ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart41d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111604.1| Zea mays CL11280_1 mRNA sequence 78 3e-11
2gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
4emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin 46 0.12
5gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 44 0.46
6gb|AC134382.13| Mus musculus strain C57BL/6J clone rp23-167l1, c... 44 0.46
7emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 44 0.46
8gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594... 44 0.46
9gb|AC005302.70| Mus musculus strain 129S6/SvEvTac chromosome 10 ... 44 0.46
10dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 44 0.46
11gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.8
12emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box prote... 42 1.8
13emb|AL138765.18| Human DNA sequence from clone RP11-34E5 on chro... 42 1.8
14gb|AC092718.3| Homo sapiens chromosome 16 clone RP11-303E16, com... 42 1.8
15gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340... 42 1.8
16dbj|AK107247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
17emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 42 1.8
18emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 42 1.8
19gb|AC160972.4| Mus musculus BAC clone RP24-571D21 from chromosom... 40 7.1
20gb|AC150492.2| Bos taurus BAC CH240-454H24 (Children's Hospital... 40 7.1
21gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 7.1
22emb|CR730928.2|CNS0GQXH Tetraodon nigroviridis full-length cDNA 40 7.1
23emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chro... 40 7.1
24ref|XM_795354.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 7.1
25gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 40 7.1
26gb|AC010760.8| Homo sapiens chromosome , clone RP11-2F9, complet... 40 7.1
27dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 7.1
28gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 40 7.1
29gb|AC105032.4| Homo sapiens chromosome 18, clone CTD-2272L2, com... 40 7.1
30gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 7.1
31gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 7.1
32gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 7.1
33gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 7.1
34dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
35gb|AF250200.1|AF250200 Human T-cell lymphotropic virus type 1 en... 40 7.1
36dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
37gb|AC135068.5| Homo sapiens chromosome 15, clone RP11-294C11, co... 40 7.1
38gb|AC134981.6| Homo sapiens chromosome 15, clone RP11-361C13, co... 40 7.1
39gb|AC134980.3| Homo sapiens chromosome 15, clone RP11-69H14, com... 40 7.1
40dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 7.1
41gb|AC171780.2| Homo sapiens chromosome 15, clone RP11-350K22, co... 40 7.1
42emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in ... 40 7.1
43emb|BX296533.9| Zebrafish DNA sequence from clone DKEY-54O1 in l... 40 7.1
44gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome ... 40 7.1
45gb|AC171558.2| Homo sapiens chromosome 15, clone RP11-983G14, co... 40 7.1
46gb|AY604930.1| Human T-lymphotropic virus 1 isolate 2917 from Ga... 40 7.1
47gb|AY604929.1| Human T-lymphotropic virus 1 isolate 2903 from Ga... 40 7.1
48gb|AY604928.1| Human T-lymphotropic virus 1 isolate 2902 from Ga... 40 7.1
49gb|AY604926.1| Human T-lymphotropic virus 1 isolate 2899 from Ga... 40 7.1
50gb|AY604918.1| Human T-lymphotropic virus 1 isolate 2808 from Ga... 40 7.1
51gb|AY604917.1| Human T-lymphotropic virus 1 isolate 2806 from Ga... 40 7.1
52gb|AY604908.1| Human T-lymphotropic virus 1 isolate 2551 from Ga... 40 7.1
53gb|AY604906.1| Human T-lymphotropic virus 1 isolate 2515 from Ga... 40 7.1
54gb|AY604903.1| Human T-lymphotropic virus 1 isolate 2504 from Ga... 40 7.1
55gb|AY604902.1| Human T-lymphotropic virus 1 isolate 2387 from Ga... 40 7.1
56gb|AY604900.1| Human T-lymphotropic virus 1 isolate 2371-2 from ... 40 7.1
57gb|AY604899.1| Human T-lymphotropic virus 1 isolate 2371-1 from ... 40 7.1
58gb|AY604897.1| Human T-lymphotropic virus 1 isolate 2307 from Ga... 40 7.1 
>gb|AY111604.1| Zea mays CL11280_1 mRNA sequence
          Length = 517

