCTCPPGYGGFHCE---QDLPDCSPSSCFNGGTCVD 941

Query: 311  SCYSY 297
               S+
Sbjct: 942  GVNSF 946



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>NUON_BUCAI (P57264) NADH-quinone oxidoreductase chain N (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain N) (NDH-1, chain N)
          Length = 469

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = -1

Query: 294 WQID*LSSVVGLDLIS*SGISLNFSFRSQICISTCYSV--LYVLGLYDVKNVMFARY-FV 124
           W    LSSV+ L LIS +GI +   F  +  I +   +  L+++G   +   +   Y ++
Sbjct: 352 WSHPLLSSVLTLVLISSAGIPMTLGFIGKFYILSIVMIEHLWLIGFAFLIGSLLGLYCYL 411

Query: 123 WMFLSLFLHVAHLY 82
            + L+L+LH + L+
Sbjct: 412 RIILNLYLHPSKLF 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,576,964
Number of Sequences: 219361
Number of extensions: 1378302
Number of successful extensions: 3467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3454
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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