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 425 atcagtgcacggagtggcagcagatgaagggcatccacggctgcttc 471
           ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 277 atcagcgcacggagtggcagcagatgaacggcatccacggctgcttc 323
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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 428   agtgcacggagtggcagcagatgaagggcatccacggctgcttcctcactttgga 482
             ||||||| ||||| ||||| ||||| |||||||| |||||||||||  |||||||
Sbjct: 63938 agtgcaccgagtgacagcaaatgaacggcatccatggctgcttccttgctttgga 63992
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 428      agtgcacggagtggcagcagatgaagggcatccacggctgcttcctcactttgga 482
                ||||||| ||||| ||||| ||||| |||||||| |||||||||||  |||||||
Sbjct: 19132918 agtgcaccgagtgacagcaaatgaacggcatccatggctgcttccttgctttgga 19132972
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>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin
          Length = 1884

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 12  aactttgtattaactctagtata 34
           |||||||||||||||||||||||
Sbjct: 510 aactttgtattaactctagtata 488
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 487     ttgtcgacgttgttgctgtcgt 508
               ||||||||||||||||||||||
Sbjct: 2000655 ttgtcgacgttgttgctgtcgt 2000634
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>gb|AC134382.13| Mus musculus strain C57BL/6J clone rp23-167l1, complete sequence
          Length = 194086

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 454    ggcatccacggctgcttcctca 475
              ||||||||||||||||||||||
Sbjct: 165722 ggcatccacggctgcttcctca 165701



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    ggcatccacggctgcttcct 473
              ||||||||||||||||||||
Sbjct: 164942 ggcatccacggctgcttcct 164923
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 136     gcatgactaaagccacatccaa 157
               ||||||||||||||||||||||
Sbjct: 2537428 gcatgactaaagccacatccaa 2537449
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>gb|AC007961.32| Mus musculus strain 129S6/SvEvTac clone rp21-594l4 map 10, complete
             sequence
          Length = 180585

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 454   ggcatccacggctgcttcctca 475
             ||||||||||||||||||||||
Sbjct: 12653 ggcatccacggctgcttcctca 12632



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   ggcatccacggctgcttcct 473
             ||||||||||||||||||||
Sbjct: 11873 ggcatccacggctgcttcct 11854
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>gb|AC005302.70| Mus musculus strain 129S6/SvEvTac chromosome 10 clone rp21-481n4,
             complete sequence
          Length = 204653

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 454   ggcatccacggctgcttcctca 475
             ||||||||||||||||||||||
Sbjct: 32949 ggcatccacggctgcttcctca 32970



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   ggcatccacggctgcttcct 473
             ||||||||||||||||||||
Sbjct: 33729 ggcatccacggctgcttcct 33748
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 136     gcatgactaaagccacatccaa 157
               ||||||||||||||||||||||
Sbjct: 2558136 gcatgactaaagccacatccaa 2558157
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 134     gtgcatgactaaagccacatc 154
               |||||||||||||||||||||
Sbjct: 1318924 gtgcatgactaaagccacatc 1318944
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>emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box protein (m1 gene)
          Length = 1086

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 12  aactttgtattaactctagtataaagttg 40
           |||||||||||| |||||||| |||||||
Sbjct: 943 aactttgtattagctctagtacaaagttg 971
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>emb|AL138765.18| Human DNA sequence from clone RP11-34E5 on chromosome 10 Contains the
              SMBP gene for SM-11044 binding protein (SMBP)(EP70-P-iso),
              the TLL2 gene for  tolloid-like 2, a nucleophosmin
              (nucleolar phosphoprotein B23, numatrin) (NPM1)(B23, NPM,
              NUMATRIN) pseudogene, a ribosomal protein S2 (RPS2)(LLREP3)
              pseudogene, the 3' end of the gene for a novel protein
              (possible ortholog of mouse phosphoinositide-3-kinase
              adaptor protein 1 (Pik3ap1)) and two CpG islands, complete
              sequence
          Length = 162820

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 44     cagaggaagtatcaccatcct 64
              |||||||||||||||||||||
Sbjct: 127641 cagaggaagtatcaccatcct 127661
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>gb|AC092718.3| Homo sapiens chromosome 16 clone RP11-303E16, complete sequence
          Length = 203229

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     tgtattaactctagtataaag 37
              |||||||||||||||||||||
Sbjct: 177974 tgtattaactctagtataaag 177954
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>gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340B7, complete sequence
          Length = 199851

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     tgtattaactctagtataaag 37
              |||||||||||||||||||||
Sbjct: 130976 tgtattaactctagtataaag 130996
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>dbj|AK107247.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F11, full
            insert sequence
          Length = 1510

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 487  ttgtcgacgttgttgctgtcg 507
            |||||||||||||||||||||
Sbjct: 1098 ttgtcgacgttgttgctgtcg 1078
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 137     catgactaaagccacatccaa 157
               |||||||||||||||||||||
Sbjct: 2649707 catgactaaagccacatccaa 2649727
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 137     catgactaaagccacatccaa 157
               |||||||||||||||||||||
Sbjct: 2496903 catgactaaagccacatccaa 2496923
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>gb|AC160972.4| Mus musculus BAC clone RP24-571D21 from chromosome 12, complete sequence
          Length = 184921

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    tccacggctgcttcctcact 477
              ||||||||||||||||||||
Sbjct: 102388 tccacggctgcttcctcact 102369
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>gb|AC150492.2| Bos taurus  BAC CH240-454H24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 185197

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    accaaacaacatataggtac 188
              ||||||||||||||||||||
Sbjct: 185110 accaaacaacatataggtac 185129
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     aaacaacatataggtactac 191
               ||||||||||||||||||||
Sbjct: 1978828 aaacaacatataggtactac 1978809
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>emb|CR730928.2|CNS0GQXH Tetraodon nigroviridis full-length cDNA
          Length = 1472

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 gtgtgtgcatgactaaagcc 149
           ||||||||||||||||||||
Sbjct: 935 gtgtgtgcatgactaaagcc 916
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>emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chromosome 13q13.3-14.3
             Contains a guanine nucleotide binding protein (G protein),
             gamma 5 (GNG5) pseudogene, complete sequence
          Length = 70126

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   catatgtttgcaaggcataa 313
             ||||||||||||||||||||
Sbjct: 45720 catatgtttgcaaggcataa 45739
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>ref|XM_795354.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC587327 (LOC587327), mRNA
          Length = 3978

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  tgcaaacgagaccaaacaac 178
            ||||||||||||||||||||
Sbjct: 3663 tgcaaacgagaccaaacaac 3682
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 13   actttgtattaactctagtataaagttg 40
            ||||| || |||||||||||||||||||
Sbjct: 8294 actttatactaactctagtataaagttg 8321
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>gb|AC010760.8| Homo sapiens chromosome , clone RP11-2F9, complete sequence
          Length = 179139

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     tcctcaaacatgtttgagac 80
              ||||||||||||||||||||
Sbjct: 134882 tcctcaaacatgtttgagac 134901
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     atgactaaagccacatccaa 157
               ||||||||||||||||||||
Sbjct: 2615612 atgactaaagccacatccaa 2615631
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>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
            sequence
          Length = 91863

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 263  atctacacgaacacgacagtagtt 286
            |||||||||||||||||| |||||
Sbjct: 6023 atctacacgaacacgacaatagtt 6000
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>gb|AC105032.4| Homo sapiens chromosome 18, clone CTD-2272L2, complete sequence
          Length = 95865

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   ctcactttggacctcttgtc 491
             ||||||||||||||||||||
Sbjct: 35148 ctcactttggacctcttgtc 35129
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     atgactaaagccacatccaa 157
               ||||||||||||||||||||
Sbjct: 2544967 atgactaaagccacatccaa 2544986
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     atgactaaagccacatccaa 157
               ||||||||||||||||||||
Sbjct: 2555756 atgactaaagccacatccaa 2555775
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     atgactaaagccacatccaa 157
               ||||||||||||||||||||
Sbjct: 2608652 atgactaaagccacatccaa 2608671
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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 406   acggagaatgaatggcggcatcag 429
             ||||| ||||||||||||||||||
Sbjct: 45530 acggataatgaatggcggcatcag 45553
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       ttgggacagaggaagtatca 57
                ||||||||||||||||||||
Sbjct: 43111500 ttgggacagaggaagtatca 43111519
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>gb|AF250200.1|AF250200 Human T-cell lymphotropic virus type 1 envelope glycoprotein (env)
            gene, partial cds
          Length = 1466

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0459B04
          Length = 142475

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ttgggacagaggaagtatca 57
              ||||||||||||||||||||
Sbjct: 108529 ttgggacagaggaagtatca 108548
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>gb|AC135068.5| Homo sapiens chromosome 15, clone RP11-294C11, complete sequence
          Length = 178845

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    tcctcaaacatgtttgagac 80
             ||||||||||||||||||||
Sbjct: 46188 tcctcaaacatgtttgagac 46169
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>gb|AC134981.6| Homo sapiens chromosome 15, clone RP11-361C13, complete sequence
          Length = 194789

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    tcctcaaacatgtttgagac 80
             ||||||||||||||||||||
Sbjct: 27189 tcctcaaacatgtttgagac 27170
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>gb|AC134980.3| Homo sapiens chromosome 15, clone RP11-69H14, complete sequence
          Length = 151383

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tcctcaaacatgtttgagac 80
             ||||||||||||||||||||
Sbjct: 79279 tcctcaaacatgtttgagac 79298
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     atgactaaagccacatccaa 157
               ||||||||||||||||||||
Sbjct: 2544418 atgactaaagccacatccaa 2544437
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>gb|AC171780.2| Homo sapiens chromosome 15, clone RP11-350K22, complete sequence
          Length = 192478

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tcctcaaacatgtttgagac 80
             ||||||||||||||||||||
Sbjct: 81745 tcctcaaacatgtttgagac 81764
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>emb|BX005049.6| Zebrafish DNA sequence from clone DKEY-89O18 in linkage group 24,
              complete sequence
          Length = 251421

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 458    tccacggctgcttcctcactttgg 481
              ||||| ||||||||||||||||||
Sbjct: 132571 tccactgctgcttcctcactttgg 132594
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>emb|BX296533.9| Zebrafish DNA sequence from clone DKEY-54O1 in linkage group 5,
             complete sequence
          Length = 200047

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 458   tccacggctgcttcctcactttgg 481
             ||||| ||||||||||||||||||
Sbjct: 67427 tccactgctgcttcctcactttgg 67450
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>gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome 12, complete sequence
          Length = 236266

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    tccacggctgcttcctcact 477
              ||||||||||||||||||||
Sbjct: 234926 tccacggctgcttcctcact 234907
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>gb|AC171558.2| Homo sapiens chromosome 15, clone RP11-983G14, complete sequence
          Length = 201265

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     tcctcaaacatgtttgagac 80
              ||||||||||||||||||||
Sbjct: 110214 tcctcaaacatgtttgagac 110233
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>gb|AY604930.1| Human T-lymphotropic virus 1 isolate 2917 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604929.1| Human T-lymphotropic virus 1 isolate 2903 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604928.1| Human T-lymphotropic virus 1 isolate 2902 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604926.1| Human T-lymphotropic virus 1 isolate 2899 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604918.1| Human T-lymphotropic virus 1 isolate 2808 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604917.1| Human T-lymphotropic virus 1 isolate 2806 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604908.1| Human T-lymphotropic virus 1 isolate 2551 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604906.1| Human T-lymphotropic virus 1 isolate 2515 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604903.1| Human T-lymphotropic virus 1 isolate 2504 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604902.1| Human T-lymphotropic virus 1 isolate 2387 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604900.1| Human T-lymphotropic virus 1 isolate 2371-2 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604899.1| Human T-lymphotropic virus 1 isolate 2371-1 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381
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>gb|AY604897.1| Human T-lymphotropic virus 1 isolate 2307 from Gabon envelope
            glycoprotein (env) gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 397  tcgtagctgacggagaatgaatgg 420
            ||||||||||||||||||| ||||
Sbjct: 1404 tcgtagctgacggagaatgcatgg 1381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,107,280
Number of Sequences: 3902068
Number of extensions: 4107280
Number of successful extensions: 67774
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67555
Number of HSP's gapped (non-prelim): 219
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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